<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Limulus polyphemus Joint Assembly and Mapping Lp-26 (offspring)" accession="SRX262164" center_name="Rice University">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX262164</PRIMARY_ID>
      <SUBMITTER_ID namespace="Rice University">Limulus polyphemus Joint Assembly and Mapping Lp-26 (offspring)</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Limulus polyphemus Lp-26 (offspring)</TITLE>
    <STUDY_REF accession="SRP019763">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP019763</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA187356</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>libraries were constructed using genomic DNA extracted from whole limulus offspring. briefly, larvae were lysed and DNA extracted using disposable plastic pestles and eppendorf tubes followed by proteinase K lysis and DNA extraction as per Qiagen DNAeasy kit protocols. Genomic DNA was further cleaned using Zymo DNA clean columns.  Illumina libraries were created using Nextera library prep kit as per kit protocols.  Illumina libraries from offspring LP-11 through Lp-34 (all created using Nextera kit) were pooled in equimolar amounts (Lp-11-Lp-22, and Lp23-Lp-34 in two separate pools) for sequencing. Each pool in a separate flowcell lane.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS409105">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS409105</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN01901875</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Lp-26 (offspring)</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
