SRX265593 GSM1123629_1 GSM1123629: OSS replicate 1; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413279 GSM1123629 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123629 gds 301123629 GEO Accession GSM1123629 SRX265594 GSM1123630_1 GSM1123630: OSS replicate 2; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413280 GSM1123630 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123630 gds 301123630 GEO Accession GSM1123630 SRX265595 GSM1123631_1 GSM1123631: ovary replicate 1; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413281 GSM1123631 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123631 gds 301123631 GEO Accession GSM1123631 SRX265596 GSM1123632_1 GSM1123632: ovary replicate 2; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413282 GSM1123632 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123632 gds 301123632 GEO Accession GSM1123632 SRX265597 GSM1123633_1 GSM1123633: carcass replicate 1; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413284 GSM1123633 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123633 gds 301123633 GEO Accession GSM1123633 SRX265598 GSM1123634_1 GSM1123634: carcass replicate 2; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413283 GSM1123634 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123634 gds 301123634 GEO Accession GSM1123634 SRX265599 GSM1123635_1 GSM1123635: embryo replicate 1; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413285 GSM1123635 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123635 gds 301123635 GEO Accession GSM1123635 SRX265600 GSM1123636_1 GSM1123636: embryo replciate 2; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413286 GSM1123636 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123636 gds 301123636 GEO Accession GSM1123636 SRX265601 GSM1123637_1 GSM1123637: RNAseq nos::KD-armi; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413287 GSM1123637 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123637 gds 301123637 GEO Accession GSM1123637 SRX265602 GSM1123638_1 GSM1123638: RNAseq nos::KD-ars2; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413288 GSM1123638 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123638 gds 301123638 GEO Accession GSM1123638 SRX265603 GSM1123639_1 GSM1123639: RNAseq nos::KD-aub; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413289 GSM1123639 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123639 gds 301123639 GEO Accession GSM1123639 SRX265604 GSM1123640_1 GSM1123640: RNAseq nos::KD-CG3893; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413290 GSM1123640 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123640 gds 301123640 GEO Accession GSM1123640 SRX265605 GSM1123641_1 GSM1123641: RNAseq nos::KD-cuff; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413291 GSM1123641 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123641 gds 301123641 GEO Accession GSM1123641 SRX265606 GSM1123642_1 GSM1123642: RNAseq nos::KD-del; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413292 GSM1123642 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123642 gds 301123642 GEO Accession GSM1123642 SRX265607 GSM1123643_1 GSM1123643: RNAseq nos::KD-gasz; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413293 GSM1123643 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123643 gds 301123643 GEO Accession GSM1123643 SRX265608 GSM1123644_1 GSM1123644: RNAseq nos::KD-mael; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413294 GSM1123644 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123644 gds 301123644 GEO Accession GSM1123644 SRX265609 GSM1123645_1 GSM1123645: RNAseq nos::KD-piwi; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413295 GSM1123645 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123645 gds 301123645 GEO Accession GSM1123645 SRX265610 GSM1123646_1 GSM1123646: RNAseq nos::KD-rhi; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413296 GSM1123646 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123646 gds 301123646 GEO Accession GSM1123646 SRX265611 GSM1123647_1 GSM1123647: RNAseq nos::KD-shu; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413298 GSM1123647 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123647 gds 301123647 GEO Accession GSM1123647 SRX265612 GSM1123648_1 GSM1123648: RNAseq nos::KD-spn-E; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413297 GSM1123648 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123648 gds 301123648 GEO Accession GSM1123648 SRX265613 GSM1123649_1 GSM1123649: RNAseq nos::KD-squ; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413299 GSM1123649 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123649 gds 301123649 GEO Accession GSM1123649 SRX265614 GSM1123650_1 GSM1123650: RNAseq nos::KD-tej; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413300 GSM1123650 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123650 gds 301123650 GEO Accession GSM1123650 SRX265615 GSM1123651_1 GSM1123651: RNAseq nos::KD-U2A; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413301 GSM1123651 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123651 gds 301123651 GEO Accession GSM1123651 SRX265616 GSM1123652_1 GSM1123652: RNAseq nos::KD-vasa; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413302 GSM1123652 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123652 gds 301123652 GEO Accession GSM1123652 SRX265617 GSM1123653_1 GSM1123653: RNAseq nos::KD-w_rep1; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413303 GSM1123653 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123653 gds 301123653 GEO Accession GSM1123653 SRX265618 GSM1123654_1 GSM1123654: RNAseq nos::KD-w_rep2; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413304 GSM1123654 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123654 gds 301123654 GEO Accession GSM1123654 SRX265619 GSM1123655_1 GSM1123655: RNAseq nos::KD-Yb; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413305 GSM1123655 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123655 gds 301123655 GEO Accession GSM1123655 SRX265620 GSM1123656_1 GSM1123656: RNAseq nos::KD-zuc; Drosophila melanogaster; RNA-Seq SRP021103 GSE46100 SRS413306 GSM1123656 RNA-Seq TRANSCRIPTOMIC cDNA RNA was extracted from cells or tissues using TRIzol reagent (Invitrogen). RNA-seq libraries were prepared using the ScriptSeq V2 kit from Epicentre. 5ug total RNA was depleted of ribosomal RNA using the RiboZero Gold (Human/Mouse/Rat) kit from Epicentre and used as input for the ScriptSeq protocol, as per the manufacturer's instructions. Illumina HiSeq 2000 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1123656 gds 301123656 GEO Accession GSM1123656