<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="HMWDOM microcosm cDNA 27h" accession="SRX266499" center_name="Massachusetts Institute of Technology">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX266499</PRIMARY_ID>
      <SUBMITTER_ID namespace="Massachusetts Institute of Technology">HMWDOM microcosm cDNA 27h</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>HIDOM HMWDOM microcosm community cDNA (27h) 0.2-1.6 um 10/05/28</TITLE>
    <STUDY_REF accession="SRP021115">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP021115</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA196863</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Library preparation followed the Titanium Rapid Library Preparation protocol. In order to improve the retention of smaller cDNA molecules, adaptor-ligated libraries were not diluted prior to size selection with AMPure XP beads. Libraries were quantified using the Titanium Slingshot kit (Fluidigm) and added to emulsion PCR reactions at 0.1 molecules per bead. Sequencing and quality control were followed manufacturer recommendations.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS413509">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS413509</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN02045406</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METATRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
