<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="LINE" accession="SRX286366" center_name="Indiana University">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX286366</PRIMARY_ID>
      <SUBMITTER_ID namespace="Indiana University">LINE</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Theobroma cacao Matina 1-6 linear fragment sequencing reads, 454 GS FLX Titanium</TITLE>
    <STUDY_REF accession="SRP004925">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP004925</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA51633</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>DNA was prepared from isolated nuclei of Theobroma cacao Matina1-6 leaves (USDA-ARS SHRS).  A 454 GS FLX Titanium linear fragment (shotgun) library was prepared and sequenced according to the manufacturer (Roche/454 Sequencing).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS428720">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS428720</PRIMARY_ID>
          <SUBMITTER_ID namespace="Indiana University">Theobroma cacao Matina1-6 nuclear DNA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LINE</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
