<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="E. faecium LCT-EF90 transcriptome resequencing project" accession="SRX316177" center_name="BGI">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX316177</PRIMARY_ID>
      <SUBMITTER_ID namespace="BGI">E. faecium LCT-EF90 transcriptome resequencing project</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>E. faecium LCT-EF90 transcriptome project for researching species mutations in space environment</TITLE>
    <STUDY_REF accession="SRP026357">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026357</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>E. faecium is used as probiotics to improve the microbial balance of the intestine and to treat gastroenteritis in humans and animals. Strain LCT-EF128 was isolated from a clinical specimen in 2011.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS453632">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS453632</PRIMARY_ID>
          <SUBMITTER_ID namespace="BGI">LCT-EF90</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>91</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="E. faecium LCT-EF258 transcriptome resequencing project" accession="SRX316178" center_name="BGI">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX316178</PRIMARY_ID>
      <SUBMITTER_ID namespace="BGI">E. faecium LCT-EF258 transcriptome resequencing project</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>E. faecium LCT-EF258 transcriptome project for researching species mutations in space environment</TITLE>
    <STUDY_REF accession="SRP026358">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026358</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The space environment has been shown to affect microbes by altering various features, including morphology, growth rate, metabolism, virulence, drug resistance, and gene expression and mutation. Here we present the draft genome sequence of the Enterococcus faecium strain LCT-EF258, which was exposed to 17-day space flight.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS453633">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS453633</PRIMARY_ID>
          <SUBMITTER_ID namespace="BGI">LCT-EF258</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>180</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>91</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
