<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Bac_Arch_16S" accession="SRX326595" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX326595</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Bac_Arch_16S</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Archaeal 16S rRNA gene (V1-V2) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463831">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463831</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Cellulose_archaea</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Bac_16S_Cellulose" accession="SRX327451" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327451</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Bac_16S_Cellulose</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Bacterial 16S rRNA gene (V1-V3) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463832">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463832</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Cellulose_bacteria</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Arch_16S_Xylan" accession="SRX327452" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327452</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Arch_16S_Xylan</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Archaeal 16S rRNA gene (V1-V2) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463833">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463833</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Xylan_archaea</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Arch_16S_Foodwaste" accession="SRX327456" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327456</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Arch_16S_Foodwaste</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Archaeal 16S rRNA gene (V1-V2) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463837">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463837</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Foodwaste_archaea</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Arch_16S_Sludge" accession="SRX327459" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327459</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Arch_16S_Sludge</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Archaeal 16S rRNA gene (V1-V2) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463840">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463840</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Sludge_archaea</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Bac_16S_Foodwaste" accession="SRX327460" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327460</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Bac_16S_Foodwaste</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Bacterial 16S rRNA gene (V1-V3) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463841">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463841</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Foodwaste_bacteria</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Bac_16S_Xylan" accession="SRX327461" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327461</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Bac_16S_Xylan</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Bacterial 16S rRNA gene (V1-V3) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463842">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463842</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Xylan_bacteria</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Bac_16S_Sludge" accession="SRX327462" center_name="city university of hongkong">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX327462</PRIMARY_ID>
      <SUBMITTER_ID namespace="city university of hongkong">Bac_16S_Sludge</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Bacterial 16S rRNA gene (V1-V3) 454 pyrosequencing of methane-generating microbial communities</TITLE>
    <STUDY_REF accession="SRP027584">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP027584</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Triplicate PCR was prepared for each sample and the amplicons were pooled and purified using the Agencourt AMPure XP - PCR Purification Kit. After purification, the pooled amplicons were quantified using the Quant-iT Broad-Range DNA Assay Kit and equimolar concentrations of amplicons from each sample were mixed and sequenced on a Roche 454 GS FLX Titanium platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463843">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463843</PRIMARY_ID>
          <SUBMITTER_ID namespace="city university of hongkong">Sludge_bacteria</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
