<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Eunicea" accession="SRX326897" center_name="PennState">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX326897</PRIMARY_ID>
      <SUBMITTER_ID namespace="PennState">Eunicea</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Sequences for Eunicea flexuosa</TITLE>
    <STUDY_REF accession="SRP028127">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP028127</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>DNA was extracted from Symbiodinium-free larvae using QIAGEN DNeasy kits with 2 elution steps of 5 min of elution time. High-quality DNA (~3mg) was extracted.Genomic libraries were prepared from the double-stranded DNA using Nextera DNA Sample Prep Kit (Epicentre Biotechnologies, Madison WI) and shotgun sequenced on a 454 GS-FLX sequencer using the Titanium Sequencing Kit (Roche Diagnostics Corporation, Indianapolis, IN).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS463314">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS463314</PRIMARY_ID>
          <SUBMITTER_ID namespace="PennState">Ef1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>GS de Novo Assembler</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
