<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="CCQM-NMIA-454-Ecoli" accession="SRX370991" center_name="National Institute of Standards and Technology">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX370991</PRIMARY_ID>
      <SUBMITTER_ID namespace="National Institute of Standards and Technology">CCQM-NMIA-454-Ecoli</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>CCQM MBWG 2013 Study NMIA 454 Escherichia coli O157:H7 EDL933 454 sequencing data</TITLE>
    <STUDY_REF accession="SRP032371">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP032371</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Three subregions of the 16S rRNA gene were PCR amplified from IRMM-449 Escherichia coli O157:H7 EDL933 and IRMM-447 Listeria monocytogenes str 4b NCTC 11994 reference materialreference material and sequenced using the following primer pairs 27F:534R, 357F:926R, and 986F:1492R.  Each amplicon was sequenced in both directions.    Target  Primer name  Combined sequence primer= Primer A or B, Key, MID, template specific 5' to 3'    E. coli  UHTS1  E-27F-fusion  cgtatcgcctccctcgcgccatcagacgagtgcgtagagtttgatcAtggctcag  UHTS1  E-534R-fusion  ctatgcgccttgccagcccgctcagacgctcgacaattaccgcggctgctgg  UHTS2  E-357F-fusion  cgtatcgcctccctcgcgccatcagagacgcactccctacgggaggcagcag  UHTS2  E-926R-fusion  ctatgcgccttgccagcccgctcagagcactgtagccgtcaattcAtttGagt  UHTS3  E-U968F-fusion  cgtatcgcctccctcgcgccatcagatcagacacgaacgcgaagaaccttac  UHTS3  E-1492R-fusion  ctatgcgccttgccagcccgctcagatatcgcgagtacggTtaccttgttaCgactt    L. monocytogenes  UHTS1  L-27F-fusion  cgtatcgcctccctcgcgccatcagcgtgtctctaagagtttgatcctggctcag  UHTS1  L-534R-fusion  ctatgcgccttgccagcccgctcagctcgcgtgtcattaccgcggctgctgg  UHTS2  L-357F-fusion  cgtatcgcctccctcgcgccatcagtagtatcagccctacgggaggcagcag  UHTS2  L-926R-fusion  ctatgcgccttgccagcccgctcagtctctatgcgccgtcaattcCtttGagt  UHTS3  L-U968F-fusion  cgtatcgcctccctcgcgccatcagtgatacgtctaacgcgaagaaccttac  UHTS3  L-1492R-fusion  ctatgcgccttgccagcccgctcagtactgagctatacggCtaccttgttaCgactt</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS497312">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS497312</PRIMARY_ID>
          <SUBMITTER_ID namespace="National Institute for  Standards and Technology">ecoli_nmia_454</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS Junior</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
