<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE155413" accession="SRP274283">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP274283</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA649691</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE155413</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>MeRIP-seq mapping of m6A in the IFN-ß induced transcriptome in Huh7 cells</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>The RNA modification N6-methyladenosine (m6A) regulates gene expression through various transcript-specific effects. The goal of this experiment was to identify m6A-modified transcripts during the type I interferon response, with interest in determining which interferon-stimulated genes are modified by m6A. We found that a high percentage of ISGs are m6A-modified, and in follow-up experiments we determined the effects of m6A on the expression of interferon-stimulated genes. We found that m6A regulates the translation of a subset of ISGs, which in turn augments the antiviral effects of the type I interferon respnose. Overall design: Huh7 cells were seeded in 15-cm plates and treated with IFN-ß at 50 units/mL or mock treated for 8 hours prior to harvest and MeRIP-seq was performed. 3 biological replicates were performed for each condition.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE155413</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>33657363</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
    <STUDY_ATTRIBUTES>
      <STUDY_ATTRIBUTE>
        <TAG>parent_bioproject</TAG>
        <VALUE>PRJNA649769</VALUE>
      </STUDY_ATTRIBUTE>
    </STUDY_ATTRIBUTES>
  </STUDY>
</STUDY_SET>
