<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX8859884" alias="S-linearis-S6">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX8859884</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB7790883">S-linearis-S6</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Low coverage genome sequencing of the tamarind weevil Sitophilus linearis</TITLE>
    <STUDY_REF accession="SRP274596">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP274596</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB7790883">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Twenty pairs of ovaries were dissected from females S. oryzae, S. zeamais, S. granarius and S. linearis. Ovaries were homogenized in 100 mM NaCl, 1 mM EDTA pH 8, 10 mM Tris-HCl pH 8 using a small piston. Proteinase K digestion followed in the presence of SDS for 2h at 55C with shaking and for 1h at 37C with RNAse A. A typical phenol chloroform extraction was then performed and genomic DNA was isopropanol precipitated. Eight whole genome sequencing libraries with a median insert size of 550 bp were constructed using the Illumina TruSeq DNA PCR-free sample preparation kit, according to manufacturer's protocols. Briefly, 2 ug of each gDNA were sheared using a Covaris M220 Focused-ultrasonicator, end-repaired, A-tailed, and adapter ligated. Library quality control was performed using the 2100 Bioanalyzer System with the Agilent High Sensitivity DNA Kit. The libraries were individually quantified via qPCR using a KAPA Library Quantification Kits for Illumina platforms, then they were pooled together in equimolar quantities and sequenced in a MiSeq sequencing system (Illumina). 2x300 paired-end reads were obtained using a MiSeq Reagent Kits (600-cycles).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS7121881">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS7121881</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|nico.parisot@gmail.com">S-linearis-S6</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>S-linearis-S6</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
