<?xml version="1.0" encoding="UTF-8"?>
<ANALYSIS_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <ANALYSIS alias="PKU carrier VCF" center_name="University of Pittsburgh / UPMC Children's Hospital" accession="SRZ190732">
    <IDENTIFIERS>
      <PRIMARY_ID>SRZ190732</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Pittsburgh / UPMC Children's Hospital">PKU carrier VCF</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>PKU carrier VCF</TITLE>
    <STUDY_REF accession="SRP276170">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP276170</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESCRIPTION>GATK and Manta vcf files</DESCRIPTION>
    <ANALYSIS_TYPE>
      <SEQUENCE_ANNOTATION>
        <PROCESSING>
          <PIPELINE>
            <PIPE_SECTION>
              <STEP_INDEX>1</STEP_INDEX>
              <PREV_STEP_INDEX>NULL</PREV_STEP_INDEX>
              <PROGRAM>GATK/Manta</PROGRAM>
              <VERSION>0.0.0</VERSION>
            </PIPE_SECTION>
          </PIPELINE>
        </PROCESSING>
      </SEQUENCE_ANNOTATION>
    </ANALYSIS_TYPE>
    <TARGETS>
      <TARGET sra_object_type="SAMPLE" accession="SRS7153854"/>
      <TARGET sra_object_type="EXPERIMENT" accession="SRX8894850"/>
    </TARGETS>
    <DATA_BLOCK>
      <FILES>
        <FILE filename="MJ02-116-2_SV.vcf.gz" filetype="tsv" checksum_method="MD5" checksum="76ea234e41f7a57de3bad84c969aebc2"/>
        <FILE filename="MJ02-116-2.hard-filtered.vcf.gz" filetype="tsv" checksum_method="MD5" checksum="df79b7a2cabdc6d33cd3afbbd726367a"/>
      </FILES>
    </DATA_BLOCK>
  </ANALYSIS>
  <ANALYSIS alias="PKU affected VCF" center_name="University of Pittsburgh / UPMC Children's Hospital" accession="SRZ190733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRZ190733</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Pittsburgh / UPMC Children's Hospital">PKU affected VCF</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>PKU affected VCF</TITLE>
    <STUDY_REF accession="SRP276170">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP276170</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESCRIPTION>GATK and Manta vcf files</DESCRIPTION>
    <ANALYSIS_TYPE>
      <SEQUENCE_ANNOTATION>
        <PROCESSING>
          <PIPELINE>
            <PIPE_SECTION>
              <STEP_INDEX>1</STEP_INDEX>
              <PREV_STEP_INDEX>NULL</PREV_STEP_INDEX>
              <PROGRAM>GATK/Manta</PROGRAM>
              <VERSION>0.0.0</VERSION>
            </PIPE_SECTION>
          </PIPELINE>
        </PROCESSING>
      </SEQUENCE_ANNOTATION>
    </ANALYSIS_TYPE>
    <TARGETS>
      <TARGET sra_object_type="SAMPLE" accession="SRS7153853"/>
      <TARGET sra_object_type="EXPERIMENT" accession="SRX8894849"/>
    </TARGETS>
    <DATA_BLOCK>
      <FILES>
        <FILE filename="MJ01-116-1_SV.vcf.gz" filetype="tsv" checksum_method="MD5" checksum="f652faaa0fec71e1220c70d4a09ed9b5"/>
        <FILE filename="MJ01-116-1.hard-filtered.vcf.gz" filetype="tsv" checksum_method="MD5" checksum="814e21513d1e8699f317ade427652587"/>
      </FILES>
    </DATA_BLOCK>
  </ANALYSIS>
  <ANALYSIS alias="normal VCF" center_name="University of Pittsburgh / UPMC Children's Hospital" accession="SRZ190734">
    <IDENTIFIERS>
      <PRIMARY_ID>SRZ190734</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Pittsburgh / UPMC Children's Hospital">normal VCF</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>normal VCF</TITLE>
    <STUDY_REF accession="SRP276170">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP276170</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESCRIPTION>GATK and Manta vcf files</DESCRIPTION>
    <ANALYSIS_TYPE>
      <SEQUENCE_ANNOTATION>
        <PROCESSING>
          <PIPELINE>
            <PIPE_SECTION>
              <STEP_INDEX>1</STEP_INDEX>
              <PREV_STEP_INDEX>NULL</PREV_STEP_INDEX>
              <PROGRAM>GATK/Manta</PROGRAM>
              <VERSION>0.0.0</VERSION>
            </PIPE_SECTION>
          </PIPELINE>
        </PROCESSING>
      </SEQUENCE_ANNOTATION>
    </ANALYSIS_TYPE>
    <TARGETS>
      <TARGET sra_object_type="SAMPLE" accession="SRS7153855"/>
      <TARGET sra_object_type="EXPERIMENT" accession="SRX8894851"/>
    </TARGETS>
    <DATA_BLOCK>
      <FILES>
        <FILE filename="MJ03-YucGFP.hard-filtered.vcf.gz" filetype="tsv" checksum_method="MD5" checksum="ddc06d108d91f9287b63127efcae2a53"/>
        <FILE filename="MJ03-YucGFP_SV.vcf.gz" filetype="tsv" checksum_method="MD5" checksum="ffb902d39431ab4ab1ec4bd07fbe80d8"/>
      </FILES>
    </DATA_BLOCK>
  </ANALYSIS>
</ANALYSIS_SET>
