SRX376583 GSM1262345 SRP032934 GSE52277 SRS501209 GSM1262345 ChIP-Seq GENOMIC ChIP Whole cell extracts were sonicated to solubilize the chromatin. 1x10^8 cells were sonicated at 21 watts in 20 second pulses for 3 min of sonication time. The chromatin extracts containing DNA fragments with an average size of 500 bp were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. All protocols for Illumina/Solexa sequence preparation, sequencing and quality control are provided by Illumina (http://www.illumina.com/pages.ilmn?ID=203). Illumina HiSeq 2000 GEO Sample GSM1262345 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1262345 gds 301262345 GEO Accession GSM1262345 SRX376584 GSM1262346 SRP032934 GSE52277 SRS501210 GSM1262346 ChIP-Seq GENOMIC ChIP Whole cell extracts were sonicated to solubilize the chromatin. 1x10^8 cells were sonicated at 21 watts in 20 second pulses for 3 min of sonication time. The chromatin extracts containing DNA fragments with an average size of 500 bp were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. All protocols for Illumina/Solexa sequence preparation, sequencing and quality control are provided by Illumina (http://www.illumina.com/pages.ilmn?ID=203). Illumina HiSeq 2000 GEO Sample GSM1262346 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1262346 gds 301262346 GEO Accession GSM1262346 SRX376585 GSM1262347 SRP032934 GSE52277 SRS501211 GSM1262347 ChIP-Seq GENOMIC ChIP Whole cell extracts were sonicated to solubilize the chromatin. 1x10^8 cells were sonicated at 21 watts in 20 second pulses for 3 min of sonication time. The chromatin extracts containing DNA fragments with an average size of 500 bp were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. All protocols for Illumina/Solexa sequence preparation, sequencing and quality control are provided by Illumina (http://www.illumina.com/pages.ilmn?ID=203). Illumina HiSeq 2000 GEO Sample GSM1262347 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1262347 gds 301262347 GEO Accession GSM1262347 SRX376586 GSM1262348 SRP032934 GSE52277 SRS501212 GSM1262348 ChIP-Seq GENOMIC ChIP Whole cell extracts were sonicated to solubilize the chromatin. 1x10^8 cells were sonicated at 21 watts in 20 second pulses for 3 min of sonication time. The chromatin extracts containing DNA fragments with an average size of 500 bp were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. All protocols for Illumina/Solexa sequence preparation, sequencing and quality control are provided by Illumina (http://www.illumina.com/pages.ilmn?ID=203). Illumina HiSeq 2000 GEO Sample GSM1262348 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1262348 gds 301262348 GEO Accession GSM1262348 SRX376587 GSM1262349 SRP032934 GSE52277 SRS501213 GSM1262349 ChIP-Seq GENOMIC ChIP Whole cell extracts were sonicated to solubilize the chromatin. 1x10^8 cells were sonicated at 21 watts in 20 second pulses for 3 min of sonication time. The chromatin extracts containing DNA fragments with an average size of 500 bp were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. All protocols for Illumina/Solexa sequence preparation, sequencing and quality control are provided by Illumina (http://www.illumina.com/pages.ilmn?ID=203). Illumina HiSeq 2000 GEO Sample GSM1262349 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1262349 gds 301262349 GEO Accession GSM1262349 SRX376588 GSM1262350 SRP032934 GSE52277 SRS501215 GSM1262350 ChIP-Seq GENOMIC ChIP Whole cell extracts were sonicated to solubilize the chromatin. 1x10^8 cells were sonicated at 21 watts in 20 second pulses for 3 min of sonication time. The chromatin extracts containing DNA fragments with an average size of 500 bp were prepared for sequencing according to a modified version of the Solexa Genomic DNA protocol. Fragmented DNA was end repaired and subjected to 18 cycles of LM-PCR using oligos provided by Illumina. Amplified fragments between 150 and 300bp (representing shear fragments between 50 and 200nt in length and ~100bp of primer sequence) were isolated by agarose gel electrophoresis and purified. All protocols for Illumina/Solexa sequence preparation, sequencing and quality control are provided by Illumina (http://www.illumina.com/pages.ilmn?ID=203). Illumina HiSeq 2000 GEO Sample GSM1262350 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1262350 gds 301262350 GEO Accession GSM1262350