SRX377902 Escherichia coli adaptation to the mouse gut SRP033025 The library construction and sequencing were performed at the genomics facility at Instituto Gulbenkian de Ciencia (Portugal). Nextera XT kit from Illumina was used for library construction. Briefly, a sample of mice feces was plated on LB agar and allowed to grow till ~1000 isolated colonies were visible. These colonies were then pooled and DNA was extracted for whole genome sequencing in a MiSeq Benchtop Sequencer. SRS502710 1.12pop WGS GENOMIC unspecified 500 0 Application Read Forward 1 1 Application Read Reverse 251 Illumina MiSeq SRX378023 Escherichia coli adaptation to the mouse gut - pop1.10 SRP033025 The library construction and sequencing were performed at the genomics facility at Instituto Gulbenkian de Ciencia (Portugal). Nextera XT kit from Illumina was used for library construction. Briefly, a sample of mice feces was plated on LB agar and allowed to grow till ~1000 isolated colonies were visible. These colonies were then pooled and DNA was extracted for whole genome sequencing in a MiSeq Benchtop Sequencer. SRS502706 1.10pop WGS GENOMIC unspecified 500 0 Application Read Forward 1 1 Application Read Reverse 251 Illumina MiSeq SRX378024 Escherichia coli adaptation to the mouse gut-1.11pop SRP033025 The library construction and sequencing were performed at the genomics facility at Instituto Gulbenkian de Ciencia (Portugal). Nextera XT kit from Illumina was used for library construction. Briefly, a sample of mice feces was plated on LB agar and allowed to grow till ~1000 isolated colonies were visible. These colonies were then pooled and DNA was extracted for whole genome sequencing in a MiSeq Benchtop Sequencer. SRS502829 1.11pop WGS GENOMIC unspecified 500 0 Application Read Forward 1 1 Application Read Reverse 251 Illumina MiSeq