<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="GSM1274424" accession="SRX383019" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383019</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274424</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274424: HSC_R1; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507125">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507125</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274424</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274424</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274424</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274424</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274425" accession="SRX383020" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383020</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274425</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274425: HSC_R2; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507126">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507126</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274425</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274425</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274425</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274425</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274426" accession="SRX383021" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383021</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274426</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274426: HSC_R3; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507127">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507127</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274426</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274426</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274426</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274426</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274426</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274427" accession="SRX383022" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383022</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274427</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274427: MPP1_R1; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507128">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507128</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274427</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274427</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274427</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274427</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274428" accession="SRX383023" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383023</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274428</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274428: MPP1_R2; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507129">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507129</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274428</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274428</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274428</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274428</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274428</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274429" accession="SRX383024" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383024</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274429</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274429: MPP1_R3; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507130">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507130</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274429</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274429</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274429</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274429</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274429</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274430" accession="SRX383025" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383025</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274430</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274430: MPP2_R1; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507131">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507131</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274430</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274430</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274430</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274430</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274431" accession="SRX383026" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383026</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274431</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274431: MPP2_R2; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507132">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507132</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274431</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274431</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274431</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274431</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274431</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274432" accession="SRX383027" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383027</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274432</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274432: MPP2_R3; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507133">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507133</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274432</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274432</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274432</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274432</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274432</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274433" accession="SRX383028" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383028</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274433</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274433: MPP_R1; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507134">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507134</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274433</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274433</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274433</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274433</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274433</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274434" accession="SRX383029" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383029</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274434</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274434: MPP_R2; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507135">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507135</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274434</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274434</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274434</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274434</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="GSM1274435" accession="SRX383030" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX383030</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1274435</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1274435: MPP_R3; Mus musculus; Bisulfite-Seq</TITLE>
    <STUDY_REF accession="SRP033304" refname="GSE52709">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP033304</PRIMARY_ID>
        <SUBMITTER_ID namespace="GEO">GSE52709</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS507136">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS507136</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM1274435</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>Bisulfite-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Genomic DNA was isolated using the QIAamp DNA Micro Kit (Qiagen, Germany) and polyacryl precipitation carrier (Molecular Research Center Inc., Cincinnati, OH, USA). Tagmentation-based whole-genome bisulfite sequencing (TWGBS) was performed as recently published (Wang et al., Nat. Prot., 2013). We used 8-30 ng genomic mouse DNA as input.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1274435</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1274435</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
      <EXPERIMENT_LINK>
        <XREF_LINK>
          <DB>gds</DB>
          <ID>301274435</ID>
        </XREF_LINK>
      </EXPERIMENT_LINK>
    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1274435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
