<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX9712714" alias="nanopore_tml_m2b">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX9712714</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB8622505">nanopore_tml_m2b</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>whole genome sequencing of bacterial isolate</TITLE>
    <STUDY_REF accession="SRP298792">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP298792</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB8622505">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Rapid Sequencing library preparation Kit (SQK-RAD004) was used to prepare DNA library;  sequencing was run using Flowcell version R9.4 (FLO-MIN106). The Guppy version 3.2.8 was used to perform basecalling to convert minION FAST5 outputs to Fastq files.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS7907580">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS7907580</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|liao.hsiaomei@gmail.com">Blastococcus sp. TML/M2B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>nanopore_tml_m2b</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX9712715" alias="MiSeq_tml_m2b_R1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX9712715</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB8622505">MiSeq_tml_m2b_R1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>whole genome sequencing of bacterial isolate</TITLE>
    <STUDY_REF accession="SRP298792">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP298792</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB8622505">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>DNA library was prepared by NexTera XT library kit; the library was sequenced using Illumina MiSeq with 2  150 bp pair-ended sequencing mode.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS7907580">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS7907580</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|liao.hsiaomei@gmail.com">Blastococcus sp. TML/M2B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>MiSeq_tml_m2b_R1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX9712716" alias="nanopore_tml_c7b">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX9712716</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB8622505">nanopore_tml_c7b</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>whole genome sequencing of bacterial isolate</TITLE>
    <STUDY_REF accession="SRP298792">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP298792</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB8622505">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Rapid Sequencing library preparation Kit (SQK-RAD004) was used to prepare DNA library;  sequencing was run using Flowcell version R9.4 (FLO-MIN106). The Guppy version 3.2.8 was used to perform basecalling to convert minION FAST5 outputs to Fastq files.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS7907581">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS7907581</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|liao.hsiaomei@gmail.com">Blastococcus sp. TML/C7B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>nanopore_tml_c7b</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX9712717" alias="MiSeq_tml_c7b_R1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX9712717</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB8622505">MiSeq_tml_c7b_R1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>whole genome sequencing of bacterial isolate</TITLE>
    <STUDY_REF accession="SRP298792">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP298792</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB8622505">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>DNA library was prepared by NexTera XT library kit; the library was sequenced using Illumina MiSeq with 2  150 bp pair-ended sequencing mode.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS7907581">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS7907581</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|liao.hsiaomei@gmail.com">Blastococcus sp. TML/C7B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>MiSeq_tml_c7b_R1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
