SRX9786735 GSM5006264 SRP300538 SRS7973628 GSM5006264 ATAC-seq GENOMIC other ATAC-seq reactions were performed using an established protocol (Buenrostro et al PMID: 25559105) hiPSC-derived microglia (50K cells) from each patient line were collected and processed as previously described (Abud et al. 2017). Samples were either processed at New York Genome Center or at UCI's Genomics High-Throughput Facility and sequenced as 50 bp paired-end reads on a HiSeq 2500 and 100 bp paired-end reads on a HiSeq 4000, respectively. Illumina HiSeq 2500 gds 305006264 GSM5006264 GEO Accession GSM5006264 SRX9786736 GSM5006265 SRP300538 SRS7973629 GSM5006265 ATAC-seq GENOMIC other ATAC-seq reactions were performed using an established protocol (Buenrostro et al PMID: 25559105) hiPSC-derived microglia (50K cells) from each patient line were collected and processed as previously described (Abud et al. 2017). Samples were either processed at New York Genome Center or at UCI's Genomics High-Throughput Facility and sequenced as 50 bp paired-end reads on a HiSeq 2500 and 100 bp paired-end reads on a HiSeq 4000, respectively. Illumina HiSeq 2500 gds 305006265 GSM5006265 GEO Accession GSM5006265 SRX9786737 GSM5006266 SRP300538 SRS7973630 GSM5006266 ATAC-seq GENOMIC other ATAC-seq reactions were performed using an established protocol (Buenrostro et al PMID: 25559105) hiPSC-derived microglia (50K cells) from each patient line were collected and processed as previously described (Abud et al. 2017). Samples were either processed at New York Genome Center or at UCI's Genomics High-Throughput Facility and sequenced as 50 bp paired-end reads on a HiSeq 2500 and 100 bp paired-end reads on a HiSeq 4000, respectively. Illumina HiSeq 4000 gds 305006266 GSM5006266 GEO Accession GSM5006266