SRX10169435 Rhizosphere_control_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2500 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319547 Rhizosphere_control_V4 Rhizosphere_control_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169436 Rhizosphere_BTH_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2501 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319548 Rhizosphere_BTH_V4 Rhizosphere_BTH_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169437 Phyllosphere_BTH_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2504 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319549 Phyllosphere_BTH_V4 Phyllosphere_BTH_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169438 Phyllosphere_CHT_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2505 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319550 Phyllosphere_CHT_V4 Phyllosphere_CHT_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169439 Carposphere_control_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2506 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319551 Carposphere_control_V4 Carposphere_control_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169440 Carposphere_BTH_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2507 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319552 Carposphere_BTH_V4 Carposphere_BTH_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169441 Carposphere_CHT_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2508 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319553 Carposphere_CHT_V4 Carposphere_CHT_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169442 Carposphere_ABA_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2509 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319555 Carposphere_ABA_V4 Carposphere_ABA_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169443 Rhizosphere_control_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2510 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319554 Rhizosphere_control_ITS2 Rhizosphere_control_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169444 Rhizosphere_BTH_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2511 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319556 Rhizosphere_BTH_ITS2 Rhizosphere_BTH_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169445 Rhizosphere_CHT_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2512 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319557 Rhizosphere_CHT_ITS2 Rhizosphere_CHT_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169446 Phyllosphere_control_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2513 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319558 Phyllosphere_control_ITS2 Phyllosphere_control_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169447 Phyllosphere_BTH_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2514 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319559 Phyllosphere_BTH_ITS2 Phyllosphere_BTH_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169448 Phyllosphere_CHT_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2515 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319561 Phyllosphere_CHT_ITS2 Phyllosphere_CHT_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169449 Carposphere_control_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2515 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319560 Carposphere_control_ITS2 Carposphere_control_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169450 Carposphere_BTH_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2515 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319562 Carposphere_BTH_ITS2 Carposphere_BTH_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169451 Carposphere_CHT_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2515 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319563 Carposphere_CHT_ITS2 Carposphere_CHT_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169452 Carposphere_ABA_ITS2 SRP308213 bp0 Amplicon sequencing analysis by targeting the ITS2 region for fungi (amplified with the fITS7 and ITS4 primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the reverse primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2515 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319564 Carposphere_ABA_ITS2 Carposphere_ABA_ITS2 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169453 Rhizosphere_CHT_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2502 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319566 Rhizosphere_CHT_V4 Rhizosphere_CHT_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500 SRX10169454 Phyllosphere_control_V4 SRP308213 bp0 Amplicon sequencing analysis by targeting the V4 region of the 16S rRNA gene for prokaryotes (amplified with 515f - 806r primer pair). A two-step amplification protocol was implemented, to construct amplicon libraries. A unique 12-bp index was added to the forward primer that served as a barcode to identify sequencing products in multiplexed libraries. 2x250 bp pair-end sequencing via the HiSeq2503 platform (Illumina, San Diego, USA) was performed at the Genome sequencing centre of the Brigham Young University (Provo, UT, USA). SRS8319565 Phyllosphere_control_V4 Phyllosphere_control_V4 AMPLICON GENOMIC PCR Illumina HiSeq 2500