SRX10329014 TAG001 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 72 h after inoculation treatment were taken, RNA was extracted using the CTABacidic phenolic method. Pair-end high-throughput sequencing was performed on the Illumina HiSeq 2000 sequencing platform, and the sequencing raw reads were all 150 bp in length. SRS8448904 CKh24_R1 TAG001 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329015 TAG002 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 73 h after inoculation treatment were tak BoldBold2' B $ SRS8448907 CKh24_R2 TAG002 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329016 TAG011 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 82 h after inoculation treatment were tak BoldBold2' B $ SRS8448906 CKv72_R1 TAG011 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329017 TAG012 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 83 h after inoculation treatment were tak BoldBold2' B $ SRS8448912 CKv72_R2 TAG012 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329018 TAG013 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 84 h after inoculation treatment were tak BoldBold2' B $ SRS8448905 TA01-7Gh24_R1 TAG013 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329019 TAG014 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 85 h after inoculation treatment were tak BoldBold2' B $ SRS8448908 TA01-7Gh24_R2 TAG014 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329020 TAG015 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 86 h after inoculation treatment were tak BoldBold2' B $ SRS8448909 TA01-7Gh48_R1 TAG015 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329021 TAG016 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 87 h after inoculation treatment were tak BoldBold2' B $ SRS8448910 TA01-7Gh48_R2 TAG016 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329022 TAG017 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 88 h after inoculation treatment were tak BoldBold2' B $ SRS8448911 TA01-7Gh72_R1 TAG017 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329023 TAG018 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 89 h after inoculation treatment were tak BoldBold2' B $ SRS8448913 TA01-7Gh72_R2 TAG018 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329024 TAG019 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 90 h after inoculation treatment were tak BoldBold2' B $ SRS8448914 TA01-7Gv24_R1 TAG019 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329025 TAG020 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 91 h after inoculation treatment were tak BoldBold2' B $ SRS8448915 TA01-7Gv24_R2 TAG020 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329026 TAG003 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 74 h after inoculation treatment were tak BoldBold2' B $ SRS8448916 CKh48_R1 TAG003 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329027 TAG021 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 92 h after inoculation treatment were tak BoldBold2' B $ SRS8448917 TA01-7Gv48_R1 TAG021 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329028 TAG022 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 93 h after inoculation treatment were tak BoldBold2' B $ SRS8448919 TA01-7Gv48_R2 TAG022 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329029 TAG023 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 94 h after inoculation treatment were tak BoldBold2' B $ SRS8448918 TA01-7Gv72_R1 TAG023 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329030 TAG024 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 95 h after inoculation treatment were tak BoldBold2' B $ SRS8448920 TA01-7Gv72_R2 TAG024 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329031 TAG004 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 75 h after inoculation treatment were tak BoldBold2' B $ SRS8448921 CKh48_R2 TAG004 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329032 TAG005 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 76 h after inoculation treatment were tak BoldBold2' B $ SRS8448922 CKh72_R1 TAG005 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329033 TAG006 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 77 h after inoculation treatment were tak BoldBold2' B $ SRS8448923 CKh72_R2 TAG006 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329034 TAG007 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 78 h after inoculation treatment were tak BoldBold2' B $ SRS8448924 CKv24_R1 TAG007 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329035 TAG008 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 79 h after inoculation treatment were tak BoldBold2' B $ SRS8448925 CKv24_R2 TAG008 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329036 TAG009 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 80 h after inoculation treatment were tak BoldBold2' B $ SRS8448926 CKv48_R1 TAG009 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500 SRX10329037 TAG010 SRP310365 bp0 Cotton seedlings with root-tip cuts at the two-true-leaf stage were used to inoculate 20 mL of V. dahliae spore suspension with 1 107 spores mL-1, and water was used as mock treatment. Roots 0 h, 24 h, 48 h, and 81 h after inoculation treatment were tak BoldBold2' B $ SRS8448927 CKv48_R2 TAG010 RNA-Seq TRANSCRIPTOMIC cDNA Illumina HiSeq 2500