SRS8471988 SAMN18311921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000001602/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-000001602/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.505743027 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.746570587 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.502702713 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.516542435 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8471989 SAMN18311912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000001625/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000001625/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.196100235 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.988689423 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.422718048 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.370752335 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8471990 SAMN18311911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000001609/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-000001609/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.92309761 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.789915085 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.853225708 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.766296387 lineage/clade name B.1.361 host_race Asian BioSampleModel Pathogen.cl SRS8471991 SAMN18312011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002492/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002492/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.979045868 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.07154274 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.134168625 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Black or African American BioSampleModel Pathogen.cl SRS8471992 SAMN18312012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002413/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002413/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.443834305 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.294124603 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.907205582 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.934221268 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8471993 SAMN18312013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000002429/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000002429/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.486051559 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.908798218 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.901584625 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.758651733 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8471994 SAMN18312014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/ID-CDC-STM-000002445/2021 GISAID_virus_name hCoV-19/USA/ID-CDC-STM-000002445/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Idaho lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.048866272 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.976613998 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.15140152 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.735080719 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8471995 SAMN18312015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000002453/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-000002453/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.918283463 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.100086212 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.921485901 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.937250137 lineage/clade name B.1.1.4 host_race White BioSampleModel Pathogen.cl SRS8471996 SAMN18312016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002461/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002461/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.216268539 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.486982346 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.300214767 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.260908127 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8471997 SAMN18312017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002469/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002469/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.812953949 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.978794098 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.556520462 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8471998 SAMN18312018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000002477/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000002477/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.811115265 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.162368774 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.812475204 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.809030533 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472002 SAMN18311922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AR-CDC-STM-000001610/2021 GISAID_virus_name hCoV-19/USA/AR-CDC-STM-000001610/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arkansas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.607486725 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.734092712 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.531339645 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.655647278 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472003 SAMN18312022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000002430/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000002430/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.148563385 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.287298203 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.030281067 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.963420868 lineage/clade name B.1.400 host_race White BioSampleModel Pathogen.cl SRS8472001 SAMN18312021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000002422/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000002422/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.179798126 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.034341812 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.624700546 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.687364578 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8472005 SAMN18312024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002446/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002446/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.564378738 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.663211823 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.793455124 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.666570663 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472000 SAMN18312020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002406/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002406/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.205612183 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.228385925 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.079454422 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8471999 SAMN18312019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002493/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002493/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.115774155 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.674514771 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.437335968 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8472008 SAMN18312028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000002407/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-000002407/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.804588318 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.028432846 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.664131165 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.829849243 lineage/clade name B.1.232 host_race Unspecified BioSampleModel Pathogen.cl SRS8472004 SAMN18312023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002438/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002438/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.515266418 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.435184479 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.747877121 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.788459778 lineage/clade name B.1.1.4 host_race White BioSampleModel Pathogen.cl SRS8472010 SAMN18312029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IA-CDC-STM-000002415/2021 GISAID_virus_name hCoV-19/USA/IA-CDC-STM-000002415/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Iowa lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.092309952 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.550804138 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.322305679 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.585323334 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8472006 SAMN18312025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002470/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002470/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.517366409 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.153329849 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.806329727 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.755092621 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472012 SAMN18311923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000001618/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000001618/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.930894852 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.77763176 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.834999084 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.759298325 lineage/clade name B.1.404 host_race Asian BioSampleModel Pathogen.cl SRS8472007 SAMN18312027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002494/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002494/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.188474655 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.605932236 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.313890457 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.078752518 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472011 SAMN18312030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000002423/2021 GISAID_virus_name hCoV-19/USA/HI-CDC-STM-000002423/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Hawaii lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.543619156 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.58361721 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.335185051 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.273471832 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8472015 SAMN18312032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002439/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002439/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.01591301 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.246437073 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.808662415 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472013 SAMN18312031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002431/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002431/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.423334122 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.890611649 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.309177399 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.448139191 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472009 SAMN18312026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/ME-CDC-STM-000002486/2021 GISAID_virus_name hCoV-19/USA/ME-CDC-STM-000002486/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Maine lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.215982437 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.186956406 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.221735001 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.229955673 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472016 SAMN18312033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002447/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002447/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.32623291 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.481611252 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.940652847 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.139629364 lineage/clade name B.1.433 host_race White BioSampleModel Pathogen.cl SRS8472019 SAMN18312037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000002416/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000002416/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.033346176 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.228778839 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.38142395 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.835910797 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472017 SAMN18312035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002487/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002487/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.527292252 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.976284027 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.96603775 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.739253998 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472014 SAMN18312034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002463/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002463/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.181680679 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.705669403 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.390951157 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.346 host_race White BioSampleModel Pathogen.cl SRS8472022 SAMN18312040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002448/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002448/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.212711334 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.09649086 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.998537064 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.064680099 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472020 SAMN18312039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002440/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002440/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.448516846 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.72321701 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.520217896 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.514303207 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472021 SAMN18312038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002432/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002432/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.361356735 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 13.426674843 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 14.285093307 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 14.213391304 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8472018 SAMN18312036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000002495/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000002495/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.807645798 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.732789993 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.300680161 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.255226135 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472026 SAMN18312043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/UT-CDC-STM-000002488/2021 GISAID_virus_name hCoV-19/USA/UT-CDC-STM-000002488/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Utah lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.362762451 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.743190765 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.476964951 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.398756027 lineage/clade name B.1.1.207 host_race Unspecified BioSampleModel Pathogen.cl SRS8472024 SAMN18312041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002464/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002464/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.579866409 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.588727951 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.437925339 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.51051712 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472025 SAMN18312042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000002480/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000002480/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.482563019 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.128974915 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.605026245 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.663257599 lineage/clade name B.1.265 host_race White BioSampleModel Pathogen.cl SRS8472029 SAMN18312045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002925/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002925/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.786880493 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.126256943 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.314176559 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.042520523 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472023 SAMN18311924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001634/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001634/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.801847458 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.447525024 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.048440933 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.105804443 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472028 SAMN18312046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002941/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002941/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.296092987 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.225227356 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.81165123 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.592264175 lineage/clade name B.1.311 host_race Unspecified BioSampleModel Pathogen.cl SRS8472032 SAMN18312048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002989/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002989/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.177431107 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.774147034 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.566818237 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.765508652 lineage/clade name B.1.361 host_race Black or African American BioSampleModel Pathogen.cl SRS8472033 SAMN18312050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002918/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002918/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.866735458 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.366764069 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.201152802 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.834148407 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472034 SAMN18311925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000001642/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000001642/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.578210831 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.159452438 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.894359589 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.881242752 lineage/clade name B.1.400 host_race White BioSampleModel Pathogen.cl SRS8472035 SAMN18312051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000002926/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000002926/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.194660187 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.873149872 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.628519058 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.447486877 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472036 SAMN18312053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000002950/2021 GISAID_virus_name hCoV-19/USA/WA-CDC-STM-000002950/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Washington lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.875371933 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.902462006 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.705833435 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.76209259 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472037 SAMN18312052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000002934/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-000002934/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.833469391 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.27387619 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.839923859 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.998191833 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472038 SAMN18312054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002958/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002958/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.309425354 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.271406174 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.762552261 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.721401215 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472039 SAMN18312055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002966/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002966/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.929023743 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.450315475 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.475811005 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.207269669 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472040 SAMN18312056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002974/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002974/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.28886795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.298934937 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.629823685 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.801792145 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8472041 SAMN18312057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002982/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002982/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.186836243 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.758062363 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.751262665 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.460012436 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472042 SAMN18312058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000002903/2021 GISAID_virus_name hCoV-19/USA/RI-CDC-STM-000002903/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Rhode Island lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.888914108 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.513143539 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.156105042 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.369638443 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472043 SAMN18312060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002935/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002935/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.050758362 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.53707695 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.821640015 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.426044464 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8472030 SAMN18312047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000002949/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-000002949/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.056364059 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.639278412 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.256599426 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.941116333 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472027 SAMN18312044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002909/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002909/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.772914886 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.314325333 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.407325745 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.24943161 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472044 SAMN18312059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000002919/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000002919/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.424942017 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.990840912 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.601854324 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.649606705 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472047 SAMN18312062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002951/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002951/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.86211586 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.450376511 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.936079025 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.012153625 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472045 SAMN18311926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/HI-CDC-STM-000001650/2021 GISAID_virus_name hCoV-19/USA/HI-CDC-STM-000001650/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Hawaii lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.599645615 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.946956635 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.551980972 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.669057846 lineage/clade name B.1.429 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8472031 SAMN18312049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002910/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002910/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.534864426 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.179513931 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.712743759 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.754276276 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472050 SAMN18312065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002975/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002975/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.514627457 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.544500351 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.331689835 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.907535553 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8472048 SAMN18312063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002959/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002959/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.50761795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.714881897 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.672019958 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.666526794 lineage/clade name B.1.1.189 host_race White BioSampleModel Pathogen.cl SRS8472049 SAMN18312064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002967/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002967/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.893041611 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.831424713 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.886617661 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.783849716 lineage/clade name B.1.1.244 host_race Unspecified BioSampleModel Pathogen.cl SRS8472046 SAMN18312061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002943/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002943/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.251363754 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.652799606 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.575359344 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.256044388 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472054 SAMN18312069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000002936/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000002936/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.380472183 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.084587097 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.464279175 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.645025253 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472052 SAMN18312067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002904/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002904/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 5.138280392 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 5.129369259 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 5.154779911 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472053 SAMN18312068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002912/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002912/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.772741318 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.997894287 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.618839264 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.415449142 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472057 SAMN18312071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002952/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002952/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.450279236 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.768854141 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.375898361 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.358947754 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8472051 SAMN18312066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002991/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002991/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.783430099 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.395812988 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.164237976 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472056 SAMN18311927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000001658/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000001658/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.505056381 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.983613968 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.59031105 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.377439499 lineage/clade name A host_race Unspecified BioSampleModel Pathogen.cl SRS8472058 SAMN18312072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000002960/2021 GISAID_virus_name hCoV-19/USA/WI-CDC-STM-000002960/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Wisconsin lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.536611557 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.196643829 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.392553329 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.160266876 lineage/clade name B.1.3 host_race White BioSampleModel Pathogen.cl SRS8472061 SAMN18312074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002984/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002984/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.599935532 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.690748215 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.249206543 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.093069077 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8472055 SAMN18312070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002944/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002944/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.36227417 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.444232941 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.203521729 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.829046249 lineage/clade name B.1.115 host_race White BioSampleModel Pathogen.cl SRS8472060 SAMN18312075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002992/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002992/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.500127792 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.238296509 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.660161972 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.851793289 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472064 SAMN18312078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000002937/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-000002937/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.695001602 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.235748291 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.600667953 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.670537949 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472062 SAMN18312077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002913/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002913/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.737520218 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.138679504 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.966342926 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.966659546 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8472059 SAMN18312073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000002968/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000002968/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.341726303 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.331193924 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.023166656 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.19503212 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472065 SAMN18312076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002905/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002905/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.638326645 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.00699234 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.673007965 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.585126877 lineage/clade name B.1.1.119 host_race Unspecified BioSampleModel Pathogen.cl SRS8472068 SAMN18312081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002961/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002961/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.597190857 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.798563004 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.244625092 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.153869629 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8472066 SAMN18312080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002953/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002953/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.949245453 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.127426147 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.106533051 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.139490128 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472063 SAMN18312079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002945/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002945/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.79888916 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.221773148 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.953115463 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.73236084 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472071 SAMN18312085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002906/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002906/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.813055038 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.579381943 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.048782349 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.892311096 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472070 SAMN18312082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002969/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002969/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.798147202 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.815763474 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.273889542 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.130313873 lineage/clade name B.1.1.51 host_race White BioSampleModel Pathogen.cl SRS8472073 SAMN18312086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002914/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002914/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.813644409 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.064357758 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.612815857 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.685674667 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472067 SAMN18311928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000001666/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000001666/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.652061462 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.352609634 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.612567902 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.392765045 lineage/clade name B.1.369 host_race White BioSampleModel Pathogen.cl SRS8472069 SAMN18312083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002977/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002977/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.494560242 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.787174225 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.662042618 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.805137634 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8472072 SAMN18312084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002985/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002985/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.563552856 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.764026642 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.188297272 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.224048615 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8472074 SAMN18312087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002930/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002930/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.757745743 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.089427948 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.686929703 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Black or African American BioSampleModel Pathogen.cl SRS8472078 SAMN18311929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000001674/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000001674/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.550424576 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.575428009 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.229644775 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.308322906 lineage/clade name B.1.409 host_race Black or African American BioSampleModel Pathogen.cl SRS8472075 SAMN18312088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002938/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002938/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.765743256 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.825595856 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.499603271 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.42959404 lineage/clade name B.1.349 host_race Unspecified BioSampleModel Pathogen.cl SRS8472080 SAMN18312092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002994/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002994/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.578887939 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.72631073 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.098121643 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.821323395 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472076 SAMN18312089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002946/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002946/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.4532547 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.015850067 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.077850342 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.752105713 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8472082 SAMN18312094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/ME-CDC-STM-000002923/2021 GISAID_virus_name hCoV-19/USA/ME-CDC-STM-000002923/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Maine lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.329641342 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.816015244 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.941376686 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.875902176 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8472079 SAMN18312091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002978/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002978/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.24413681 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.901018143 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.120485306 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.530780792 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8472077 SAMN18312090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002970/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002970/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.485958099 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.079418182 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.948888779 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.878332138 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472085 SAMN18312097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000002955/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-000002955/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.073469162 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.834918976 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.781410217 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.600070953 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8472083 SAMN18312095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002939/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002939/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.09862709 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.479471207 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.500734329 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.452884674 lineage/clade name B.1.1.26 host_race White BioSampleModel Pathogen.cl SRS8472087 SAMN18312099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002971/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002971/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.724578857 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.673273087 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.986282349 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.008415222 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8472084 SAMN18312096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002947/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002947/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.469875336 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.672382355 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.072649002 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.20744133 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472089 SAMN18311930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000001682/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000001682/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.875911713 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.6522789 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.477201462 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.370393753 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472081 SAMN18312093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002907/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002907/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.150396347 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.295043945 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.506029129 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.403291702 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472088 SAMN18312100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002979/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002979/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.153289795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.073228836 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.750745773 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.665166855 lineage/clade name B.1.1.4 host_race American Indian or Alaska Native BioSampleModel Pathogen.cl SRS8472092 SAMN18312103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002924/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002924/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.206144333 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.808900833 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.471395493 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.631639481 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472090 SAMN18312101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002987/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002987/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.60858345 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.414455414 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.972320557 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.855138779 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472086 SAMN18312098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002963/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002963/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.543304443 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.597324371 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.436141968 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.89099884 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8472093 SAMN18312105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002940/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002940/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.683021545 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.322372437 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.865581512 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.850084305 lineage/clade name B.1.223 host_race Latino BioSampleModel Pathogen.cl SRS8472096 SAMN18312107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002956/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002956/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.508052826 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.138088226 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.706327438 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.620605469 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472094 SAMN18312104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002932/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002932/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.399635315 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.856483459 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.378009796 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.144517899 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472091 SAMN18312102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000002908/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000002908/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.827489853 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.314085007 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.898874283 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.586166382 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472099 SAMN18312110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002980/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002980/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.075685501 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.935308456 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.61239624 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.560424805 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472097 SAMN18312108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000002964/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-000002964/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.758197784 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.651756287 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.68522644 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.436603546 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472101 SAMN18311931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000001603/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000001603/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.798547745 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 13.880537033 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.50603199 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 14.885268211 lineage/clade name B.1.1.4 host_race White BioSampleModel Pathogen.cl SRS8472098 SAMN18312109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002972/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002972/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.368143082 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.571586609 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.165922165 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.005784988 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472103 SAMN18312111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002988/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002988/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.020704269 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.980476379 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.683002472 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.824756622 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472095 SAMN18312106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002948/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002948/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.471735001 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.518594742 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.309221268 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.111467361 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472102 SAMN18312112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003025/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003025/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.960975647 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.955682755 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8472106 SAMN18312115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000003049/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000003049/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.340248108 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.844072342 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.821231842 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.624605179 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472104 SAMN18312113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000003033/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000003033/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.440042496 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.707391739 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.369688034 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.348384857 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472100 SAMN18311913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001633/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001633/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.450462341 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.505048752 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.761077881 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.751756668 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472107 SAMN18312116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003081/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003081/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.0616436 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.750654221 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.413930893 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8472110 SAMN18312120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000003042/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000003042/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.287652969 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.328077316 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.66566658 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.77728653 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472108 SAMN18312117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000003089/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000003089/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.834180832 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.654317856 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.231538773 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.035621643 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8472105 SAMN18312114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000003041/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000003041/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.459184647 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.079849243 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.02961731 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.710557938 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472111 SAMN18312118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003002/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003002/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.710056305 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.808980942 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.445598602 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Black or African American BioSampleModel Pathogen.cl SRS8472112 SAMN18311932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000001611/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000001611/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.684539795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.205900192 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.074195862 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.069828033 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8472109 SAMN18312119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003018/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003018/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.767602921 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.691091537 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.263809204 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.861534119 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472114 SAMN18312122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/UT-CDC-STM-000003074/2021 GISAID_virus_name hCoV-19/USA/UT-CDC-STM-000003074/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Utah lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.835622787 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.388479233 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.415245056 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.052940369 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8472115 SAMN18312123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000003090/2021 GISAID_virus_name hCoV-19/USA/WI-CDC-STM-000003090/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Wisconsin lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.223686218 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.9257164 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.749902725 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.504648209 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472113 SAMN18312121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000003050/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000003050/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.539596558 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.362197876 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.22514534 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.213274002 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8472117 SAMN18312125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000003011/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000003011/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.616966248 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.162731171 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.191020966 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.377874374 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472118 SAMN18312126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003019/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003019/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.801628113 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.843408585 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.478992462 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.379171371 lineage/clade name B.1.311 host_race Black or African American BioSampleModel Pathogen.cl SRS8472116 SAMN18312124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000003003/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000003003/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.615053177 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.855134964 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.565364838 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.284835815 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472120 SAMN18312128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003035/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003035/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.7310009 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.76748085 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.579658508 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.476257324 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472121 SAMN18312129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000003043/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000003043/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.881082535 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.815315247 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.523262024 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.61048317 lineage/clade name B.1.427 host_race Asian BioSampleModel Pathogen.cl SRS8472119 SAMN18312127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003027/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003027/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.728948593 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.461315155 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.193611145 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.809370041 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472123 SAMN18311933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001619/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001619/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.155227661 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.680337906 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.619846344 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472124 SAMN18312132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000003091/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000003091/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.406490326 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.718549728 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.436288834 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8472122 SAMN18312130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000003067/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000003067/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.09995079 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.345890045 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.043643951 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.930582047 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472126 SAMN18312133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000003012/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000003012/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.290039063 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.667077065 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.696528435 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.527761459 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472127 SAMN18312134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000003020/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000003020/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.276023865 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.511833191 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.023517609 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.755178452 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472125 SAMN18312131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003075/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003075/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.80755043 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.785093307 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.403717041 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.372308731 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8472129 SAMN18312136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AR-CDC-STM-000003036/2021 GISAID_virus_name hCoV-19/USA/AR-CDC-STM-000003036/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Arkansas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.413074493 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.320011139 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.766536713 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.722930908 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8472130 SAMN18312137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000003052/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000003052/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.608879089 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.123422623 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.418226242 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.587921143 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472128 SAMN18312135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000003028/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000003028/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.812652588 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.237958908 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.789669037 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.991548538 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472132 SAMN18312140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003005/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003005/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.567640305 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.796609879 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.657817841 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8472135 SAMN18312141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003013/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003013/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.147453308 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.901006699 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.088254929 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.740047455 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472133 SAMN18312139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000003092/2021 GISAID_virus_name hCoV-19/USA/CO-CDC-STM-000003092/2021 collected_by Helix collection_date 2021-01-17 geo_loc_name USA: Colorado lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.805904388 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.762483597 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.880407333 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.39431572 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8472137 SAMN18312143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000003029/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000003029/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.462583542 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.602127075 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.417703629 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.20357132 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472131 SAMN18312138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000003084/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000003084/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.316028595 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.584157944 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.778791428 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472139 SAMN18312145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000003045/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-000003045/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.163072586 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.994672775 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.965707779 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.044851303 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472136 SAMN18312142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000003021/2021 GISAID_virus_name hCoV-19/USA/OK-CDC-STM-000003021/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Oklahoma lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.343517303 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.071430206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.842388153 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.717334747 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472141 SAMN18312148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000003014/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000003014/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.806093216 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.782943726 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.751281738 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.714981079 lineage/clade name B.1.409 host_race White BioSampleModel Pathogen.cl SRS8472138 SAMN18312144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003037/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003037/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.288761139 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.392219543 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.048379898 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.039978027 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472134 SAMN18311934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001627/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001627/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.418668747 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.564056396 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.299928665 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472142 SAMN18312147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000003085/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-000003085/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.035175323 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.499670029 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.25658226 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.242225647 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8472145 SAMN18311935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000001635/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000001635/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.730855942 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.776155472 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.310930252 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.389476776 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472143 SAMN18312149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000003022/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-000003022/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.178194046 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.492938995 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.159885406 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.082361221 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472147 SAMN18312152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000003046/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000003046/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.748779297 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.811485291 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.603233337 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.592111588 lineage/clade name B.1.232 host_race Unspecified BioSampleModel Pathogen.cl SRS8472140 SAMN18312146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003069/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003069/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.800016403 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.299024582 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.050727844 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Black or African American BioSampleModel Pathogen.cl SRS8472149 SAMN18312154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000003070/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000003070/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.594003677 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.914476395 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.115180969 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.732473373 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8472146 SAMN18312151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000003038/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-000003038/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.786521912 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.047952652 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.808303833 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.540445328 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472151 SAMN18312155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NH-CDC-STM-000003078/2021 GISAID_virus_name hCoV-19/USA/NH-CDC-STM-000003078/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: New Hampshire lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.591632843 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.629283905 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.789857864 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.813220978 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472148 SAMN18312153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000003062/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000003062/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.627613068 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.119028091 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.801023483 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.633401871 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472153 SAMN18312158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000003015/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000003015/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.73666954 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.296451569 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.462242126 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.502983093 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472144 SAMN18312150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000003030/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000003030/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.794506073 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.206291199 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.516263962 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.789758682 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8472155 SAMN18311936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000001643/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000001643/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.815601349 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.47674942 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.955089569 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.126876831 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472152 SAMN18312157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000003007/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000003007/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.3640728 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.866729736 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.524713516 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.628116608 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472157 SAMN18312161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000003047/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000003047/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.958673477 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.837154388 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.784137726 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.180454254 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472154 SAMN18312159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000003031/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000003031/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.258512497 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.767822266 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.299957275 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.218490601 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472159 SAMN18312163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003071/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003071/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.291828156 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.437952042 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.531892776 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.364185333 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472150 SAMN18312156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000003094/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000003094/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.470916748 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.537845612 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.160411835 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.104883194 lineage/clade name B.1.111 host_race White BioSampleModel Pathogen.cl SRS8472161 SAMN18312165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000003087/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000003087/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.717798233 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.642442703 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.940681458 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.23787117 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472158 SAMN18312162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003063/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003063/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.478633881 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.703208923 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.202833176 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.335506439 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472163 SAMN18312167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000003032/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-000003032/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.596336365 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.90045929 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.197206497 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.669816971 lineage/clade name B.1.1.216 host_race White BioSampleModel Pathogen.cl SRS8472160 SAMN18312164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003079/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003079/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.380090714 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.370830536 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.132509232 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Asian BioSampleModel Pathogen.cl SRS8472165 SAMN18312169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000003048/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000003048/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.346786499 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.275226593 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.041988373 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.178144455 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472156 SAMN18312160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000003039/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000003039/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.523172379 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.116744995 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.817901611 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.921295166 lineage/clade name B.1.2 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8472167 SAMN18312171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000003064/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000003064/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.095872879 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.543584824 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.044881821 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.762012482 lineage/clade name B.1.311 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8472164 SAMN18312168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000003040/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-000003040/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 39.171703339 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.351072311 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.712924957 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.747560501 lineage/clade name B.1.1.216 host_race White BioSampleModel Pathogen.cl SRS8472166 SAMN18312170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000003056/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000003056/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.996301651 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.362197876 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.81769371 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.795153618 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472162 SAMN18312166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000003024/2021 GISAID_virus_name hCoV-19/USA/OR-CDC-STM-000003024/2021 collected_by Helix collection_date 2021-01-18 geo_loc_name USA: Oregon lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.763422012 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.774253845 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.413228989 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.401033401 lineage/clade name B.1.243 host_race Asian BioSampleModel Pathogen.cl SRS8472171 SAMN18311939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000001675/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000001675/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.902311325 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.715810776 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.421628952 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.303628922 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472169 SAMN18312172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000003088/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000003088/2021 collected_by Helix collection_date 2021-01-16 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.625432968 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.776584625 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.332468033 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8472173 SAMN18311914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000001641/2021 GISAID_virus_name hCoV-19/USA/WI-CDC-STM-000001641/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Wisconsin lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.145610809 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.592660904 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.946136475 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.885284424 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472170 SAMN18311938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000001667/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000001667/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.222677231 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.852457047 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.42616272 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.54873085 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472168 SAMN18311937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000001659/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000001659/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.218353271 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.951202393 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.766906738 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.73872757 lineage/clade name P.2 host_race Asian BioSampleModel Pathogen.cl SRS8472174 SAMN18311941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000001691/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000001691/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.289340973 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.497898102 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.182556152 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.031152725 lineage/clade name B.1.448 host_race White BioSampleModel Pathogen.cl SRS8472177 SAMN18311944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000001636/2021 GISAID_virus_name hCoV-19/USA/CO-CDC-STM-000001636/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Colorado lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.477705002 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.724327087 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.623291016 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.64317894 lineage/clade name B.1.427 host_race Asian BioSampleModel Pathogen.cl SRS8472175 SAMN18311942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000001604/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000001604/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.875717163 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.313489914 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.6802845 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.438085556 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8472179 SAMN18311946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PR-CDC-STM-000001660/2021 GISAID_virus_name hCoV-19/USA/PR-CDC-STM-000001660/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Puerto Rico lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.713834763 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.777187347 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.543773651 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.39333725 lineage/clade name B.1.400 host_race Unspecified BioSampleModel Pathogen.cl SRS8472172 SAMN18311940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000001683/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000001683/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.699926376 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.031990051 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.889972687 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.581073761 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472178 SAMN18311945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000001644/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000001644/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.719732285 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.293315887 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.013759613 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.761316299 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472180 SAMN18311947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001676/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001676/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 36.551334381 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.148435593 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.785306931 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.757717133 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8472183 SAMN18311950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001613/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001613/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.092508316 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.830036163 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.626869202 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472176 SAMN18311943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000001620/2021 GISAID_virus_name hCoV-19/USA/WV-CDC-STM-000001620/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: West Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.210943222 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.209547043 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.130271912 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.900693893 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472185 SAMN18311951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001621/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001621/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.911899567 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.84879303 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.949838638 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472182 SAMN18311949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000001605/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000001605/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.821983337 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.77381897 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.755941391 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.770687103 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472187 SAMN18311953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000001637/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000001637/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.082565308 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.959844589 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.52085495 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.484241486 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472184 SAMN18311915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000001649/2021 GISAID_virus_name hCoV-19/USA/MO-CDC-STM-000001649/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Missouri lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.558774948 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.727586746 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.947246552 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.271572113 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472189 SAMN18311955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000001653/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000001653/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.905603409 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.638273239 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.878026962 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.159187317 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472181 SAMN18311948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000001684/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-000001684/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.630172729 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.867998123 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.240953445 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.629478455 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472191 SAMN18311957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000001677/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000001677/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.04501152 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.113090515 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.124996185 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.105201721 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472188 SAMN18311954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000001645/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000001645/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.439161301 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.900093079 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.582580566 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.509145737 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472190 SAMN18311956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001669/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001669/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.9569664 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.953723907 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.679834366 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.607826233 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8472186 SAMN18311952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000001629/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000001629/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.023799896 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.750322342 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.298984528 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.473482132 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472195 SAMN18311916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000001657/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000001657/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.776205063 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.507097244 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.913013458 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.159009933 lineage/clade name B.1.1.4 host_race White BioSampleModel Pathogen.cl SRS8472193 SAMN18311959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001614/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001614/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.110124588 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.307880402 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.191795349 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472197 SAMN18311962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000001646/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000001646/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.52863884 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.29060936 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.664987564 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.773797989 lineage/clade name B.1.240 host_race White BioSampleModel Pathogen.cl SRS8472194 SAMN18311960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001630/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001630/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.538433075 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.035116196 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.67329216 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.779098511 lineage/clade name B.1.1.44 host_race Latino BioSampleModel Pathogen.cl SRS8472192 SAMN18311958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001693/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001693/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.758955002 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.227500916 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.761035919 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.01067543 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8472198 SAMN18311963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001654/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001654/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.232383728 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.144485474 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.532367706 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.677703857 lineage/clade name B.1 host_race Latino BioSampleModel Pathogen.cl SRS8472201 SAMN18311966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OK-CDC-STM-000001678/2021 GISAID_virus_name hCoV-19/USA/OK-CDC-STM-000001678/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Oklahoma lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.365028381 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.256969452 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.241695404 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.864929199 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472199 SAMN18311965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000001670/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000001670/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.852241516 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.622285843 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.56537056 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.508054733 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8472196 SAMN18311961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000001638/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000001638/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.898237228 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.939405441 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.782239914 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.819150925 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472202 SAMN18311967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000001686/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000001686/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.300281525 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.760673523 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.601493835 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.452581406 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472203 SAMN18311968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000001694/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000001694/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.828430176 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.582229614 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.32037735 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.358049393 lineage/clade name B.1.1.222 host_race Asian BioSampleModel Pathogen.cl SRS8472206 SAMN18311917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000001665/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-000001665/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.422676086 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.959886551 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.442604065 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.834533691 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472200 SAMN18311964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000001662/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000001662/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.860982895 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.819963455 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.004646301 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.326972961 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472205 SAMN18311970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000001615/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000001615/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.621229172 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.735427856 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.529495239 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.240520477 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472207 SAMN18311971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001639/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001639/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.080661774 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.824417114 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.602762222 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.634185791 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472204 SAMN18311969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001607/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001607/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.802524567 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.956289291 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.101442337 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472209 SAMN18311973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000001655/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000001655/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.853963852 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.974355698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.631889343 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.646640778 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472210 SAMN18311974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001663/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001663/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.327377319 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.80723381 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.535013199 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472208 SAMN18311972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000001647/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000001647/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.941936493 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.813598633 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.438148499 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.39966774 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8472212 SAMN18311977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000001695/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000001695/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.73110199 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.594802856 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.986387253 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472213 SAMN18311976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000001679/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000001679/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.490270615 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.569892883 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.210571289 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.786119461 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8472211 SAMN18311975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000001671/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000001671/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.280830383 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.226888657 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.109155655 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.744525909 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472215 SAMN18311979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000001616/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000001616/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.194383621 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.692512512 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.41516304 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.583770752 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8472216 SAMN18311980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000001640/2021 GISAID_virus_name hCoV-19/USA/WA-CDC-STM-000001640/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Washington lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.169946671 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.519668579 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.796983719 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.835357666 lineage/clade name B.1.311 host_race Asian BioSampleModel Pathogen.cl SRS8472214 SAMN18311978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000001608/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000001608/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.916597366 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.32670784 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.267324448 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.167667389 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8472218 SAMN18311981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000001648/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000001648/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.832971573 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.761284828 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.77063179 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.526584625 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472219 SAMN18311982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000001656/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000001656/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 12.435949326 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 12.9322052 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472217 SAMN18311918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000001673/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000001673/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.096757889 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.113494873 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.411985397 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.87071228 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8472221 SAMN18311984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002409/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002409/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.790334702 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.149835587 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.803107262 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.635843277 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472222 SAMN18311985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000002417/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000002417/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.998430252 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.21890831 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.744628906 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.598194122 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472220 SAMN18311983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000001672/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000001672/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.306379318 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.794517517 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.207071304 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.814220428 lineage/clade name B.1.433 host_race White BioSampleModel Pathogen.cl SRS8472224 SAMN18311987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000002441/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000002441/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.039035797 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.237863541 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.216775894 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.398790359 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8472225 SAMN18311988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002465/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002465/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.528409958 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.484119415 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.97215271 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.086048126 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472223 SAMN18311986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000002425/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000002425/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.926540375 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.921449661 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.985118866 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.795295715 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472227 SAMN18311919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-000001681/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-000001681/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.140232086 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.086137772 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.83306694 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.686048508 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472226 SAMN18311989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002473/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002473/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.325111389 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.681087494 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.691822052 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472230 SAMN18311992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002426/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002426/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.783521652 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.029214859 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.851383209 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.76527977 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472228 SAMN18311990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000002481/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000002481/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.117740631 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.808950424 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.492301941 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.548326492 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472229 SAMN18311991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002410/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002410/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.765758514 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.228654861 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.203577042 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.192829132 lineage/clade name P.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472232 SAMN18311994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002450/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002450/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.769800186 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.966268539 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.120822906 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.806060791 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472233 SAMN18311995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002458/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002458/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.172065735 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.527828217 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.749700546 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.667156219 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8472231 SAMN18311993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002434/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002434/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.29476738 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.83877182 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.289642334 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.197525024 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8472235 SAMN18311997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002482/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002482/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.593175888 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.123746872 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.822061539 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.989210129 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8472236 SAMN18311998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000002403/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000002403/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.539161682 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.703918457 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.5066185 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.639566422 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472238 SAMN18312000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000002427/2021 GISAID_virus_name hCoV-19/USA/WV-CDC-STM-000002427/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: West Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.046451569 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.412784576 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.322975159 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.332626343 lineage/clade name B.1.177 host_race Unspecified BioSampleModel Pathogen.cl SRS8472234 SAMN18311996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000002474/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000002474/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.136392593 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.527730942 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.529518127 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.539070129 lineage/clade name B.1.1.207 host_race White BioSampleModel Pathogen.cl SRS8472237 SAMN18311999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002419/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002419/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.346277237 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.52425766 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.000053406 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.977775574 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472240 SAMN18312001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000002451/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000002451/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.765892029 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.8788414 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.318571091 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.748338699 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8472239 SAMN18311920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000001689/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-000001689/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.249052048 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.804143906 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.525667191 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.385698318 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8472241 SAMN18312002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000002475/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000002475/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.832963943 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.782844543 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.345430374 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.125371933 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8472243 SAMN18312004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000002404/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-000002404/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.920158386 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.548498154 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.172842026 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.209514618 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8472244 SAMN18312005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000002420/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000002420/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.526842117 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.011903763 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.818504333 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.957475662 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8472242 SAMN18312003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002491/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002491/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.181348801 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.390842438 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.586353302 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.686080933 lineage/clade name B.1.1.304 host_race White BioSampleModel Pathogen.cl SRS8472246 SAMN18312007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000002436/2021 GISAID_virus_name hCoV-19/USA/RI-CDC-STM-000002436/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Rhode Island lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.819538116 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.422128677 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.05304718 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8472247 SAMN18312008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000002452/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000002452/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.898862839 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.090103149 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.540716171 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.1.28 host_race Unspecified BioSampleModel Pathogen.cl SRS8472245 SAMN18312006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000002428/2021 GISAID_virus_name hCoV-19/USA/NM-CDC-STM-000002428/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: New Mexico lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.90763092 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.462272644 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.936555862 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.040348053 lineage/clade name B.1.1.231 host_race White BioSampleModel Pathogen.cl SRS8472249 SAMN18312010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000002484/2021 GISAID_virus_name hCoV-19/USA/MO-CDC-STM-000002484/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Missouri lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.837158203 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.321674347 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.085460663 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.254346848 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8472248 SAMN18312009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000002468/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000002468/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.990732193 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.766048431 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.653486252 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.537807465 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl