SRS8462706 SAMN18313238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-0000014-G03/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-0000014-G03/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.056777954 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.998620987 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.416027069 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.550956726 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8462708 SAMN18313137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-0000025-A03/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-0000025-A03/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.111642838 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.664272308 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.399785995 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.411647797 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462704 SAMN18313138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-A04/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-A04/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.881671906 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.814682007 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.484588623 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.3897686 lineage/clade name B.1.189 host_race White BioSampleModel Pathogen.cl SRS8462705 SAMN18313237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000014-G01/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000014-G01/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.987783432 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.388584137 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.114654541 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.180704117 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462709 SAMN18313239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OR-CDC-STM-0000014-G04/2021 GISAID_virus_name hCoV-19/USA/OR-CDC-STM-0000014-G04/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Oregon lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.701002121 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.057239532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.477981567 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.551618576 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8462710 SAMN18313240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000014-G05/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000014-G05/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.880720139 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.056411743 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.024526596 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.507644653 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8462707 SAMN18313147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-0000025-B03/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-0000025-B03/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.299051285 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.254339218 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.97559166 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.113397598 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462714 SAMN18313244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/ME-CDC-STM-0000014-G11/2021 GISAID_virus_name hCoV-19/USA/ME-CDC-STM-0000014-G11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Maine lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.1927948 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.681627274 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.821447372 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.754842758 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462712 SAMN18313242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-0000014-G07/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-0000014-G07/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.676786423 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.021255493 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.787265778 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.678873062 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8462713 SAMN18313243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/HI-CDC-STM-0000014-G08/2021 GISAID_virus_name hCoV-19/USA/HI-CDC-STM-0000014-G08/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Hawaii lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.622274399 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.952125549 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.014839172 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.817951202 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462711 SAMN18313241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KS-CDC-STM-0000014-G06/2021 GISAID_virus_name hCoV-19/USA/KS-CDC-STM-0000014-G06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Kansas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.814199448 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.648551941 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.791795731 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.790157318 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462716 SAMN18313148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/RI-CDC-STM-0000025-B06/2021 GISAID_virus_name hCoV-19/USA/RI-CDC-STM-0000025-B06/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Rhode Island lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.143564224 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.578910828 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.758359909 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.73667717 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462717 SAMN18313246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-0000014-H04/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-0000014-H04/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.824281693 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.965623856 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.928060532 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.859893799 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462715 SAMN18313245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000014-H01/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000014-H01/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.601366043 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.769895554 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.407676697 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.587192535 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8462719 SAMN18313248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000014-H07/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000014-H07/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.574743271 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.768720627 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.635122299 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.676177979 lineage/clade name B.1.1.26 host_race White BioSampleModel Pathogen.cl SRS8462720 SAMN18313249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-0000014-H08/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-0000014-H08/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.391223907 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.673210144 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.52948761 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.554279327 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462718 SAMN18313247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-0000014-H06/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-0000014-H06/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.771085739 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.779109955 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.234828949 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.511487961 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8462722 SAMN18313251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-0000014-H11/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-0000014-H11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.660209656 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.873273849 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.734516144 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.72303772 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462725 SAMN18313253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-0000013-A04/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-0000013-A04/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.624141693 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.530185699 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.788068771 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.595094681 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462723 SAMN18313252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-A03/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-A03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.108325958 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.442497253 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.405359268 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1 host_race Asian BioSampleModel Pathogen.cl SRS8462721 SAMN18313250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000014-H09/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000014-H09/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.178541183 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.172628403 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.926258087 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.861646652 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8462728 SAMN18313256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-A08/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-A08/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.679977417 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.986598969 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.48541069 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.638116837 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462726 SAMN18313255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000013-A06/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000013-A06/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.117338181 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.622566223 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.421648026 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462727 SAMN18313149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-B09/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-B09/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.391624451 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.641210556 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.612255096 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.798797607 lineage/clade name B.1.241 host_race White BioSampleModel Pathogen.cl SRS8462724 SAMN18313254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-A05/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-A05/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.497053146 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.882610321 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.940879822 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.829021454 lineage/clade name B.1.361 host_race Asian BioSampleModel Pathogen.cl SRS8462730 SAMN18313258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000013-B01/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000013-B01/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.559804916 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.374826431 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.334253311 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462731 SAMN18313260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-0000013-B04/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-0000013-B04/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.910068512 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.582445145 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.303955078 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.443023682 lineage/clade name B.1.401 host_race Black or African American BioSampleModel Pathogen.cl SRS8462729 SAMN18313257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000013-A09/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000013-A09/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.097745895 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.597839355 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.299858093 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.201871872 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462735 SAMN18313263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-B08/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-B08/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.891345978 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.502950668 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.426687241 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.576835632 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8462733 SAMN18313261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-0000013-B06/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-0000013-B06/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.161323547 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.975141525 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.805988312 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.753866196 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8462734 SAMN18313262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-0000013-B07/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-0000013-B07/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.147359848 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.391843796 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.638195038 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.253606796 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462732 SAMN18313259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-0000013-B03/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-0000013-B03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.841323853 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.80078125 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.255941391 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.091859818 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8462737 SAMN18313265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-0000013-C03/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-0000013-C03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.820596695 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.124210358 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.228487015 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.377534866 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462738 SAMN18313266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000013-C04/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000013-C04/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.729290009 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.858261108 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.660076141 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.684253693 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462741 SAMN18313268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-C06/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-C06/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.661006927 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.395395279 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.206186295 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462736 SAMN18313264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000013-C01/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000013-C01/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.127643585 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.09519577 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.546728134 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.700647354 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462740 SAMN18313150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-0000025-B11/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-0000025-B11/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.725786209 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 13.772886276 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 14.980955124 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 14.739023209 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462742 SAMN18313269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000013-C07/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000013-C07/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.810569763 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.438238144 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.047620773 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.815477371 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462739 SAMN18313267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/RI-CDC-STM-0000013-C05/2021 GISAID_virus_name hCoV-19/USA/RI-CDC-STM-0000013-C05/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Rhode Island lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.507175446 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.824659348 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.728134155 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.82314682 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8462744 SAMN18313271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-C09/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-C09/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.573516846 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.935686111 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.866201401 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462745 SAMN18313273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000013-D01/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000013-D01/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.216915131 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.39563179 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.907487869 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.242898941 lineage/clade name B.1.1.4 host_race White BioSampleModel Pathogen.cl SRS8462748 SAMN18313275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IA-CDC-STM-0000013-D03/2021 GISAID_virus_name hCoV-19/USA/IA-CDC-STM-0000013-D03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Iowa lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.647472382 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.802627563 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.741521835 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.706802368 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462743 SAMN18313270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-C08/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-C08/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.773902893 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.327871323 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.44430542 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8462747 SAMN18313274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-0000013-D02/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-0000013-D02/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.474218369 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.778045654 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.220680237 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.212446213 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462749 SAMN18313276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-0000013-D04/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-0000013-D04/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.964292526 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.837230682 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.818397522 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.652856827 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462746 SAMN18313272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000013-C10/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000013-C10/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.492851257 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.566074371 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.150743484 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.38384819 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462751 SAMN18313277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-D05/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-D05/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.167350769 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.327939987 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.804792404 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.814786911 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462752 SAMN18313278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-0000013-D08/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-0000013-D08/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.68032074 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.977203369 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.810712814 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.81139946 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462750 SAMN18313151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-0000025-C05/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-0000025-C05/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.348997116 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.158246994 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.844871521 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.760147095 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462756 SAMN18313281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WA-CDC-STM-0000013-D11/2021 GISAID_virus_name hCoV-19/USA/WA-CDC-STM-0000013-D11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Washington lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.576328278 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.269981384 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.983915329 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.737344742 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462754 SAMN18313280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-0000013-D10/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-0000013-D10/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.949039459 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.70018959 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.039577484 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.835155487 lineage/clade name B host_race White BioSampleModel Pathogen.cl SRS8462755 SAMN18313282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-D12/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-D12/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.051475525 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.17795372 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.698278427 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.669101715 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8462759 SAMN18313285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-E05/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-E05/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.603546143 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.12046051 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.403072357 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.147781372 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8462753 SAMN18313279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-0000013-D09/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-0000013-D09/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.855255127 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.65174675 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.485174179 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.291135788 lineage/clade name B.1.1.119 host_race White BioSampleModel Pathogen.cl SRS8462758 SAMN18313284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-0000013-E04/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-0000013-E04/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.349428177 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.602136612 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.235841751 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.000642776 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8462760 SAMN18313286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-0000013-E06/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-0000013-E06/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.43993187 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.555466652 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.606494904 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.224346161 lineage/clade name B.1.240 host_race Unspecified BioSampleModel Pathogen.cl SRS8462757 SAMN18313283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-0000013-E02/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-0000013-E02/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 35.768386841 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.642103195 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.308193207 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.367204666 lineage/clade name B.1.243 host_race Black or African American BioSampleModel Pathogen.cl SRS8462762 SAMN18313287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-E09/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-E09/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.010536194 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.833868027 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.268367767 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.408748627 lineage/clade name B.1.1.208 host_race White BioSampleModel Pathogen.cl SRS8462763 SAMN18313288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000013-E11/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000013-E11/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.559997559 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.654426575 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.614099503 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.617099762 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462761 SAMN18313152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000025-C06/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000025-C06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.268373489 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.69146347 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.551071167 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.591688156 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462765 SAMN18313289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-E12/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-E12/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.734043121 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.804239273 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.429868698 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462766 SAMN18313291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-F03/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-F03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.024438858 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.451770782 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.121763229 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462764 SAMN18313290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OR-CDC-STM-0000013-F01/2021 GISAID_virus_name hCoV-19/USA/OR-CDC-STM-0000013-F01/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Oregon lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.500919342 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.043664932 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.747240067 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.752780914 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8462770 SAMN18313295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000013-F11/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000013-F11/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.510177612 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.235553741 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.266498566 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.840099335 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462768 SAMN18313293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000013-F09/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000013-F09/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.874261856 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.66318512 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.29917717 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.203876495 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462769 SAMN18313294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-0000013-F10/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-0000013-F10/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.738250732 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.111330032 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.401533127 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.991600037 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462767 SAMN18313292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-0000013-F06/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-0000013-F06/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.492664337 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.482040405 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.774858475 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.84535408 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462772 SAMN18313153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000025-C08/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000025-C08/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.308837891 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.364202499 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.068975449 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8462773 SAMN18313297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/DE-CDC-STM-0000013-G03/2021 GISAID_virus_name hCoV-19/USA/DE-CDC-STM-0000013-G03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Delaware lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.330026627 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.781669617 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.147090912 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.807846069 lineage/clade name B.1.1.304 host_race White BioSampleModel Pathogen.cl SRS8462771 SAMN18313296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-G01/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-G01/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.975399017 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.806440353 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.022745132 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462777 SAMN18313301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000013-H02/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000013-H02/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.002908707 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.990345001 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.676891327 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462775 SAMN18313299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000013-G07/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000013-G07/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.745054245 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.573537827 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.85461998 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.829738617 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462776 SAMN18313300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000013-G08/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000013-G08/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.890548706 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.94149971 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.512918472 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.820075989 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462774 SAMN18313298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000013-G04/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000013-G04/2021 collected_by Helix collection_date 2021-01-15 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.277582169 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.304048538 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.926851273 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.795198441 lineage/clade name B.1 host_race Latino BioSampleModel Pathogen.cl SRS8462779 SAMN18313303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-0000013-H04/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-0000013-H04/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.623016357 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.277374268 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.014514923 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.88589859 lineage/clade name B.1.1.216 host_race Black or African American BioSampleModel Pathogen.cl SRS8462780 SAMN18313304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-H05/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-H05/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.469985962 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.347179413 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.952367783 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8462783 SAMN18313155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-C10/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-C10/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.464658737 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.376174927 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.388950348 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8462778 SAMN18313302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000013-H03/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000013-H03/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.18961525 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.019603729 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.761701584 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.804584503 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462782 SAMN18313154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000025-C09/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000025-C09/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.562671661 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.050510406 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.002090454 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462784 SAMN18313156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-D02/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-D02/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.659944534 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.557901382 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.59510994 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.68217659 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8462781 SAMN18313305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000013-H06/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000013-H06/2021 collected_by Helix collection_date 2021-01-14 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.725408554 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.039222717 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.660686493 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Unspecified BioSampleModel Pathogen.cl SRS8462786 SAMN18313157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-0000025-D03/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-0000025-D03/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.802028656 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.511037827 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.571775436 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.474407196 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8462787 SAMN18313158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OR-CDC-STM-0000025-D04/2021 GISAID_virus_name hCoV-19/USA/OR-CDC-STM-0000025-D04/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Oregon lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.313150406 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.700763702 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.3014431 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.330133438 lineage/clade name B.1.1.109 host_race Unspecified BioSampleModel Pathogen.cl SRS8462785 SAMN18313139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-0000025-A05/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-0000025-A05/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.286735535 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.303922653 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.774612427 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.812705994 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462789 SAMN18313159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-0000025-D05/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-0000025-D05/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 36.61648941 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.674472809 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.293861389 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.603273392 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462790 SAMN18313161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CO-CDC-STM-0000025-D09/2021 GISAID_virus_name hCoV-19/USA/CO-CDC-STM-0000025-D09/2021 collected_by Helix collection_date 2021-01-09 geo_loc_name USA: Colorado lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.518239975 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.295785904 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.016178131 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.691822052 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462788 SAMN18313160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-D08/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-D08/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.160228729 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.908929825 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.559167862 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462792 SAMN18313164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-E03/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-E03/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.016498566 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.322561264 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.496292114 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.476192474 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462793 SAMN18313163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000025-E02/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000025-E02/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.150726318 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.781784058 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.520402908 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.425645828 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8462796 SAMN18313166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-E06/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-E06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.364032745 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.238243103 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.986579895 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.758150101 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462791 SAMN18313162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-0000025-D10/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-0000025-D10/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.41699791 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.073108673 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.969293594 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.140464783 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462795 SAMN18313140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-0000025-A06/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-0000025-A06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 34.666355133 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.659475327 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.435840607 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.599534988 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462797 SAMN18313168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-0000025-E10/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-0000025-E10/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.726856232 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.57865715 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.976024628 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.727586746 lineage/clade name B.1.3 host_race White BioSampleModel Pathogen.cl SRS8462794 SAMN18313165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-E05/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-E05/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.289810181 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.748363495 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.376077652 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462801 SAMN18313170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-F06/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-F06/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.255958557 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.424983978 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.837070465 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.760580063 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8462799 SAMN18313169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-F05/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-F05/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.894321442 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.424715042 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.17946434 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.474702835 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8462803 SAMN18313174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/ME-CDC-STM-0000025-F11/2021 GISAID_virus_name hCoV-19/USA/ME-CDC-STM-0000025-F11/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Maine lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.57276535 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.288497925 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.130270004 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.941841125 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462800 SAMN18313171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-0000025-F07/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-0000025-F07/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.17178154 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.220064163 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.822898865 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.810058594 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462798 SAMN18313167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-E09/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-E09/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.247280121 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.532701492 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.641046524 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.916448593 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462804 SAMN18313173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-0000025-F10/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-0000025-F10/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.838127136 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.635028839 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.351728439 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.294334412 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462805 SAMN18313175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000025-G01/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000025-G01/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.835309982 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.804077148 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.804906845 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462802 SAMN18313172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-0000025-F08/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-0000025-F08/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.556003571 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.750078201 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.038795471 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.878351212 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462807 SAMN18313177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000025-G05/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000025-G05/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.557443619 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.179683685 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.755983353 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.007593155 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462808 SAMN18313141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000025-A08/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000025-A08/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.527900696 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.853277206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.81444931 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.720081329 lineage/clade name B.1.409 host_race Unspecified BioSampleModel Pathogen.cl SRS8462806 SAMN18313176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-0000025-G02/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-0000025-G02/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.857402802 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.110687256 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.333562851 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.430164337 lineage/clade name B.1.1.304 host_race Unspecified BioSampleModel Pathogen.cl SRS8462810 SAMN18313178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000025-G06/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000025-G06/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.775688171 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.43816185 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.822971344 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.004217148 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462811 SAMN18313180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000025-G11/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000025-G11/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.888502121 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.942090988 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.129798889 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.816839218 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462809 SAMN18313179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000025-G07/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000025-G07/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.02901268 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.549470901 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.071203232 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.310686111 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462815 SAMN18313184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OK-CDC-STM-0000025-H06/2021 GISAID_virus_name hCoV-19/USA/OK-CDC-STM-0000025-H06/2021 collected_by Helix collection_date 2021-01-09 geo_loc_name USA: Oklahoma lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.270704269 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.062833786 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.732690811 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.795892715 lineage/clade name B.1.1.4 host_race White BioSampleModel Pathogen.cl SRS8462813 SAMN18313182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-H03/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-H03/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.792295456 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.761989594 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.777276993 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.526519775 lineage/clade name B.1.241 host_race Latino BioSampleModel Pathogen.cl SRS8462814 SAMN18313183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000025-H04/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000025-H04/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.201097488 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.431110382 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.271753311 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462812 SAMN18313181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-0000025-H01/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-0000025-H01/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.534318924 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.485589981 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.479726791 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.599451065 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462817 SAMN18313186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-0000025-H10/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-0000025-H10/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.568092346 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.423881531 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.252416611 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.350891113 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8462818 SAMN18313142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-0000025-A09/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-0000025-A09/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.32449913 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.654912949 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.812427521 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.796140671 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462816 SAMN18313185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000025-H08/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000025-H08/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.889909744 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.336244583 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.185304642 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.174753189 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462820 SAMN18313188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000014-A04/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000014-A04/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.573600769 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.791894913 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.971450806 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.861000061 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462821 SAMN18313189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-0000014-A07/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-0000014-A07/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.376686096 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.806051254 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.161109924 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.765726089 lineage/clade name B.1.78 host_race Black or African American BioSampleModel Pathogen.cl SRS8462819 SAMN18313187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-0000014-A02/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-0000014-A02/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.610565186 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.663915634 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.193193436 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.126148224 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462823 SAMN18313191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WA-CDC-STM-0000014-A10/2021 GISAID_virus_name hCoV-19/USA/WA-CDC-STM-0000014-A10/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Washington lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.052019119 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.490692139 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.226297379 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.23531723 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462824 SAMN18313192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000014-A11/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000014-A11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.39099884 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.496202469 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.658430099 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race Asian BioSampleModel Pathogen.cl SRS8462822 SAMN18313190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000014-A08/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000014-A08/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.649389267 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.434329987 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.531909943 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.223585129 lineage/clade name B.1.1.304 host_race White BioSampleModel Pathogen.cl SRS8462826 SAMN18313194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NM-CDC-STM-0000014-B01/2021 GISAID_virus_name hCoV-19/USA/NM-CDC-STM-0000014-B01/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: New Mexico lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.602010727 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.482313156 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.022218704 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.377941132 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462825 SAMN18313193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-0000014-A12/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-0000014-A12/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.447780609 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.735612869 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.008470535 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.754480362 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462829 SAMN18313143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-A10/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-A10/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.000961304 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.513998032 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.056211472 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.240411758 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8462827 SAMN18313195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-0000014-B02/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-0000014-B02/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.710683823 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.786115646 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.634080887 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.772972107 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462828 SAMN18313196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-0000014-B03/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-0000014-B03/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.766956329 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.725866318 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.780651093 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.838788986 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462831 SAMN18313198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-0000014-B06/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-0000014-B06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.700944901 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.34677124 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.636558533 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.884534836 lineage/clade name B.1.1.1 host_race Black or African American BioSampleModel Pathogen.cl SRS8462830 SAMN18313197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-0000014-B04/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-0000014-B04/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.122413635 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.808931351 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.160041809 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.046972275 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462834 SAMN18313202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-0000014-C01/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-0000014-C01/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.845811844 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.569339752 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.546045303 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.90530777 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462832 SAMN18313199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000014-B07/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000014-B07/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.963857651 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.596452713 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.348487854 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.512411118 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462833 SAMN18313200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-0000014-B08/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-0000014-B08/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.658380508 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.867938995 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.999565125 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.748472214 lineage/clade name B.1.400 host_race Unspecified BioSampleModel Pathogen.cl SRS8462838 SAMN18313205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000014-C04/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000014-C04/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.257865906 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.302377701 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.526655197 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.486551285 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462836 SAMN18313203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-0000014-C02/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-0000014-C02/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.857498169 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.71182251 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.563112259 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.488311768 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462837 SAMN18313204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-0000014-C03/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-0000014-C03/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.967523575 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.282142639 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.126783371 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.798944473 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462835 SAMN18313201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-0000014-B09/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-0000014-B09/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.409835815 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.294046402 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.33572197 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.174516678 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462840 SAMN18313207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-0000014-C06/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-0000014-C06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.263261795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.798828125 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.713912964 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.754505157 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462841 SAMN18313144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000025-A11/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000025-A11/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.261123657 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.231651306 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.907245636 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.11095047 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462839 SAMN18313206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000014-C05/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000014-C05/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.564023972 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.825138092 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.224061966 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.768396378 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8462843 SAMN18313209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WI-CDC-STM-0000014-C11/2021 GISAID_virus_name hCoV-19/USA/WI-CDC-STM-0000014-C11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Wisconsin lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.518516541 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.936172485 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.078083038 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.604831696 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462844 SAMN18313210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000014-C12/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000014-C12/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.194917679 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.41245079 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.023820877 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.654729843 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462842 SAMN18313208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000014-C10/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000014-C10/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.081758499 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.870969772 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.294975281 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.38249588 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8462846 SAMN18313212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-0000014-D02/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-0000014-D02/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.328550339 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.7747612 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.547290802 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.795578003 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462847 SAMN18313213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000014-D03/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000014-D03/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.550228119 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.610584259 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.516815186 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.477571487 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462845 SAMN18313211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/VA-CDC-STM-0000014-D01/2021 GISAID_virus_name hCoV-19/USA/VA-CDC-STM-0000014-D01/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.633560181 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.529685974 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.396854401 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.415348053 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462849 SAMN18313215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-0000014-D05/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-0000014-D05/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.622350693 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.670736313 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.368238449 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.359359741 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8462852 SAMN18313217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000014-D07/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000014-D07/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.26410675 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.594688416 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.826738358 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.767087936 lineage/clade name B.1.404 host_race Latino BioSampleModel Pathogen.cl SRS8462850 SAMN18313145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000025-B01/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000025-B01/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.745548248 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.78811264 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.912912369 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.862371445 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8462854 SAMN18313218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AR-CDC-STM-0000014-D08/2021 GISAID_virus_name hCoV-19/USA/AR-CDC-STM-0000014-D08/2021 collected_by Helix collection_date 2021-01-09 geo_loc_name USA: Arkansas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.265666962 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.685440063 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.026285172 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.710199356 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462848 SAMN18313214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-0000014-D04/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-0000014-D04/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.509429932 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.770967484 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.833747864 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.65845871 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462853 SAMN18313219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-0000014-D10/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-0000014-D10/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.733160019 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.478878021 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.277805328 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.249538422 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462855 SAMN18313220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000014-D11/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000014-D11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.532743454 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.23831749 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.855611801 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.866205215 lineage/clade name B.1.369 host_race Unspecified BioSampleModel Pathogen.cl SRS8462858 SAMN18313222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000014-E01/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000014-E01/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.588655472 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.157297134 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.002662659 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462851 SAMN18313216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-0000014-D06/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-0000014-D06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.048892975 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.052783966 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.5620327 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.886331558 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462857 SAMN18313223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-0000014-E02/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-0000014-E02/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.985643387 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.718160629 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.490732193 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.244337082 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462859 SAMN18313224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-0000014-E03/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-0000014-E03/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.100906372 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.435943604 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.079450607 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.808765411 lineage/clade name B.1 host_race Asian BioSampleModel Pathogen.cl SRS8462856 SAMN18313221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-0000014-D12/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-0000014-D12/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.51017189 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.807790756 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.957424164 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.006795883 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462861 SAMN18313226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-0000014-E06/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-0000014-E06/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.865571976 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.532381058 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.568105698 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.164390564 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8462862 SAMN18313146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-0000025-B02/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-0000025-B02/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.134166718 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.810283661 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.837726593 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.71547699 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8462860 SAMN18313225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000014-E05/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000014-E05/2021 collected_by Helix collection_date 2021-01-10 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.202838898 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.798534393 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.550735474 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.639022827 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462864 SAMN18313228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-0000014-E09/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-0000014-E09/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.324951172 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.07506752 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.76360321 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.73242569 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8462865 SAMN18313229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000014-F01/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000014-F01/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.008766174 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.816007614 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.726219177 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.44424057 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8462863 SAMN18313227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000014-E07/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000014-E07/2021 collected_by Helix collection_date 2021-01-13 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.786060333 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.215806961 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.753189087 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.901496887 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8462867 SAMN18313231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NH-CDC-STM-0000014-F05/2021 GISAID_virus_name hCoV-19/USA/NH-CDC-STM-0000014-F05/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: New Hampshire lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.982656479 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.570568085 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.637052536 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.507062912 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462868 SAMN18313232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-0000014-F06/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-0000014-F06/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.034498215 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.789575577 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.468456268 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.712518692 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8462866 SAMN18313230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MO-CDC-STM-0000014-F04/2021 GISAID_virus_name hCoV-19/USA/MO-CDC-STM-0000014-F04/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Missouri lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.288667679 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.314918518 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.273923874 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.500150681 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8462870 SAMN18313234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-0000014-F09/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-0000014-F09/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.427881241 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.439474106 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.521003723 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462871 SAMN18313235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-0000014-F11/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-0000014-F11/2021 collected_by Helix collection_date 2021-01-12 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.279537201 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.544225693 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.294984818 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8462869 SAMN18313233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-0000014-F08/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-0000014-F08/2021 collected_by Helix collection_date 2021-01-11 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.113986969 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.770877838 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.528404236 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.734167099 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8462872 SAMN18313236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-0000014-F12/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-0000014-F12/2021 collected_by Helix collection_date 2021-01-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.41843605 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.096128464 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.691106796 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.638320923 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl