SRX10375193 DC4 RNA-seq of RNA extracted from distal colon stool samples of mus musculus mono-colonized with E.coli Nissle: Control mouse 4 (DC4) SRP303714 PRJNA695566 RNA was extracted from stool samples with RNeasy PowerMicrobiome kit (Qiagen) following manufacturer's protocol, including on-column DNAse I treatement. Purified RNA was depleted of bacterial ribosomal RNA, and converted into barcoded cDNA before sequencing. rRNA depletion, library preparation and sequencing service provided by The Centre for Applied Genomics (TCAG), Toronto, Canada (http://www.tcag.ca/). SRS8489799 EcN_control4_DC4 DC4 RNA-Seq TRANSCRIPTOMIC RANDOM Illumina HiSeq 2500