SRS8490355 SAMN18351618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007439/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007439/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.394044876 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.668682098 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.556463242 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.671012878 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490356 SAMN18351619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007447/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007447/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.076061249 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.120586395 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.834278107 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.452314377 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490357 SAMN18351620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007455/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007455/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.285524368 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.627731323 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.481639862 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.871707916 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490358 SAMN18351621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007463/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007463/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.194253922 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.101604462 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.798791885 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.731433868 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490359 SAMN18351622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007471/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007471/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.817661285 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.451343536 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.20655632 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.82884407 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490360 SAMN18351623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007479/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007479/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.527826309 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.175683975 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.43806076 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.360713959 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490361 SAMN18351624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007487/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007487/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.940254211 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.749979019 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.415857315 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.048410416 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490362 SAMN18351625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007408/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007408/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.400465012 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.392250061 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.023353577 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.435029984 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490363 SAMN18351032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000008889/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000008889/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.779636383 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.308443069 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.178731918 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.762905121 lineage/clade name B.1.441 host_race White BioSampleModel Pathogen.cl SRS8490364 SAMN18351086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008895/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008895/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.702487946 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.251369476 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.744785309 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.401023865 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8490365 SAMN18351626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007416/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007416/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.947368622 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.46987915 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.983833313 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.508491516 lineage/clade name B.1.433 host_race Black or African American BioSampleModel Pathogen.cl SRS8490366 SAMN18351627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007424/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007424/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.793758392 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.757202148 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.815628052 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.059347153 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490367 SAMN18351628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007432/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007432/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.768852234 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.800569534 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.270093918 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.621421814 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490368 SAMN18351629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007440/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007440/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.627120972 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.743474007 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.72180748 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.77148819 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490369 SAMN18351630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007448/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007448/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.577230453 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.796443939 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.815969467 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.559108734 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490370 SAMN18351631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007456/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007456/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.183868408 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.935695648 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.501750946 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.371751785 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490371 SAMN18351632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007464/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007464/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.82412529 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.58864975 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.719438553 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.198274612 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490372 SAMN18351633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007472/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007472/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.611450195 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.991334915 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.484121323 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.163728714 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490373 SAMN18351634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007480/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007480/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.756292343 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.623474121 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.229946136 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.251440048 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490374 SAMN18351635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007488/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007488/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.514627457 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.050590515 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.564147949 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.080860138 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490375 SAMN18351087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000008808/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000008808/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.785953522 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.012466431 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.548332214 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.906393051 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490376 SAMN18351636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007549/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007549/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.575460434 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.043466568 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.628328323 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.22063446 lineage/clade name B.1.1.85 host_race White BioSampleModel Pathogen.cl SRS8490377 SAMN18351637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007557/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007557/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.537942886 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.778223038 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.933469772 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.724731445 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490378 SAMN18351638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007565/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007565/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.142009735 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.801429749 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.161643982 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.872081757 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8490379 SAMN18351639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007573/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007573/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.996063232 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.672420502 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.35811615 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.797178268 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490380 SAMN18351640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000007581/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-000007581/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.63420105 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.986404419 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.651035309 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.675134659 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490381 SAMN18351641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007589/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007589/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.121681213 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.256921768 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.614532471 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.468202591 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490382 SAMN18351642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007550/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007550/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.071762085 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.299613953 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.672903061 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.460159302 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490383 SAMN18351643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007574/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007574/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.834159851 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.97652626 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.741691589 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.295101166 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490384 SAMN18351644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000007582/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000007582/2021 collected_by Helix collection_date 2021-01-28 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.764635086 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.79577446 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.761455536 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.115476608 lineage/clade name B.1.1.207 host_race White BioSampleModel Pathogen.cl SRS8490385 SAMN18351645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007551/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007551/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.607187271 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.181676865 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.385040283 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.815441132 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490386 SAMN18351088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008824/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008824/2021 collected_by Helix collection_date 2021-01-31 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.348617554 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.557588577 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.579551697 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.111408234 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490387 SAMN18351301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010404/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010404/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.13225174 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.706279755 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.29655838 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.888975143 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490388 SAMN18351302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010412/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010412/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.325004578 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.41627121 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.309041977 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.508398056 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490389 SAMN18351303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010420/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010420/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.769826889 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.613674164 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.996263504 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.629405975 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490390 SAMN18351304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010428/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010428/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.654037476 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.556587219 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.986877441 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.77753067 lineage/clade name B.1 host_race Asian BioSampleModel Pathogen.cl SRS8490391 SAMN18351305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010436/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010436/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.289691925 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.493127823 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.380775452 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.028930664 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490392 SAMN18351054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008812/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008812/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.833927155 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.47944355 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.287525177 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.928092957 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490393 SAMN18351306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000010444/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000010444/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.326173782 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.40735817 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.447325706 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.395152092 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490394 SAMN18351307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010452/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010452/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.892917633 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.430513382 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.004716873 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.635232925 lineage/clade name B.1.1.222 host_race Black or African American BioSampleModel Pathogen.cl SRS8490395 SAMN18351308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010460/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010460/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.388742447 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.08278656 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.590120316 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.321710587 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490396 SAMN18351309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000010468/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000010468/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.665353775 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.799962997 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.397203445 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.304298401 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490397 SAMN18351310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010484/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010484/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.71846199 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.249860764 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.624731064 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.511766434 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490398 SAMN18351311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010492/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010492/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.502733231 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.823097229 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.283634186 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.323368073 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490399 SAMN18351312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010405/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010405/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.294008255 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.718412399 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.228061676 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.054138184 lineage/clade name B.1.2 host_race American Indian or Alaska Native BioSampleModel Pathogen.cl SRS8490400 SAMN18351313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010413/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010413/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.995868683 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.061571121 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.038759232 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.895463943 lineage/clade name B.1.404 host_race Black or African American BioSampleModel Pathogen.cl SRS8490401 SAMN18351314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010421/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010421/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.358451843 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.526758194 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.917642593 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.784852982 lineage/clade name B.1.1.244 host_race Latino BioSampleModel Pathogen.cl SRS8490402 SAMN18351055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008828/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008828/2021 collected_by Helix collection_date 2021-01-31 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.268095016 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.224533081 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.938688278 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.588565826 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490403 SAMN18351315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010429/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010429/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.16566658 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.236885071 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.06098938 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.419319153 lineage/clade name B.1.36 host_race Asian BioSampleModel Pathogen.cl SRS8490404 SAMN18351316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000010453/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000010453/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.571817398 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.744352341 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.001502991 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.2701931 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490405 SAMN18351317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010461/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010461/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.21154213 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.759773254 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.922266006 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.018665314 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490406 SAMN18351318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010485/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010485/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.603313446 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.118722916 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.470710754 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.235458374 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490407 SAMN18351319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010493/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010493/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.345554352 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.70621109 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.923881531 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.816768646 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490408 SAMN18351320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010406/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010406/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.897634506 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.965555191 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.612236023 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.34475708 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490409 SAMN18351321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010414/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010414/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.831783295 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.449066162 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.766370773 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.297025681 lineage/clade name B.1.413 host_race Asian BioSampleModel Pathogen.cl SRS8490410 SAMN18351322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010422/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010422/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.872995377 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.607639313 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.94042778 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.773599625 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8490411 SAMN18351323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010430/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010430/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.582696915 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.322622299 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.195991516 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.916715622 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8490412 SAMN18351324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010438/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010438/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.158027649 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.28997612 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.974773407 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.395875931 lineage/clade name B.1.1.222 host_race Black or African American BioSampleModel Pathogen.cl SRS8490413 SAMN18351325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010446/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010446/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.868284225 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.296981812 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.887382507 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.45680809 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490414 SAMN18351029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008849/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008849/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.508382797 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.928836823 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.565969467 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.583330154 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8490415 SAMN18351326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010454/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010454/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 34.007289886 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.026248932 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.576898575 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.35464859 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490416 SAMN18351056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000008844/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000008844/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.613904953 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.382537842 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.83067131 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.74066925 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490417 SAMN18351327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010462/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010462/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.827201843 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.302883148 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.258586884 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.568277359 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490418 SAMN18351328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010470/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010470/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.910690308 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.154542923 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.986047745 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.738739014 lineage/clade name B.1.369 host_race White BioSampleModel Pathogen.cl SRS8490419 SAMN18351646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007559/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007559/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.569223404 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.962234497 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.601186752 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.299295425 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490420 SAMN18351647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007575/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007575/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.13964653 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.552310944 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.040410995 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.772918701 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490421 SAMN18351648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007591/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007591/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.781562805 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.670539856 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.341766357 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.838552475 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490422 SAMN18351649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007552/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007552/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.418968201 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.028182983 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.604782104 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.218608856 lineage/clade name B.1.289 host_race Asian BioSampleModel Pathogen.cl SRS8490423 SAMN18351651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000007568/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-000007568/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.815198898 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.358201981 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.80443573 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.585599899 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490424 SAMN18351650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007560/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007560/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.802156448 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.108774185 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.910518646 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.255241394 lineage/clade name P.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490425 SAMN18351652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007576/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007576/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.440984726 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.323465347 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.999816895 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.790319443 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490426 SAMN18351653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007553/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007553/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.665260315 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.745073318 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.785013199 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.74779892 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490427 SAMN18351655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007569/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007569/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.743009567 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.906576157 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.858665466 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.780309677 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8490428 SAMN18351654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007561/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007561/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.659582138 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.539558411 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.816251755 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.709869385 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490429 SAMN18351089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008832/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008832/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.105823517 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.654855728 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.77173233 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.631351471 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490430 SAMN18351656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007577/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007577/2021 collected_by Helix collection_date 2021-01-28 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.89414978 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.926082611 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.734939575 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.495820999 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490431 SAMN18351657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000007585/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000007585/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.247179031 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.713148117 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.150072098 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.752428055 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490432 SAMN18351658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007546/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007546/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.00110054 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.761974335 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.099485397 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.841890335 lineage/clade name B.1.232 host_race Unspecified BioSampleModel Pathogen.cl SRS8490433 SAMN18351659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007554/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007554/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.363523483 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.720842361 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.540647507 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.401201248 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490434 SAMN18351660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007562/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007562/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.723157883 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.344182968 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.417974472 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.864530563 lineage/clade name B.1.400 host_race White BioSampleModel Pathogen.cl SRS8490435 SAMN18351661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007570/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007570/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.499313354 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.059642792 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.820430756 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.373491287 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490436 SAMN18351662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000007578/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000007578/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.878067017 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.563970566 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.858261108 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.091592789 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490437 SAMN18351663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007586/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007586/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.290691376 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.487195969 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.776323318 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.834695816 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490438 SAMN18351664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007547/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007547/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.924360275 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.342685699 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.835391998 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.175262451 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490439 SAMN18351665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007555/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007555/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.997657776 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.541614532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.427804947 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.769620895 lineage/clade name B.1.110.3 host_race White BioSampleModel Pathogen.cl SRS8490440 SAMN18351090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008840/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008840/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.733615875 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.907003403 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.923509598 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.099906921 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8490441 SAMN18351666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007563/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007563/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.509656906 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.68497467 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.208084106 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.416065216 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490442 SAMN18351667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007571/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007571/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.151855469 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.290420532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.687828064 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.645433426 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490443 SAMN18351668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007579/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007579/2021 collected_by Helix collection_date 2021-01-28 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.223516464 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.159086227 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.170888901 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.096155167 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490444 SAMN18351669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007587/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007587/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.537872314 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.540016174 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.183301926 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.840190887 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490445 SAMN18351670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007548/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007548/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.377708435 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.21002388 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.474529266 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.278232574 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490446 SAMN18351672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007564/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007564/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.301963806 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.090898514 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.794115067 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.709482193 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490447 SAMN18351671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007556/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007556/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.063772202 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.196401596 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.463871002 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.315450668 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490448 SAMN18351673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000007572/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-000007572/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.573535919 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.981819153 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.695926666 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.793764114 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490449 SAMN18351674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000007580/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000007580/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.499893188 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.413986206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.682134628 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.563173294 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490450 SAMN18351675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007588/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007588/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.343259811 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.522871017 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.054826736 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.320737839 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490451 SAMN18351091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008856/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008856/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.824216843 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.699272156 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.64257431 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.762472153 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490452 SAMN18351676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007592/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007592/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.750099182 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.22019577 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.793758392 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.457836151 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490453 SAMN18351677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007593/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007593/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.54891777 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.794542313 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.285163879 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.158245087 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490454 SAMN18351679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007609/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007609/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.499792099 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.064641953 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.992631912 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.032411575 lineage/clade name B.1.110.3 host_race White BioSampleModel Pathogen.cl SRS8490455 SAMN18351678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007595/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007595/2021 collected_by Helix collection_date 2021-01-28 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.787107468 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.840660095 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.316711426 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.821960449 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490456 SAMN18351680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007617/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007617/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.744430542 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.138034821 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.677625656 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.355300903 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490457 SAMN18351681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007625/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007625/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.282842636 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.231302261 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.003580093 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.017963409 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490458 SAMN18351682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007641/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007641/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.437759399 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.789701462 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.292312622 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.751527786 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490459 SAMN18351683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007602/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007602/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.255582809 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.227228165 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.947784424 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.368122101 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490460 SAMN18351684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007618/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007618/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.831922531 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.644809723 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.057498932 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.848426819 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490461 SAMN18351685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000007626/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000007626/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.52658844 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.777111053 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.918411255 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.78263092 lineage/clade name B.1 host_race Black or African American BioSampleModel Pathogen.cl SRS8490462 SAMN18351092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008872/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008872/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.605279922 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.333652496 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.396068573 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.903490067 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490463 SAMN18351686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007634/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007634/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.821422577 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.455446243 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.726297379 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.433229446 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490464 SAMN18351687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007642/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007642/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.988786697 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.941326141 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.485473633 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.659788132 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490465 SAMN18351688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007603/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007603/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 20.392154694 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.228378296 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.34545517 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.074661255 lineage/clade name B.1.189 host_race White BioSampleModel Pathogen.cl SRS8490466 SAMN18351689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007627/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007627/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.506523132 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.779218674 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.048563004 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.719734192 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490467 SAMN18351690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000007612/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000007612/2021 collected_by Helix collection_date 2021-01-28 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.696947098 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.899881363 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.123209 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.780414581 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490468 SAMN18351691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007620/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007620/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.78191185 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.65262413 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.188177109 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.275270462 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490469 SAMN18351692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007636/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007636/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.536470413 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.0239048 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.09094429 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.779649734 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490470 SAMN18351693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007605/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007605/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.832565308 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.060159683 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.715755463 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.348331451 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490471 SAMN18351695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000007621/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000007621/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.562858582 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.53689003 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.909570694 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.632604599 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490472 SAMN18351694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007613/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007613/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.136144638 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.943155289 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.897613525 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.227720261 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490473 SAMN18351093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008880/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008880/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.665103912 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.042598724 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.392700195 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.563346863 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490474 SAMN18351696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007606/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007606/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.336874008 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.791822433 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.351961136 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.229486465 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490475 SAMN18351698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000007622/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000007622/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.483943939 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.952306747 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.387113571 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.21752739 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490476 SAMN18351697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007614/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007614/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.002559662 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.090288162 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.498949051 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.288511276 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490477 SAMN18351699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000007630/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000007630/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.535598755 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.356472015 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.826395035 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.548692703 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490478 SAMN18351700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007638/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007638/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.553390503 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.219158173 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.613651276 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.492671967 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490479 SAMN18351701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007607/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007607/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.661100388 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.054649353 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.66699791 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.340755463 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490480 SAMN18351702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007623/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007623/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.329563141 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.291097641 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.008703232 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.766921997 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490481 SAMN18351703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000007631/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000007631/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.336606979 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.332969666 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.118812561 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.007808685 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490482 SAMN18351704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007639/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007639/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.668966293 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.142963409 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.174272537 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.088087082 lineage/clade name B.1.1.1 host_race White BioSampleModel Pathogen.cl SRS8490483 SAMN18351329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010486/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010486/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.339677811 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.989006042 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.582931519 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.853334427 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490484 SAMN18351330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010494/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010494/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.913488388 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.671062469 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.505765915 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.785785675 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490485 SAMN18351331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010407/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010407/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.670484543 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.325920105 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.34677887 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.816049576 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490486 SAMN18351332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010415/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010415/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.62720108 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.338899612 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.521806717 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.647598267 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490487 SAMN18351333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010423/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010423/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.827472687 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.36324501 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.763063431 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.320755005 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490488 SAMN18351334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010447/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010447/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.585180283 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.503194809 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.179229736 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.917362213 lineage/clade name B.1.311 host_race Black or African American BioSampleModel Pathogen.cl SRS8490489 SAMN18351335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000010455/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000010455/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.589082718 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.994812012 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.644500732 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.837299347 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490490 SAMN18351057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WI-CDC-STM-000008868/2021 GISAID_virus_name hCoV-19/USA/WI-CDC-STM-000008868/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Wisconsin lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.597042084 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.826971054 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.525934219 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.734897614 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490491 SAMN18351336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010463/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010463/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.435190201 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.537689209 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.775278091 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.964885712 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490492 SAMN18351337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000010471/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000010471/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.291139603 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.815460205 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.798324585 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.512748718 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490493 SAMN18351338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010479/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010479/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.12509346 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.770204544 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.62244606 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.383628845 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490494 SAMN18351339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010487/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010487/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.656705856 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.860012054 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.188968658 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.593873978 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490495 SAMN18351341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010416/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010416/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.801639557 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.53666687 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.815593719 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.433240891 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490496 SAMN18351340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010495/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010495/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.348434448 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.081104279 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.802362442 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.468095779 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490497 SAMN18351342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010432/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010432/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.17345047 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.635017395 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.88904953 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.699069977 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490498 SAMN18351343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010440/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010440/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.505535126 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.047206879 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.850610733 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.294725418 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490499 SAMN18351344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000010448/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000010448/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.149881363 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.920434952 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.019447327 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.912817001 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490500 SAMN18351345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010456/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010456/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.303577423 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.90791893 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.223316193 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.752939224 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490501 SAMN18351058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008876/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008876/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.188522339 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.157129288 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.733959198 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.228282928 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490502 SAMN18351346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010480/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010480/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.957921982 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.032327652 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.866424561 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.478250504 lineage/clade name B.1.1.1 host_race Black or African American BioSampleModel Pathogen.cl SRS8490503 SAMN18351347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010488/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010488/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.581998825 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.070156097 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.711048126 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.924200058 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490504 SAMN18351349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010517/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010517/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.518981934 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.714658737 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.103614807 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.918333054 lineage/clade name B.1 host_race Latino BioSampleModel Pathogen.cl SRS8490505 SAMN18351348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010509/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010509/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.761955261 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.106924057 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.335758209 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.490289688 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490506 SAMN18351350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010525/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010525/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.813312531 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.993070602 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.700321198 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.512651443 lineage/clade name B.1.1 host_race Latino BioSampleModel Pathogen.cl SRS8490507 SAMN18351351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010533/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010533/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.617866516 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.213747025 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.705717087 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.473249435 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8490508 SAMN18351352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010541/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010541/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 80 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.916713715 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.656032562 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.758275986 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.622484207 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490509 SAMN18351353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010557/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010557/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.05790329 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.185482025 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.060569763 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.174133301 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490510 SAMN18351354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010573/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010573/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.638254166 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.720344543 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.501832962 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.974111557 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490511 SAMN18351355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010581/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010581/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.595785141 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.972812653 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.545619965 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.503831863 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490512 SAMN18351059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000008884/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000008884/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.487148285 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.266090393 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.858270645 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.326828003 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490513 SAMN18351356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000010589/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000010589/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.264303207 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.936243057 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.04466629 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.782548904 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490514 SAMN18351357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010510/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010510/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.205726624 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.355350494 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.089330673 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.690736771 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490515 SAMN18351094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000008888/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000008888/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.774015427 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.296796799 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.935855865 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.571659088 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490516 SAMN18351705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007608/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007608/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.023540497 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.778839111 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.238292694 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.198223114 lineage/clade name B.1.433 host_race White BioSampleModel Pathogen.cl SRS8490517 SAMN18351706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000007616/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000007616/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.879262924 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.302612305 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.440517426 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.867454529 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490518 SAMN18351707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007624/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007624/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.262191772 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.923641205 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.965332031 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.713352203 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8490519 SAMN18351708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010609/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010609/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.387990952 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.664041519 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.715057373 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.518005371 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490520 SAMN18351709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010617/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010617/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.388660431 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.914871216 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.246164322 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.700408936 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490521 SAMN18351711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010641/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010641/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.743217468 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.294244766 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.233818054 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.466861725 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490522 SAMN18351710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010625/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010625/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.851734161 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.572925568 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.362672806 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.810001373 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8490523 SAMN18351712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000010649/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-000010649/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.631799698 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.794063568 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.197628021 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.616159439 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490524 SAMN18351713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010657/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010657/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.436956406 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.440729141 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.865942001 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.742341995 lineage/clade name B.1.362 host_race Unspecified BioSampleModel Pathogen.cl SRS8490525 SAMN18351715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010673/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010673/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.405538559 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.271434784 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.08631134 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.102823257 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490526 SAMN18351714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010665/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010665/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.581981659 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.978517532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.755405426 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.589237213 lineage/clade name B.1.1.29 host_race Black or African American BioSampleModel Pathogen.cl SRS8490527 SAMN18351095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008917/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008917/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.956691742 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.968765259 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.684686661 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.741436005 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490528 SAMN18351716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010689/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010689/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.543491364 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.781017303 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.08237648 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.733402252 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490529 SAMN18351717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010618/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010618/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.191164017 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.972555161 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.923433304 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.363380432 lineage/clade name B.1.1.1 host_race White BioSampleModel Pathogen.cl SRS8490530 SAMN18351718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010626/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010626/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.561531067 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.466478348 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.653102875 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.222866058 lineage/clade name B.1.427 host_race Asian BioSampleModel Pathogen.cl SRS8490531 SAMN18351719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010650/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010650/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.491662979 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.161247253 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.867938995 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.878469467 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490532 SAMN18351720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010666/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010666/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.812986374 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.416391373 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.932317734 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.76950264 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490533 SAMN18351722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010690/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010690/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.341192245 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.070236206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.479587555 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.886827469 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490534 SAMN18351721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010674/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010674/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.890211105 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.870779037 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.59677124 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.551372528 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490535 SAMN18351723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010603/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010603/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.224332809 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.781064987 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.427778244 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.135648727 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490536 SAMN18351724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010611/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010611/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.351268768 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.669294357 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.070928574 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.615871429 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8490537 SAMN18351725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010619/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010619/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.838510513 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.750612259 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.778863907 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.042751312 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490538 SAMN18351033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008818/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008818/2021 collected_by Helix collection_date 2021-01-31 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.851182938 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.572635651 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.139076233 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.834070206 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490539 SAMN18351096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000008925/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000008925/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.619132996 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.374698639 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.791154861 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.442598343 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490540 SAMN18351726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010627/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010627/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.69301796 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.395238876 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.151403427 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.248537064 lineage/clade name B.1.427 host_race Black or African American BioSampleModel Pathogen.cl SRS8490541 SAMN18351727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010643/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010643/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.230047226 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.898727417 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.500665665 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.603357315 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490542 SAMN18351729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010659/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010659/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.365215302 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.092761993 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.017572403 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.198543549 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490543 SAMN18351728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010651/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010651/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.445259094 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.80897522 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.242851257 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.846134186 lineage/clade name B.1.517 host_race Unspecified BioSampleModel Pathogen.cl SRS8490544 SAMN18351730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010691/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010691/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.919313431 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.03304863 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.382095337 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.945285797 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490545 SAMN18351731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010620/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010620/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.053697586 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.181587219 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.529998779 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.287771225 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490546 SAMN18351732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010628/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010628/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.959222794 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.732070923 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.24772644 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.849355698 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490547 SAMN18351733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010636/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010636/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.002922058 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.045269012 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.637184143 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.759485245 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490548 SAMN18351734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010660/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010660/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.194694519 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.244318008 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.351385117 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.936700821 lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8490549 SAMN18351735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010668/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010668/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.42845726 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.541685104 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.852191925 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.448411942 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490550 SAMN18351097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008933/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008933/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.731632233 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.038585663 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.513587952 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.075910568 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490551 SAMN18351736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010692/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010692/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.70391655 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.756458282 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.440757751 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.739019394 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490552 SAMN18351737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010613/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010613/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.9016819 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.650819778 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.444894791 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.253492355 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490553 SAMN18351738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010621/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010621/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.083747864 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.7811203 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.673835754 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.238075256 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490554 SAMN18351739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010653/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010653/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.993927002 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.156852722 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.051994324 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.375 host_race White BioSampleModel Pathogen.cl SRS8490555 SAMN18351740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010661/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010661/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.26534462 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.324619293 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.218725204 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.279560089 lineage/clade name B.1.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8490556 SAMN18351741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010677/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010677/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.51407814 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.328714371 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.079725266 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.016702652 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490557 SAMN18351742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010606/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010606/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.827054977 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.18904686 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.179706573 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.950679779 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490558 SAMN18351743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010614/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010614/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.289571762 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.259477615 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.868289948 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.562549591 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490559 SAMN18351744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010622/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010622/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.795133591 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.343446732 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.748462677 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.56288147 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490560 SAMN18351745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010630/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010630/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.787157059 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.751316071 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.201869965 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.672533035 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490561 SAMN18351098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000008941/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000008941/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.344284058 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.078966141 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.594791412 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.218374252 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490562 SAMN18351746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010638/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010638/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.583499908 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.449163437 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.372947693 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.769069672 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490563 SAMN18351747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010646/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010646/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.394321442 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.894418716 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.40007782 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.853984833 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490564 SAMN18351748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010654/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010654/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.374559402 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.770074844 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.462638855 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.814891815 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490565 SAMN18351749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010670/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010670/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.721305847 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.966943741 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.624795914 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.447237015 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490566 SAMN18351750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000010678/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000010678/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.648920059 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.85291481 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.339138031 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.88240242 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490567 SAMN18351751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010607/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010607/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.679254532 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.992635727 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.317310333 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.733543396 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490568 SAMN18351752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010623/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010623/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.011562347 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.067470551 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.537092209 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.108675003 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490569 SAMN18351754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010647/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010647/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.911514282 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.49168396 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.424789429 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.625389099 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490570 SAMN18351753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010639/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010639/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.373165131 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.129640579 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.036495209 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.550296783 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490571 SAMN18351099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000008981/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000008981/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.31152153 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.347959518 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.664154053 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.798364639 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490572 SAMN18351755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010663/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010663/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.650310516 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.255945206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.109464645 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.185943604 lineage/clade name B.1.111 host_race Unspecified BioSampleModel Pathogen.cl SRS8490573 SAMN18351756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NY-CDC-STM-000010671/2021 GISAID_virus_name hCoV-19/USA/NY-CDC-STM-000010671/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: New York lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.942081451 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.755926132 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.465133667 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.165409088 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490574 SAMN18351758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010687/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010687/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.580713272 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.194519043 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.42493248 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.777280807 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8490575 SAMN18351757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010679/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010679/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.574956894 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.463687897 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.920537949 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.652545929 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8490576 SAMN18351759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010608/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010608/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.004581451 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.343294144 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.504686356 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.371765137 lineage/clade name B.1.311 host_race Black or African American BioSampleModel Pathogen.cl SRS8490577 SAMN18351761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010632/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010632/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.488271713 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.024162292 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.646066666 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.784313202 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490578 SAMN18351760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010624/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010624/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.701442719 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.494913101 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.947780609 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.521373749 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490579 SAMN18351358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010518/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010518/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.969203949 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.769618988 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.076545715 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.765813828 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490580 SAMN18351359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010534/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010534/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.807302475 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.779132843 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.232133865 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.797544479 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490581 SAMN18351360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010550/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010550/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.892528534 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.363416672 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.877708435 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.802017212 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490582 SAMN18351361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010558/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010558/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.357534409 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.802846909 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.398794174 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.898674011 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490583 SAMN18351363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010590/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010590/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.199382782 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.036531448 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.518009186 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.808094025 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490584 SAMN18351362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010574/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010574/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.330879211 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.541015625 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.395809174 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.847305298 lineage/clade name B.1.216 host_race Unspecified BioSampleModel Pathogen.cl SRS8490585 SAMN18351364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010503/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010503/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.408611298 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.061500549 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.417821884 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.142959595 lineage/clade name B.1.1.231 host_race White BioSampleModel Pathogen.cl SRS8490586 SAMN18351365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010511/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010511/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.696723938 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.67299366 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.789800644 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.696969032 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490587 SAMN18351060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000008892/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000008892/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.687105179 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.782201767 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.817033768 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.356870651 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490588 SAMN18351367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010551/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010551/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.765001297 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.97337532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.821222305 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.444097519 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490589 SAMN18351368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000010559/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000010559/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.02290535 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.243843079 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.959217072 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.55150795 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490590 SAMN18351366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010535/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010535/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.053695679 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.778512955 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.250106812 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.591217041 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490591 SAMN18351369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010567/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010567/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.644683838 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.534614563 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.792196274 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.637090683 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490592 SAMN18351370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010583/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010583/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.729095459 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.534490585 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.802371979 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.576841354 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8490593 SAMN18351373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010512/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010512/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.231651306 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.33408165 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.672893524 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.571069717 lineage/clade name B.1.239 host_race White BioSampleModel Pathogen.cl SRS8490594 SAMN18351371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000010591/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000010591/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.632946014 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.524324417 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.748186111 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.508457184 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490595 SAMN18351372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010504/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010504/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.823970795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.708519936 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.402467728 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.465515137 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490596 SAMN18351375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010536/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010536/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.916893005 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.950489044 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.484132767 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.268224716 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490597 SAMN18351061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000008805/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000008805/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.718160629 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.806793213 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.608657837 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.13924408 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490598 SAMN18351374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010520/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010520/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.445180893 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.90099144 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.122344971 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.775625229 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8490599 SAMN18351376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010544/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010544/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.237833023 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.95025444 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.216617584 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.789575577 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490600 SAMN18351377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010552/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010552/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.168832779 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.730903625 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.29927063 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.878927231 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490601 SAMN18351378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000010560/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000010560/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.403297424 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.948287964 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.949911118 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.161653519 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490602 SAMN18351381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010584/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010584/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.237262726 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.711948395 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.09654808 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.871904373 lineage/clade name B.1.1.85 host_race White BioSampleModel Pathogen.cl SRS8490603 SAMN18351379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000010568/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000010568/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.359052658 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.467126846 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.752252579 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.484697342 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490604 SAMN18351380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010576/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010576/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.500566483 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.829423904 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.06599617 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.760757446 lineage/clade name B.1.243 host_race Latino BioSampleModel Pathogen.cl SRS8490605 SAMN18351382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010592/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010592/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.225164413 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.855998993 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.31656456 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.084117889 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490606 SAMN18351384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010513/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010513/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.383190155 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.338466644 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.688890457 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.59113884 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490607 SAMN18351383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010505/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010505/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.009708405 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.231674194 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.848752975 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.146026611 lineage/clade name B.1.2 host_race American Indian or Alaska Native BioSampleModel Pathogen.cl SRS8490608 SAMN18351385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010537/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010537/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.677165985 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.792930603 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.23409462 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.743518829 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490609 SAMN18351062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008813/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008813/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.562393188 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.898727417 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.486207962 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.768384933 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490610 SAMN18351386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010545/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010545/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.035196304 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.44578743 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.388578415 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.888286591 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490611 SAMN18351762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010648/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010648/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.889175415 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.818195343 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.072889328 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.796312332 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490612 SAMN18351764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010680/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010680/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.305698395 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.69370079 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.083492279 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.943315506 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490613 SAMN18351763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010672/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010672/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.401693344 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.899795532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.30059433 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.911371231 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490614 SAMN18351766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011725/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011725/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.36879158 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.059204102 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.918430328 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.751329422 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490615 SAMN18351100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008934/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008934/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.251272202 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.627923965 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.60115242 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.739053726 lineage/clade name B.1.241 host_race White BioSampleModel Pathogen.cl SRS8490616 SAMN18351765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011717/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011717/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.09034729 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.008037567 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.60474968 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.699256897 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490617 SAMN18351767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011733/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011733/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.628583908 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.765649796 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.439712524 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.224367142 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490618 SAMN18351768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011741/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011741/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.101131439 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.535764694 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.082458496 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.731269836 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490619 SAMN18351769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011749/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011749/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.767343521 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.804668427 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.362630844 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.371202469 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490620 SAMN18351770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011757/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011757/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.389772415 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.457309723 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.748369217 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.259304047 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490621 SAMN18351771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011781/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011781/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.806255341 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.387176514 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.759477615 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.004056931 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490622 SAMN18351772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011702/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011702/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.928611755 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.270767212 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.14232254 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.7784729 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490623 SAMN18351773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011710/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011710/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.984802246 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.778207779 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.565048218 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.70706749 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490624 SAMN18351774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011718/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011718/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.179979324 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.26855278 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.879747391 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.770383835 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490625 SAMN18351775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000011750/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000011750/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.078050613 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.665409088 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.818893433 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.544822693 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490626 SAMN18351101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008942/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008942/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.307987213 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.11482048 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.838001251 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.643758774 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490627 SAMN18351776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011758/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011758/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.579092026 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.747602463 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.681005478 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.768362045 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490628 SAMN18351777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011766/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011766/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.887981415 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.801065445 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.786302567 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.805782318 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490629 SAMN18351779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000011703/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000011703/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.509723663 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.232551575 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.006601334 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.748506546 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490630 SAMN18351778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011782/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011782/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.233978271 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.965847015 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.791173935 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.51915741 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490631 SAMN18351780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011711/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011711/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.211395264 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.612718582 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.94278717 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.173980713 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490632 SAMN18351781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011735/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011735/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.608293533 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.09217453 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.513889313 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.701522827 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490633 SAMN18351782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011743/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011743/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.482505798 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.376832962 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.29880619 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.019804001 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490634 SAMN18351783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011775/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011775/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.519817352 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.063035965 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.244935989 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.872648239 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490635 SAMN18351784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011783/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011783/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.646795273 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.399618149 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.840867996 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.782243729 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490636 SAMN18351785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011704/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011704/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.173488617 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.705165863 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.575382233 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.431615829 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490637 SAMN18351102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008950/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008950/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.778522491 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.739068985 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.335220337 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.217144012 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490638 SAMN18351786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011712/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011712/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.949394226 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.538547516 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.341945648 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.1626091 lineage/clade name B.1.110.3 host_race White BioSampleModel Pathogen.cl SRS8490639 SAMN18351787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011736/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011736/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.169490814 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.697824478 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.71720314 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.639123917 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490640 SAMN18351788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011752/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011752/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.33263588 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.840106964 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.717912674 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.449731827 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490641 SAMN18351789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011760/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011760/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.29671669 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.794725418 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.206594467 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.285905838 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490642 SAMN18351790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011776/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011776/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.726211548 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.022357941 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.715982437 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.424215317 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490643 SAMN18351387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010553/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010553/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.735042572 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.806808472 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.530708313 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.894266129 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490644 SAMN18351388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010561/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010561/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.241437912 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.867460251 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.512886047 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.589521408 lineage/clade name B.1.110.3 host_race Black or African American BioSampleModel Pathogen.cl SRS8490645 SAMN18351389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010569/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010569/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.518728256 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.459014893 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.136009216 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.942970276 lineage/clade name B.1.243 host_race Asian BioSampleModel Pathogen.cl SRS8490646 SAMN18351391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010585/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010585/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.217847824 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.7748909 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.721693039 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.715867996 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490647 SAMN18351390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010577/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010577/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.776702881 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.090976715 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.740898132 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.318620682 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490648 SAMN18351392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010593/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010593/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.777957916 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.979488373 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.301462173 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.748218536 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490649 SAMN18351393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000010506/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000010506/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.788341522 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.352323532 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.840261459 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.48658371 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490650 SAMN18351394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010514/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010514/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.18857193 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.635057449 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.575206757 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.894060135 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490651 SAMN18351063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000008821/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000008821/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.320539474 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.802349091 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.372840881 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.96219635 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490652 SAMN18351395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010522/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010522/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.293891907 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.798131943 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.61749649 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.881698608 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490653 SAMN18351396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010530/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010530/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.387760162 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.694488525 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.325414658 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.754417419 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490654 SAMN18351397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010538/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010538/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.593734741 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.719089508 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.347118378 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.687246323 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490655 SAMN18351398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010546/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010546/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.277997971 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.301071167 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.992048264 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.984672546 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8490656 SAMN18351399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010554/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010554/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.867200851 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.356740952 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.920505524 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.434549332 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490657 SAMN18351400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000010578/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000010578/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.780672073 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.869421005 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.754375458 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.064651489 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490658 SAMN18351401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000010594/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000010594/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.050409317 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.462823868 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.759794235 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.794113159 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490659 SAMN18351403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010515/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010515/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.834590912 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.295269012 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.012939453 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.259540558 lineage/clade name B.1.1.189 host_race White BioSampleModel Pathogen.cl SRS8490660 SAMN18351404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010523/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010523/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.59205246 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.841033936 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.299674988 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.971666336 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490661 SAMN18351402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010507/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010507/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.267744064 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.035732269 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.608104706 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.794534683 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490662 SAMN18351064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008829/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008829/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.654363632 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.336662292 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.763856888 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.711654663 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490663 SAMN18351405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010531/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010531/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.184633255 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.796779633 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.521644592 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.550718307 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490664 SAMN18351406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010539/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010539/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.29609108 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.494211197 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.44131279 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.734800339 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490665 SAMN18351407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010547/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010547/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.129808426 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.768157959 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.358272552 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.820198059 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490666 SAMN18351409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010563/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010563/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.836267471 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.132102966 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.017463684 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.321271896 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490667 SAMN18351408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010555/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010555/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.880434036 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.302339554 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.805892944 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.696022034 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490668 SAMN18351410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000010571/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000010571/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.056016922 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.534399033 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.774095535 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.603815079 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8490669 SAMN18351411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010579/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010579/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.144731522 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.705907822 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.725185394 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.200521469 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490670 SAMN18351412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000010508/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000010508/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.526004791 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.707674026 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.229082108 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.924612045 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490671 SAMN18351413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000010516/2021 GISAID_virus_name hCoV-19/USA/CO-CDC-STM-000010516/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Colorado lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.585969925 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.79070282 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.574619293 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.284618378 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490672 SAMN18351414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010540/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010540/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.142522812 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.588512421 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.154844284 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.708236694 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490673 SAMN18351415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010548/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010548/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.980161667 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.007549286 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.902225494 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.439348221 lineage/clade name B.1.110.3 host_race White BioSampleModel Pathogen.cl SRS8490674 SAMN18351065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008837/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008837/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.765068054 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.031400681 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.463151932 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.854707718 lineage/clade name B.1.427 host_race Black or African American BioSampleModel Pathogen.cl SRS8490675 SAMN18351416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010556/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010556/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.591285706 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.632005692 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.827934265 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.384254456 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490676 SAMN18351417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010564/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010564/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.472106934 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.443811417 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.816350937 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.189964294 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490677 SAMN18351418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000010580/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000010580/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.891532898 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.583587646 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.800701141 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.46859169 lineage/clade name B.1.517 host_race Black or African American BioSampleModel Pathogen.cl SRS8490678 SAMN18351419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010588/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010588/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.758516312 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.430934906 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.936903 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.766326904 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490679 SAMN18351420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011009/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011009/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.970926285 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.345897675 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.985706329 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.576978683 lineage/clade name B.1.400 host_race White BioSampleModel Pathogen.cl SRS8490680 SAMN18351421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011017/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011017/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.790147781 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.931606293 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.803930283 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.845544815 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490681 SAMN18351422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011041/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011041/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.121103287 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.945466995 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.695716858 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.755031586 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490682 SAMN18351423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000011049/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000011049/2021 collected_by Helix collection_date 2021-02-01 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.274280548 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.539710999 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.971467972 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.575263977 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490683 SAMN18351424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011065/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011065/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.850679398 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.793455124 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.962743759 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.803300858 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490684 SAMN18351425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011081/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011081/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.01578331 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.062438965 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.711679459 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.790590286 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490685 SAMN18351030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008857/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008857/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.216186523 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.865383148 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.916889191 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.569545746 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490686 SAMN18351066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000008853/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000008853/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.51883316 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.807106018 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.707235336 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.045949936 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490687 SAMN18351426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011089/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011089/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.417005539 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.149261475 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.944280624 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.068178177 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490688 SAMN18351427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000011002/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000011002/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.691268921 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.110713959 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.385606766 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.220062256 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490689 SAMN18351429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000011034/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000011034/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.062314987 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.588247299 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.147916794 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.82183075 lineage/clade name B.1.1.29 host_race Unspecified BioSampleModel Pathogen.cl SRS8490690 SAMN18351428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011018/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011018/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.10187149 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.528116226 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.833498001 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.594818115 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490691 SAMN18351430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011042/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011042/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.729694366 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.848766327 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.566900253 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.804735184 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490692 SAMN18351431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011050/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011050/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.651685715 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.690732956 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.319606781 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.372438431 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490693 SAMN18351433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011082/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011082/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.809066772 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.727853775 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.104211807 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.13243103 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490694 SAMN18351432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011066/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011066/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.752384186 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.722772598 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.116046906 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.368120193 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490695 SAMN18351434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011090/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011090/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.139421463 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.624149323 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.249235153 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.321626663 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490696 SAMN18351067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008861/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008861/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.635480881 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.062862396 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.812627792 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.748714447 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490697 SAMN18351435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011003/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011003/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.200279236 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.345746994 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.657337189 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.376451492 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8490698 SAMN18351436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011011/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011011/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.393167496 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.584842682 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.173830986 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.473363876 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8490699 SAMN18351437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011019/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011019/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.043037415 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.500270844 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.059469223 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.735227585 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490700 SAMN18351438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011043/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011043/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.753177643 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.078544617 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.754682541 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.792209625 lineage/clade name B.1.400 host_race White BioSampleModel Pathogen.cl SRS8490701 SAMN18351439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000011051/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000011051/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.865991592 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.136798859 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.541145325 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.340946198 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490702 SAMN18351440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011075/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011075/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.171421051 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.000768661 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.529428482 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.144153595 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490703 SAMN18351441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011083/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011083/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.006448746 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.375059128 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.19512558 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.794120789 lineage/clade name B.1.1.251 host_race White BioSampleModel Pathogen.cl SRS8490704 SAMN18351442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011004/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011004/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.44078064 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.685394287 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.177776337 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.973665237 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490705 SAMN18351444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011020/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011020/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.546689987 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.452951431 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.814563751 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.653757095 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490706 SAMN18351443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011012/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011012/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.614547729 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.775426865 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.816192627 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.294090271 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490707 SAMN18351791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011784/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011784/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.226593018 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.832250595 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.754703522 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.384269714 lineage/clade name B.1.110.3 host_race Unspecified BioSampleModel Pathogen.cl SRS8490708 SAMN18351792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011792/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011792/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.787584305 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.532102585 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.214836121 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.952674866 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490709 SAMN18351793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011705/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011705/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.418485641 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.752958298 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.544490814 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.385034561 lineage/clade name B.1.420 host_race White BioSampleModel Pathogen.cl SRS8490710 SAMN18351794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011721/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011721/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.456445694 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.178230286 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.30616951 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.141529083 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490711 SAMN18351795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011729/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011729/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.836267471 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.047925949 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.548015594 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.523946762 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490712 SAMN18351103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008919/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008919/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.390972137 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.278110504 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.797582626 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.914493561 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490713 SAMN18351796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011737/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011737/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.42660141 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.15631485 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.779136658 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.775936127 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490714 SAMN18351797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011745/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011745/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.287500381 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.793384552 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.492456436 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.116558075 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490715 SAMN18351798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011753/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011753/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.599948883 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.53477478 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.827083588 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.449768066 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490716 SAMN18351800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011706/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011706/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.671476364 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.142532349 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.790773392 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.845731735 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490717 SAMN18351799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011785/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011785/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 35.163398743 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.74092865 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.282926559 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.296627045 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490718 SAMN18351801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011714/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011714/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.175081253 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.600561142 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.385164261 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.201087952 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490719 SAMN18351803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011738/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011738/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 20.786973953 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.712413788 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.031299591 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.632177353 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490720 SAMN18351802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011722/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011722/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.364938736 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.004056931 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.637170792 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.709964752 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490721 SAMN18351804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011746/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011746/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.068370819 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.547765732 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.15388298 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.869884491 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490722 SAMN18351806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011762/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011762/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.058757782 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.616018295 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.522317886 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.35292244 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490723 SAMN18351104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000008927/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000008927/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.758327484 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.004741669 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.124755859 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.725614548 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490724 SAMN18351805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000011754/2021 GISAID_virus_name hCoV-19/USA/DE-CDC-STM-000011754/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Delaware lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.871147156 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.650859833 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.190841675 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.888717651 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490725 SAMN18351807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011770/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011770/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.084947586 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.406888962 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.311386108 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.854652405 lineage/clade name B.1.1.189 host_race Unspecified BioSampleModel Pathogen.cl SRS8490726 SAMN18351809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011794/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011794/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.79419899 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.734172821 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.482467651 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.293079376 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490727 SAMN18351808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011786/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011786/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.745407104 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.039821625 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.635911942 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.737150192 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490728 SAMN18351810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011707/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011707/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.523635864 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.400402069 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.755729675 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.892724991 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490729 SAMN18351811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011715/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011715/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.030838013 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.568101883 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.581560135 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.782850266 lineage/clade name P.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490730 SAMN18351812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011731/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011731/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.259965897 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.144564629 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.802466393 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.83460331 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490731 SAMN18351813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011739/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011739/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.80862236 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.138399124 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.39799118 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.646001816 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490732 SAMN18351814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011747/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011747/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.624616623 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.065160751 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.321626663 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.563081741 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490733 SAMN18351815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011763/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011763/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 34.942367554 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.626220703 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.747468948 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.796758652 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490734 SAMN18351105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000008967/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000008967/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.561948776 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.764728546 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.209211349 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.914997101 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490735 SAMN18351816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011779/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011779/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.922702789 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.735960007 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.386947632 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.48677063 lineage/clade name B.1.189 host_race Unspecified BioSampleModel Pathogen.cl SRS8490736 SAMN18351817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011787/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011787/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.549003601 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.744789124 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.067598343 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.197071075 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490737 SAMN18351818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011795/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011795/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.807220459 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.211219788 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.779895782 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.839557648 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490738 SAMN18351445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011028/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011028/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.355764389 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.054203033 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.746520996 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.437892914 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490739 SAMN18351819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011708/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011708/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 20.576389313 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.840388298 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.829092026 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.513504028 lineage/clade name B.1.361 host_race American Indian or Alaska Native BioSampleModel Pathogen.cl SRS8490740 SAMN18351068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000008877/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000008877/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.053670883 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.785377502 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.813287735 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.303886414 lineage/clade name B.1.441 host_race White BioSampleModel Pathogen.cl SRS8490741 SAMN18351446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011036/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011036/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.889230728 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.791753769 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.832532883 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.776082993 lineage/clade name B.1.1.222 host_race Asian BioSampleModel Pathogen.cl SRS8490742 SAMN18351447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000011044/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000011044/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.425863266 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.615091324 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.151941299 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.810293198 lineage/clade name B.1.361 host_race Black or African American BioSampleModel Pathogen.cl SRS8490743 SAMN18351449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011060/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011060/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.802711487 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.096866608 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.488351822 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.047388077 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490744 SAMN18351448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011052/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011052/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.42341423 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.572883606 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.770278931 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.41012001 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490745 SAMN18351450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011068/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011068/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.625864029 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.105154037 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.794240952 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.662342072 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490746 SAMN18351451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011076/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011076/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.041725159 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.223657608 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.830345154 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.810724258 lineage/clade name B.1.1.304 host_race White BioSampleModel Pathogen.cl SRS8490747 SAMN18351452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011092/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011092/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.807638168 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.006055832 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.668453217 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.186216354 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490748 SAMN18351453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011005/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011005/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.097902298 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.388077736 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.061977386 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.364217758 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490749 SAMN18351455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000011021/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000011021/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.41059494 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.517238617 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.218978882 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.002111435 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490750 SAMN18351454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011013/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011013/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.065547943 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.404720306 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.906589508 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.386964798 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490751 SAMN18351069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000008893/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000008893/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.113119125 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.071707726 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.609387398 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.758267403 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490752 SAMN18351456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000011029/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-000011029/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.404060364 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.703180313 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.404613495 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 29.1609478 lineage/clade name B.1.234 host_race Unspecified BioSampleModel Pathogen.cl SRS8490753 SAMN18351457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011037/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011037/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.256217957 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.218622208 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.778650284 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.348703384 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490754 SAMN18351458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011045/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011045/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.542818069 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.158416748 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.577505112 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.044887543 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8490755 SAMN18351459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011053/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011053/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.812429428 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.808149338 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.497867584 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.839056015 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490756 SAMN18351460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011061/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011061/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.67833519 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.799547195 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.557544708 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.084817886 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490757 SAMN18351461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011069/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011069/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.259555817 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.341032028 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.062242508 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.829708099 lineage/clade name B.1.427 host_race Black or African American BioSampleModel Pathogen.cl SRS8490758 SAMN18351462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011077/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011077/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.816318512 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.285018921 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.028820038 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.158075333 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490759 SAMN18351463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011085/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011085/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.322013855 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.293931961 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.776502609 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.575500488 lineage/clade name B.1.1.192 host_race White BioSampleModel Pathogen.cl SRS8490760 SAMN18351464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000011022/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-000011022/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.080371857 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.805992126 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.738458633 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.731590271 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490761 SAMN18351465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011030/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011030/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.327724457 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.631511688 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.538822174 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.614803314 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490762 SAMN18351070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000008822/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000008822/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.795194626 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.999004364 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.7937603 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.506248474 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490763 SAMN18351466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AL-CDC-STM-000011038/2021 GISAID_virus_name hCoV-19/USA/AL-CDC-STM-000011038/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Alabama lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.750076294 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.941755295 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.696521759 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.026638031 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490764 SAMN18351467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000011046/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000011046/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.873245239 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.516651154 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.130506516 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.73043251 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490765 SAMN18351469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011078/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011078/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.917812347 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.420660019 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.746131897 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.820577621 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490766 SAMN18351468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000011062/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000011062/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.918756485 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.87169838 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.075222015 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.970914841 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490767 SAMN18351470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011086/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011086/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.320743561 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.469463348 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.142335892 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.0097332 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490768 SAMN18351471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011094/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011094/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.826389313 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.42626667 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.04158783 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.264396667 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490769 SAMN18351472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011007/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011007/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.72341156 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.116579056 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.180994034 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.821891785 lineage/clade name B.1.243 host_race Black or African American BioSampleModel Pathogen.cl SRS8490770 SAMN18351473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011015/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011015/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.648628235 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.318626404 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.210004807 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.727777481 lineage/clade name B.1.1.220 host_race White BioSampleModel Pathogen.cl SRS8490771 SAMN18351820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011724/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011724/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.671251297 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.044248581 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.383363724 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.136323929 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8490772 SAMN18351821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011740/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011740/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.70659256 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.745771408 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.501821518 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.204978943 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490773 SAMN18351822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011780/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011780/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.475759506 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.116600037 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.824659348 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.694936752 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490774 SAMN18351823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011788/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011788/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.938316345 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.298719406 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.859872818 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.770950317 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490775 SAMN18351824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011809/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011809/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.820653915 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.66258049 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.988018036 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.026765823 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490776 SAMN18351034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008826/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008826/2021 collected_by Helix collection_date 2021-02-01 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.050460815 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.008840561 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.491729736 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.268644333 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490777 SAMN18351825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011817/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011817/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.038711548 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.814594269 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.423149109 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.434171677 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490778 SAMN18351106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008991/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008991/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.779129028 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.815216064 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.782587051 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.752027512 lineage/clade name B.1.1.15 host_race White BioSampleModel Pathogen.cl SRS8490779 SAMN18351826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000011825/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000011825/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.358306885 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.827846527 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.831140518 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.823192596 lineage/clade name B.1.1.85 host_race White BioSampleModel Pathogen.cl SRS8490780 SAMN18351827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011833/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011833/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.99275589 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.315330505 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.272874832 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.339044571 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490781 SAMN18351829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011849/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011849/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.291889191 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.281736374 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.624061584 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.523597717 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8490782 SAMN18351828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011841/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011841/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.851266861 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.585336685 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.584466934 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.755126953 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8490783 SAMN18351830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011873/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011873/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.560983658 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.365613937 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.833000183 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.764909744 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490784 SAMN18351831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011889/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011889/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.792549133 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.096401215 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.200317383 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.772132874 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490785 SAMN18351832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011810/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011810/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.825628281 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.692310333 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.425830841 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.464717865 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490786 SAMN18351833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011818/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011818/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.472860336 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.819955826 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.565587997 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.446102142 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490787 SAMN18351834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011842/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011842/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.384849548 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.977340698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.512966156 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.612258911 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490788 SAMN18351835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011850/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011850/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.675634384 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.163516998 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.829938889 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.794813156 lineage/clade name B.1.429 host_race Mixed BioSampleModel Pathogen.cl SRS8490789 SAMN18351107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MS-CDC-STM-000008928/2021 GISAID_virus_name hCoV-19/USA/MS-CDC-STM-000008928/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Mississippi lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.810955048 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.785987854 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.739711761 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.255138397 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490790 SAMN18351836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011866/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011866/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.805158615 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.78329277 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.549453735 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.763076782 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490791 SAMN18351837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011874/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011874/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.778171539 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.557605743 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.504081726 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.211410522 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490792 SAMN18351839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011890/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011890/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.877906799 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.227939606 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.008960724 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.043750763 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490793 SAMN18351838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011882/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011882/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.56879425 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.056652069 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.858972549 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.741880417 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490794 SAMN18351840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011803/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011803/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.010152817 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.031785965 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.838912964 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.678138733 lineage/clade name B.1.1.208 host_race Unspecified BioSampleModel Pathogen.cl SRS8490795 SAMN18351842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011851/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011851/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.815765381 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.203208923 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.745458603 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.733882904 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490796 SAMN18351841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011811/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011811/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.503257751 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.873861313 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.436178207 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.548374176 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490797 SAMN18351843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011859/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011859/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.524520874 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.587215424 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.277608871 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.328233719 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490798 SAMN18351845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011875/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011875/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.293193817 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.28037262 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.357219696 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.151945114 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490799 SAMN18351844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011867/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011867/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.960613251 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.049163818 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.018529892 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.879955292 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490800 SAMN18351108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008936/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008936/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.879436493 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.901432037 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.517698288 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.881177902 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490801 SAMN18351846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011891/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011891/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.830921173 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.950826645 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.478834152 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.339735031 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490802 SAMN18351847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011804/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011804/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.211843491 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.478967667 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.978527069 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.095844269 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490803 SAMN18351474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000011023/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-000011023/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.613615036 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.941701889 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.732492447 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.838451385 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490804 SAMN18351475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000011031/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-000011031/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 20.928030014 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.661571503 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.525304794 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.609857559 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490805 SAMN18351071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000008830/2021 GISAID_virus_name hCoV-19/USA/RI-CDC-STM-000008830/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Rhode Island lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.508008957 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.780773163 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.443784714 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.986286163 lineage/clade name R.2 host_race White BioSampleModel Pathogen.cl SRS8490806 SAMN18351477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011047/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011047/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.318384171 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.414880753 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.573759079 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.48923111 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490807 SAMN18351476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011039/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011039/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.629907608 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.384748459 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.748035431 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.61136055 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490808 SAMN18351478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011055/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011055/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.500144958 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.621772766 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.96339035 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.206069946 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490809 SAMN18351479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011063/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011063/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.424135208 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.619920731 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.851854324 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.731809616 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490810 SAMN18351480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011079/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011079/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.720146179 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.823642731 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.612758636 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.448347092 lineage/clade name B.1.1.304 host_race White BioSampleModel Pathogen.cl SRS8490811 SAMN18351481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000011087/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000011087/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.753744125 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.142589569 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.770513535 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.594398499 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490812 SAMN18351482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011095/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011095/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.250545502 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.368829727 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.540388107 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.030750275 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490813 SAMN18351483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011008/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011008/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.704296112 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.996006012 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.798740387 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.218429565 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490814 SAMN18351484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011016/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011016/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.140625 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.140472412 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.80579567 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.60663414 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490815 SAMN18351485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011056/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011056/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.833486557 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.223657608 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.571889877 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.988380432 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490816 SAMN18351072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008838/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008838/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.711206436 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.578966141 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.625329971 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.828659058 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490817 SAMN18351487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011072/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011072/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.757026672 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.866014481 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.821651459 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.781526566 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490818 SAMN18351486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011064/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011064/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.745420456 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.415527344 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.869688034 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.689733505 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490819 SAMN18351488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000011080/2021 GISAID_virus_name hCoV-19/USA/MO-CDC-STM-000011080/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Missouri lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.254577637 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.984531403 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.518960953 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.649543762 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490820 SAMN18351490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011217/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011217/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.544631958 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.866304398 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.608837128 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.169496536 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8490821 SAMN18351491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011249/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011249/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.855096817 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.81577301 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.334918976 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.873376846 lineage/clade name A.2.4 host_race Unspecified BioSampleModel Pathogen.cl SRS8490822 SAMN18351489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011209/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011209/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.831134796 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.749103546 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.721797943 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.702960968 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490823 SAMN18351492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011257/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011257/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.815961838 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.78421402 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.549793243 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.823394775 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490824 SAMN18351495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011281/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011281/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.188430786 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.698368073 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.467639923 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.217973709 lineage/clade name B.1.240 host_race Latino BioSampleModel Pathogen.cl SRS8490825 SAMN18351494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011273/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011273/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 35.723854065 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.76257515 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.096191406 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.210262299 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490826 SAMN18351493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011265/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011265/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.719703674 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.801311493 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.504709244 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.395734787 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8490827 SAMN18351073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008846/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008846/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.148628235 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.059906006 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.943925858 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.224609375 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490828 SAMN18351496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011289/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011289/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.614652634 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.011928558 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.970434189 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.749212265 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8490829 SAMN18351497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011218/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011218/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.350927353 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.988042831 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.778594971 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.072927475 lineage/clade name B.1.189 host_race White BioSampleModel Pathogen.cl SRS8490830 SAMN18351498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011226/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011226/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.866569519 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.221252441 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.931564331 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.648017883 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490831 SAMN18351500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011242/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011242/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.020797729 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.776477814 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.987384796 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.827159882 lineage/clade name B.1.1.220 host_race White BioSampleModel Pathogen.cl SRS8490832 SAMN18351499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011234/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011234/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.473226547 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.449140549 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.85360527 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.402597427 lineage/clade name B.1.234 host_race Asian BioSampleModel Pathogen.cl SRS8490833 SAMN18351501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011258/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011258/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.772470474 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.047512054 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.355148315 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.888809204 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490834 SAMN18351502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011266/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011266/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.783575058 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.014249802 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.247913361 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.39544487 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490835 SAMN18351849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011828/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011828/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.774288177 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.85092926 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.657365799 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.366193771 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8490836 SAMN18351848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011812/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011812/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.241798401 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.542560577 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.051034927 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.859088898 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490837 SAMN18351850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011836/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011836/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.233297348 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.330129623 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.979814529 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.947669983 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490838 SAMN18351851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011852/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011852/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.926612854 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.951044083 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.485645294 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.645851135 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490839 SAMN18351852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/RI-CDC-STM-000011876/2021 GISAID_virus_name hCoV-19/USA/RI-CDC-STM-000011876/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Rhode Island lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.933244705 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.501802444 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.329927444 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.91834259 lineage/clade name B.1.433 host_race White BioSampleModel Pathogen.cl SRS8490840 SAMN18351853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011884/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011884/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.213354111 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.084197998 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.675731659 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.630666733 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490841 SAMN18351854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011892/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011892/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.751808167 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.162384033 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.836269379 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.750429153 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490842 SAMN18351855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011805/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011805/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.242998123 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.898406982 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.98428154 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.731679916 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490843 SAMN18351109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008960/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008960/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.881340027 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.548593521 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.091394424 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.665817261 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490844 SAMN18351856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000011821/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000011821/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.402936935 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.531644821 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.434799194 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.841892242 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8490845 SAMN18351857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011829/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011829/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.666872025 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.913568497 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.712085724 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.632526398 lineage/clade name B.1.409 host_race Black or African American BioSampleModel Pathogen.cl SRS8490846 SAMN18351858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011845/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011845/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.112354279 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.563554764 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.971414566 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.752773285 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490847 SAMN18351859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011853/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011853/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.223581314 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.109210968 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.239467621 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.473052979 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490848 SAMN18351860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011861/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011861/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.591461182 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.971540451 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.115636826 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.021175385 lineage/clade name B.1.1.10 host_race Unspecified BioSampleModel Pathogen.cl SRS8490849 SAMN18351861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011869/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011869/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.064220428 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.722560883 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.408452988 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.465351105 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490850 SAMN18351862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011877/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011877/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.48266983 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.723842621 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.040403366 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.369298935 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490851 SAMN18351864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011893/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011893/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.6668396 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.819833755 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.06341362 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.443496704 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490852 SAMN18351863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011885/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011885/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.80796814 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.528299332 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.824119568 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.009729385 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490853 SAMN18351865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011806/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011806/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.126037598 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.62994957 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.933187485 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.832241058 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8490854 SAMN18351110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NV-CDC-STM-000008968/2021 GISAID_virus_name hCoV-19/USA/NV-CDC-STM-000008968/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Nevada lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.251058578 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.901437759 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.329179764 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.905647278 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490855 SAMN18351867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011838/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011838/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.728927612 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.788585663 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.83707428 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.83130455 lineage/clade name B.1.404 host_race White BioSampleModel Pathogen.cl SRS8490856 SAMN18351866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011822/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011822/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 36.141124725 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.734682083 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.341754913 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.494180679 lineage/clade name B.1 host_race Black or African American BioSampleModel Pathogen.cl SRS8490857 SAMN18351868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011862/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011862/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.785614014 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.77022171 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.557823181 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.37726593 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490858 SAMN18351869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011878/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011878/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.692382813 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.253377914 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.596443176 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.45724678 lineage/clade name B.1.438 host_race White BioSampleModel Pathogen.cl SRS8490859 SAMN18351870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011886/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011886/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.561927795 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.318684578 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.788579941 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.584173203 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490860 SAMN18351871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011894/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011894/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.261873245 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.436880112 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.44430542 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.548248291 lineage/clade name B.1.1.122 host_race White BioSampleModel Pathogen.cl SRS8490861 SAMN18351872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011807/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011807/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.602508545 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.851236343 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.565608978 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.730981827 lineage/clade name B.1.369 host_race White BioSampleModel Pathogen.cl SRS8490862 SAMN18351873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011815/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011815/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.085601807 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.788291931 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.573587418 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.489805222 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490863 SAMN18351874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011831/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011831/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.81959343 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.766117096 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.668781281 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.725622177 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490864 SAMN18351875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011855/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011855/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 36.142753601 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.170114517 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.462955475 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.1951828 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490865 SAMN18351111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000008984/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000008984/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.63514328 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.487920761 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.215824127 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.935523987 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490866 SAMN18351876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011863/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011863/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.192445755 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.475627899 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.122211456 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.834447861 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490867 SAMN18351503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011282/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011282/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.11403656 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.64799881 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.133459091 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.008319855 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490868 SAMN18351504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011290/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011290/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.144533157 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.03412056 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.87597084 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490869 SAMN18351505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011203/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011203/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.859081268 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.039775848 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.827554703 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.567314148 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8490870 SAMN18351074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008862/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008862/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.480331421 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.802310944 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.60544014 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.584405899 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490871 SAMN18351506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011211/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011211/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.79593277 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.377178192 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.272331238 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.666889191 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490872 SAMN18351507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011219/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011219/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 34.000823975 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.287456512 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.50270462 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.335031509 lineage/clade name B.1.1.222 host_race Latino BioSampleModel Pathogen.cl SRS8490873 SAMN18351508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011235/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011235/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.551078796 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.55953598 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.104366302 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.753593445 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490874 SAMN18351509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011243/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011243/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.753412247 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.836948395 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.294841766 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.425401688 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490875 SAMN18351510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011251/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011251/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.009393692 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.40322876 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.2539711 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.809659958 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490876 SAMN18351511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011259/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011259/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.093208313 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.862812042 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.599916458 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.662752151 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490877 SAMN18351512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011267/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011267/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.511541367 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.759929657 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.480617523 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.209972382 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490878 SAMN18351514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011283/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011283/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.235437393 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.454490662 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.018920898 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.83823204 lineage/clade name P.2 host_race White BioSampleModel Pathogen.cl SRS8490879 SAMN18351513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011275/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011275/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.502677917 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.75318718 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.318023682 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.237220764 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490880 SAMN18351515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011291/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011291/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.60200882 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.982038498 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.66528511 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.705476761 lineage/clade name B.1.1.189 host_race Latino BioSampleModel Pathogen.cl SRS8490881 SAMN18351075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008878/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008878/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.479385376 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.257167816 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.08234787 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.890398026 lineage/clade name B.1.189 host_race Unspecified BioSampleModel Pathogen.cl SRS8490882 SAMN18351516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011212/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011212/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.672416687 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.40593338 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.263059616 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.00879097 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490883 SAMN18351517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011220/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011220/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.190513611 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.053102493 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.540834427 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.597312927 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490884 SAMN18351518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011236/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011236/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.878372192 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.468048096 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.386672974 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.840080261 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490885 SAMN18351520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011260/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011260/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.962757111 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.243919373 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.504404068 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.237451553 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490886 SAMN18351521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011268/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011268/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.840724945 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.767967224 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.309844971 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.238838196 lineage/clade name B.1.369 host_race White BioSampleModel Pathogen.cl SRS8490887 SAMN18351519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011252/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011252/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.863725662 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.948163986 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.71553421 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.066856384 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490888 SAMN18351522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011284/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011284/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.607343674 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.491514206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.639211655 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.622068405 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490889 SAMN18351523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011292/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011292/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.77299881 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.163953781 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.289619446 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.025470734 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490890 SAMN18351524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011205/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011205/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.105133057 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.006259918 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.662906647 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.713785172 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490891 SAMN18351525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011221/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011221/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.613372803 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.842990875 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.386394501 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.052707672 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490892 SAMN18351031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000008873/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000008873/2021 collected_by Helix collection_date 2021-01-31 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.725711823 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.153701782 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.421773911 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.109670639 lineage/clade name B.1 host_race Asian BioSampleModel Pathogen.cl SRS8490893 SAMN18351076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008886/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008886/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.732990265 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.469930649 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.363414764 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.979839325 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490894 SAMN18351526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011229/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011229/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.50520134 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.696540833 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.138942719 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.957735062 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490895 SAMN18351527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011237/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011237/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.667509079 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.12266922 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.608325958 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.416687012 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490896 SAMN18351528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011269/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011269/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.054372787 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.837099075 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.700014114 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.368257523 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490897 SAMN18351529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011277/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011277/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.53440094 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.81281662 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.534250259 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.377719879 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490898 SAMN18351530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011293/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011293/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.103118896 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.424634933 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.152843475 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.573904037 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490899 SAMN18351127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008963/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008963/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.373235703 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.561937332 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.238487244 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.819854736 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490900 SAMN18351128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008979/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008979/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.692106247 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.181684494 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.055435181 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.786390305 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490901 SAMN18351130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OR-CDC-STM-000008908/2021 GISAID_virus_name hCoV-19/USA/OR-CDC-STM-000008908/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Oregon lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.758712769 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.049325943 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.456817627 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.746639252 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490902 SAMN18351129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008995/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008995/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.791021347 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.091239929 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.712778091 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.291269302 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490903 SAMN18351131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008916/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008916/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.280792236 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.908626556 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.486310959 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.856639862 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490904 SAMN18351132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NM-CDC-STM-000008948/2021 GISAID_virus_name hCoV-19/USA/NM-CDC-STM-000008948/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: New Mexico lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.726566315 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.2960186 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.714040756 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.355735779 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490905 SAMN18351133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008964/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008964/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.54781723 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.317752838 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.039194107 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.687858582 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8490906 SAMN18351134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008980/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008980/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.124494553 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.043493271 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.495868683 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.618961334 lineage/clade name B.1.1.189 host_race White BioSampleModel Pathogen.cl SRS8490907 SAMN18351135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008988/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008988/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 72 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.744867325 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.041418076 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.800842285 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.672929764 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490908 SAMN18351136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WV-CDC-STM-000009209/2021 GISAID_virus_name hCoV-19/USA/WV-CDC-STM-000009209/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: West Virginia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.665489197 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.508398056 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.787359238 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.372116089 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490909 SAMN18351037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000008850/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000008850/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.245176315 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.096628189 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.774454117 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.782943726 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490910 SAMN18351138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000009225/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000009225/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.641460419 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.949453354 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.294326782 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.152235031 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490911 SAMN18351137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009217/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009217/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.877487183 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.602344513 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.146989822 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.799957275 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490912 SAMN18351139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009241/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009241/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.079530716 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.631324768 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.991617203 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.712741852 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490913 SAMN18351140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009257/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009257/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.217594147 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.598722458 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.746526718 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.391027451 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490914 SAMN18351142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009273/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009273/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.193977356 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.658319473 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.226276398 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.605592728 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490915 SAMN18351141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009265/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009265/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.823055267 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.672775269 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.120498657 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.794034958 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490916 SAMN18351143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009281/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009281/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.787446976 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.426021576 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.838979721 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.467834473 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490917 SAMN18351145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000009210/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000009210/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.821962357 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.035919189 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.75633049 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.165750504 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490918 SAMN18351144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009289/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009289/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.840391159 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.415052414 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.488161087 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.760955811 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490919 SAMN18351038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008858/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008858/2021 collected_by Helix collection_date 2021-02-01 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.715053558 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.47800827 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.126745224 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.315689087 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490920 SAMN18351146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009234/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009234/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.054405212 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.503520966 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.190824509 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.614753723 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490921 SAMN18351148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009266/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009266/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.952352524 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.281059265 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.048545837 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.508405685 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490922 SAMN18351147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009242/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009242/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.265077591 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.316480637 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.483709335 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.271001816 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490923 SAMN18351149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009274/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009274/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.989109039 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.880886078 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.001972198 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.746545792 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490924 SAMN18351150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009290/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009290/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.965747833 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.577604294 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.10918808 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.020589828 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490925 SAMN18351152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CO-CDC-STM-000009219/2021 GISAID_virus_name hCoV-19/USA/CO-CDC-STM-000009219/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Colorado lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.487966537 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.701353073 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.625047684 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.55140686 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490926 SAMN18351151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000009211/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000009211/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.933643341 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.491552353 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.997865677 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.909202576 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490927 SAMN18351153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009227/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009227/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.808746338 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.342048645 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.783706665 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.027456284 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490928 SAMN18351154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000009235/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000009235/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.898832321 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.618626595 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.264455795 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.147167206 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490929 SAMN18351155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000009243/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000009243/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.070360184 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.415225983 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.803739548 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.93296051 lineage/clade name B.1.369 host_race White BioSampleModel Pathogen.cl SRS8490930 SAMN18351039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/UT-CDC-STM-000008866/2021 GISAID_virus_name hCoV-19/USA/UT-CDC-STM-000008866/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Utah lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.254436493 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.458282471 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.158864975 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.80695343 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490931 SAMN18351157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009267/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009267/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.607572556 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.789455414 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.644224167 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.489151001 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8490932 SAMN18351156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000009259/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000009259/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.102676392 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.453380585 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.107584 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.729932785 lineage/clade name B.1.1.222 host_race Black or African American BioSampleModel Pathogen.cl SRS8490933 SAMN18351158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009275/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009275/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.106884003 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.53238678 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.433097839 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.740497589 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490934 SAMN18351159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000009291/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000009291/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.753875732 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.720453262 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.137798309 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.658010483 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490935 SAMN18351161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000009220/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000009220/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.562067032 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.304420471 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.377363205 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.713790894 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490936 SAMN18351160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009204/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009204/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.412654877 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.761674881 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.793428421 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.631633759 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490937 SAMN18351162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009236/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009236/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.535511017 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.793746948 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.741083145 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.709861755 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8490938 SAMN18351164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000009252/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000009252/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 94 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.642011642 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.846372604 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.455900192 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 28.029075623 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8490939 SAMN18351163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009244/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009244/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.241685867 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.663986206 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.986877441 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.863639832 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490940 SAMN18351165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000009260/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000009260/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.294145584 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.565904617 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.027769089 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.750406265 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8490941 SAMN18351040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008874/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008874/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.902227402 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.719367981 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.384515762 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.439357758 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490942 SAMN18351167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000009292/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000009292/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.40545845 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.012550354 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.302505493 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.432735443 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8490943 SAMN18351166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000009284/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-000009284/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.707101822 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.73317337 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.52904129 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.70315361 lineage/clade name B.1.2 host_race Mixed BioSampleModel Pathogen.cl SRS8490944 SAMN18351168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009205/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009205/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.796459198 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.199871063 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.481277466 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.271459579 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490945 SAMN18351170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000009285/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000009285/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.75419426 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.314464569 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.814653397 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.748632431 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490946 SAMN18351169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009245/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009245/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.354700089 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.82790947 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.577630997 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.64153862 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490947 SAMN18351171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009293/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009293/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.53752327 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.220773697 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.811285019 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.634170532 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490948 SAMN18351172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009214/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009214/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.63038063 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.259187698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.438705444 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.559875488 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490949 SAMN18351173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/WA-CDC-STM-000009222/2021 GISAID_virus_name hCoV-19/USA/WA-CDC-STM-000009222/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Washington lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.535829544 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.793546677 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.708978653 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.706972122 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490950 SAMN18351174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009238/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009238/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.798213959 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.037612915 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.349304199 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.745853424 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490951 SAMN18351175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009270/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009270/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.440406799 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.532016754 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.839118958 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.35603714 lineage/clade name B.1.361 host_race White BioSampleModel Pathogen.cl SRS8490952 SAMN18351041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000008882/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000008882/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.640687943 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.801166534 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.58174324 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.590181351 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490953 SAMN18351176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009278/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009278/2021 collected_by Helix collection_date 2021-02-01 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.423053741 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.167001724 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.888406754 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.835140228 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490954 SAMN18351177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000009286/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000009286/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.15162468 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.9802742 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.518148422 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.475404739 lineage/clade name B.1.433 host_race Unspecified BioSampleModel Pathogen.cl SRS8490955 SAMN18351179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009215/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009215/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.357625961 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.970314026 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.453046799 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.789129257 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490956 SAMN18351178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009294/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009294/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.208690643 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.854400635 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.644891739 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.547143936 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490957 SAMN18351180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009223/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009223/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.514818192 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.817733765 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.248720169 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.807949066 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8490958 SAMN18351181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000009263/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000009263/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.278711319 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.11403656 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.42358017 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.286231995 lineage/clade name B.1.517 host_race Unspecified BioSampleModel Pathogen.cl SRS8490959 SAMN18351182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009271/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009271/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.989847183 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.308834076 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.751508713 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.587018967 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490960 SAMN18351183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009287/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009287/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.529457092 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.474250793 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.28619957 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.893808365 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490961 SAMN18351185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009208/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009208/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.782320023 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.978038788 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.882789612 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.974628448 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8490962 SAMN18351531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011206/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011206/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.798456192 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.76848793 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.877634048 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.839332581 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490963 SAMN18351184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009295/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009295/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.682735443 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.629095078 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.157047272 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.689876556 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8490964 SAMN18351532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011214/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011214/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.704462051 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.731594086 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.794885635 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.486257553 lineage/clade name B.1.1.222 host_race Latino BioSampleModel Pathogen.cl SRS8490965 SAMN18351535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011238/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011238/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.769975662 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.278518677 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.134309769 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.806451797 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490966 SAMN18351533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MD-CDC-STM-000011222/2021 GISAID_virus_name hCoV-19/USA/MD-CDC-STM-000011222/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Maryland lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.006587982 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.016740799 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.375513077 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.710855484 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8490967 SAMN18351534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000011230/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000011230/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.284425735 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.14809227 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.061477661 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.622186661 lineage/clade name B.1.429 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8490968 SAMN18351077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CT-CDC-STM-000008894/2021 GISAID_virus_name hCoV-19/USA/CT-CDC-STM-000008894/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Connecticut lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.223644257 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.827360153 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.72933197 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.58864212 lineage/clade name B.1.509 host_race White BioSampleModel Pathogen.cl SRS8490969 SAMN18351537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011254/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011254/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.868976593 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.359565735 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.653812408 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.55982399 lineage/clade name B.1 host_race Black or African American BioSampleModel Pathogen.cl SRS8490970 SAMN18351539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011270/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011270/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.018564224 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.381040573 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.263938904 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.519353867 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490971 SAMN18351536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000011246/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000011246/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.801296234 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.662593842 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.007621765 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.79901123 lineage/clade name B.1.427 host_race American Indian or Alaska Native BioSampleModel Pathogen.cl SRS8490972 SAMN18351538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000011262/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000011262/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.403255463 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.53405571 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.791982651 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.368204117 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8490973 SAMN18351540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011278/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011278/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.268442154 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.834352493 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.833351135 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.777154922 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8490974 SAMN18351541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011286/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011286/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.028944016 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.797992706 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.530866623 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.439002991 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8490975 SAMN18351543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011263/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011263/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.427404404 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.319177628 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.956031799 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.961193085 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8490976 SAMN18351542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011247/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011247/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.733825684 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.13659668 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.413385391 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.020475388 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8490977 SAMN18351544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011271/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011271/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.06580925 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.524871826 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.199054718 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.913349152 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490978 SAMN18351545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000011287/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000011287/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.919345856 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.497829437 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.137172699 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.164178848 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490979 SAMN18351078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008807/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008807/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.817146301 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.092084885 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.551582336 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.592308044 lineage/clade name B.1.400 host_race White BioSampleModel Pathogen.cl SRS8490980 SAMN18351546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011295/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011295/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.734258652 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.752717972 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.15681076 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.348510742 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490981 SAMN18351548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000011216/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-000011216/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 35.315876007 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.081558228 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.463539124 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.393867493 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8490982 SAMN18351547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000011208/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000011208/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.590595245 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.79441452 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.555082321 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.742120743 lineage/clade name B.1.1.1 host_race White BioSampleModel Pathogen.cl SRS8490983 SAMN18351549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011224/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011224/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.548847198 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.819971085 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.460456848 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.886606216 lineage/clade name B.1.234 host_race Black or African American BioSampleModel Pathogen.cl SRS8490984 SAMN18351550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000011240/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000011240/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.419242859 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.888456345 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.531553268 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.720867157 lineage/clade name B.1.427 host_race American Indian or Alaska Native BioSampleModel Pathogen.cl SRS8490985 SAMN18351552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000011256/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000011256/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.157302856 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.607009888 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.465480804 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.754274368 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8490986 SAMN18351551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011248/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011248/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.799383163 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.738340378 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.237686157 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.468378067 lineage/clade name B.1.1.85 host_race White BioSampleModel Pathogen.cl SRS8490987 SAMN18351553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011264/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011264/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.06414032 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.921880722 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.397249222 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.278676987 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490988 SAMN18351554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011272/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011272/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.028203964 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.769004822 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.650854111 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.771749496 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490989 SAMN18351555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011280/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011280/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.515087128 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.841093063 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.330896378 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.61000824 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490990 SAMN18351557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007409/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007409/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.934265137 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.780845642 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.754152298 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.346298218 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490991 SAMN18351556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011288/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011288/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.755384445 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.414430618 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.304765701 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.044143677 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8490992 SAMN18351079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008815/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008815/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.477689743 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.667182922 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.28612709 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.602340698 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8490993 SAMN18351558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000007417/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000007417/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.62774086 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.388151169 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.975576401 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.531864166 lineage/clade name B.1.1.85 host_race Unspecified BioSampleModel Pathogen.cl SRS8490994 SAMN18351042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008803/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008803/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.714191437 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.583896637 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.69682312 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.191415787 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8490995 SAMN18351186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000009216/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000009216/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.30022049 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.357402802 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.753042221 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.110876083 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490996 SAMN18351559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007433/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007433/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.613430023 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.26571846 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.683870316 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.22319603 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8490997 SAMN18351188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000009248/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000009248/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.48286438 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.262317657 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.496862411 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.842636108 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8490998 SAMN18351189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009256/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009256/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.903533936 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.05072403 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.667631149 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.635412216 lineage/clade name B.1.1.171 host_race Black or African American BioSampleModel Pathogen.cl SRS8490999 SAMN18351187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000009240/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000009240/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.528917313 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.736278534 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.228759766 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.079662323 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491000 SAMN18351190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000009264/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000009264/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.752080917 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.132583618 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.092489243 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.612535477 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8491001 SAMN18351191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MN-CDC-STM-000009280/2021 GISAID_virus_name hCoV-19/USA/MN-CDC-STM-000009280/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Minnesota lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.529699326 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.604354858 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.344017029 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.811727524 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491002 SAMN18351192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000009288/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000009288/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.198699951 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.759866714 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.101884842 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.863449097 lineage/clade name B.1.232 host_race Latino BioSampleModel Pathogen.cl SRS8491003 SAMN18351193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010209/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010209/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.532735825 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.474178314 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.343957901 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.718355179 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8491004 SAMN18351194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010225/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010225/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.298549652 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.8757267 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.367649078 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.529346466 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491005 SAMN18351195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010233/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010233/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.410223007 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.875732422 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.485668182 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.814477921 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8491006 SAMN18351196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010241/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010241/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.527391434 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.033988953 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.647750854 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.469442368 lineage/clade name B.1.1.75 host_race White BioSampleModel Pathogen.cl SRS8491007 SAMN18351043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TN-CDC-STM-000008811/2021 GISAID_virus_name hCoV-19/USA/TN-CDC-STM-000008811/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Tennessee lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.299388885 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.650987625 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.058231354 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.762521744 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491008 SAMN18351197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010249/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010249/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.343069077 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.756986618 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.807516098 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.456249237 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491009 SAMN18351198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010257/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010257/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.368005753 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.611085892 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.940631866 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.362047195 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491010 SAMN18351199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010265/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010265/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.145259857 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.756494522 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.212833405 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.869949341 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491011 SAMN18351200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010273/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010273/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.945594788 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.338424683 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.960866928 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.494918823 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491012 SAMN18351201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010281/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010281/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.43044281 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.281732559 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.954429626 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.746900558 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491013 SAMN18351202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010289/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010289/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.75944519 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.804742813 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.603952408 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.624238968 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8491014 SAMN18351204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010210/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010210/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.759038925 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.763231277 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.159795761 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.980398178 lineage/clade name B.1.427 host_race Asian BioSampleModel Pathogen.cl SRS8491015 SAMN18351203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010202/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010202/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.726667404 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.38193512 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.259311676 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.8436203 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8491016 SAMN18351205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010226/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010226/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.432563782 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.421098709 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.800495148 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.642206192 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8491017 SAMN18351044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008819/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008819/2021 collected_by Helix collection_date 2021-02-01 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.053043365 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.352272034 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.812372208 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.543621063 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8491018 SAMN18351206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010234/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010234/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.016311646 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.639772415 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.77047348 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.551446915 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491019 SAMN18351207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010242/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010242/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.108211517 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.782747269 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.190258026 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.82516861 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491020 SAMN18351208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010250/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010250/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.648109436 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.087860107 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.410202026 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.389673233 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491021 SAMN18351209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010266/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010266/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.287620544 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.458776474 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.77869606 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.485086441 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491022 SAMN18351210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010274/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010274/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.762123108 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.188581467 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.745559692 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.138246536 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491023 SAMN18351211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010290/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010290/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.768461227 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.579509735 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.538129807 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.257303238 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8491024 SAMN18351212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010211/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010211/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.332641602 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.66163063 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.853618622 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.008262634 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491025 SAMN18351213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010227/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010227/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.431348801 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.465744019 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.708955765 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.421970367 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491026 SAMN18351214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010235/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010235/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.202796936 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.366901398 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.771993637 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.790956497 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491027 SAMN18351560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007441/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007441/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.598987579 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.963817596 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.981243134 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.314256668 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491028 SAMN18351561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007457/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007457/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.106300354 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.766756058 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.279262543 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.821411133 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491029 SAMN18351562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007481/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007481/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.839021683 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.345993042 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.73800087 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.542310715 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491030 SAMN18351564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007410/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007410/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.762886047 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.558433533 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.238737106 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.655719757 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8491031 SAMN18351563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007489/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007489/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.058719635 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.349376678 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.83111763 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.950119019 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8491032 SAMN18351565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007418/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007418/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.236858368 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.406862259 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.838443756 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.393508911 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491033 SAMN18351080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000008823/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000008823/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.4858284 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.158721924 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.439008713 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.315393448 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491034 SAMN18351566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007426/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007426/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.151908875 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.005716324 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.631166458 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.241649628 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491035 SAMN18351567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007434/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007434/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.893648148 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.732528687 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.33023262 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.816274643 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8491036 SAMN18351568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007450/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007450/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.28868866 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.751461029 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.879154205 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.813793182 lineage/clade name B.1.395 host_race Asian BioSampleModel Pathogen.cl SRS8491037 SAMN18351569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007458/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007458/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.848653793 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.814630508 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.210554123 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.619943619 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8491038 SAMN18351570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007466/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007466/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.786838531 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.195056915 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.840665817 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.823957443 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8491039 SAMN18351572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007490/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007490/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.394006729 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.839056015 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.070798874 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.78940773 lineage/clade name B.1.429 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8491040 SAMN18351573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007403/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007403/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.541383743 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.870307922 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.685905457 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.778203964 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491041 SAMN18351571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007474/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007474/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.333675385 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.528652191 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.399065018 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.881835938 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491042 SAMN18351574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007411/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007411/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.93353653 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.070217133 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.753580093 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.374328613 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491043 SAMN18351575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007419/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007419/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.479728699 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.568294525 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.821134567 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.683513641 lineage/clade name B.1.311 host_race Unspecified BioSampleModel Pathogen.cl SRS8491044 SAMN18351576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007427/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007427/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.774801254 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.333866119 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.369207382 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.513460159 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491045 SAMN18351577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007443/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007443/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.543582916 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.602954865 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.824743271 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.840961456 lineage/clade name B.1.234 host_race Black or African American BioSampleModel Pathogen.cl SRS8491046 SAMN18351081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008831/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008831/2021 collected_by Helix collection_date 2021-01-31 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.757528305 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.771097183 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.071060181 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.358966827 lineage/clade name B.1.311 host_race Unspecified BioSampleModel Pathogen.cl SRS8491047 SAMN18351578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007451/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007451/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.343442917 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.79284668 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.631580353 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.092662811 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8491048 SAMN18351579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007459/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007459/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.346191406 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.872732162 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.714538574 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.038225174 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491049 SAMN18351580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007467/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007467/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.371810913 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.824859619 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.67603302 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.206699371 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8491050 SAMN18351581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007483/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007483/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.611280441 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.198663712 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.764226913 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.000772476 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491051 SAMN18351582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007491/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007491/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.292442322 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.111234665 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.164049149 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.483030319 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8491052 SAMN18351583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007404/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007404/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.67502594 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.800647736 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.321796417 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.826784134 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491053 SAMN18351584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007412/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007412/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.148952484 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.413564682 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.889308929 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.796890259 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8491054 SAMN18351585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007420/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007420/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.064426422 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.365411758 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.216661453 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.162612915 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491055 SAMN18351082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008839/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008839/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.043598175 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.974485397 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.635128021 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.365343094 lineage/clade name P.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491056 SAMN18351587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007436/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007436/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.776184082 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.932495117 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.282207489 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.664751053 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491057 SAMN18351586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007428/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007428/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.146045685 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.416002274 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.815418243 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.596385956 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8491058 SAMN18351588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007444/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007444/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.861320496 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.873470306 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.33956337 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.232616425 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491059 SAMN18351215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000010243/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000010243/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.438869476 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.819498062 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.875871658 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.561130524 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491060 SAMN18351216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010251/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010251/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.85603714 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.634555817 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.53827095 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.856550217 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491061 SAMN18351045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008827/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008827/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.652667999 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.170148849 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.588802338 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.246120453 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491062 SAMN18351217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010259/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010259/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 34.017456055 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.898008347 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.448701859 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.806718826 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8491063 SAMN18351218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010267/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010267/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.998146057 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.395174026 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.942569733 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.727058411 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8491064 SAMN18351220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010291/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010291/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.344297409 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.942163467 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.019756317 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.640954971 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491065 SAMN18351219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010275/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010275/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.430654526 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.192806244 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.919881821 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.787006378 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491066 SAMN18351221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000010212/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000010212/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.211126328 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.611713409 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.897510529 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.564838409 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491067 SAMN18351222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010220/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010220/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.883460999 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.615739822 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.15700531 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.792476654 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491068 SAMN18351223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010228/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010228/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.015182495 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.276655197 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.336036682 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.854986191 lineage/clade name B.1.110.3 host_race White BioSampleModel Pathogen.cl SRS8491069 SAMN18351224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010236/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010236/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.470373154 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.836559296 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.570152283 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.740625381 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491070 SAMN18351225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010252/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010252/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.176660538 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.525733948 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.333414078 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.683612823 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491071 SAMN18351028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008841/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008841/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.330200195 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.70819664 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.761669159 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.378686905 lineage/clade name B.1.429 host_race Asian BioSampleModel Pathogen.cl SRS8491072 SAMN18351046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008835/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008835/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 34.15114212 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.078451157 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.535865784 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.297698975 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491073 SAMN18351226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010260/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010260/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.984760284 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.046150208 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.742952347 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.772569656 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491074 SAMN18351227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000010268/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000010268/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.500923157 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.850923538 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.142681122 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.753265381 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491075 SAMN18351228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010276/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010276/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.349681854 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.691846848 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.324192047 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.1359272 lineage/clade name B.1.1.222 host_race Latino BioSampleModel Pathogen.cl SRS8491076 SAMN18351229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010284/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010284/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.804174423 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.747203827 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.954902649 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay lineage/clade name B.1.258 host_race Unspecified BioSampleModel Pathogen.cl SRS8491077 SAMN18351230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010292/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010292/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.043869019 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.59405899 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.079387665 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.784606934 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491078 SAMN18351234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010229/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010229/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.770343781 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.351419449 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.178056717 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.628253937 lineage/clade name B.1.427 host_race Asian BioSampleModel Pathogen.cl SRS8491079 SAMN18351231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010205/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010205/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.728363037 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.824552536 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.329828262 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.578121185 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8491080 SAMN18351233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000010221/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000010221/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.702682495 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.285757065 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.697027206 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.423168182 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491081 SAMN18351232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010213/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010213/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.567144394 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.885129929 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.778844833 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.835142136 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8491082 SAMN18351235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010237/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010237/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.069478989 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.97435379 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 28.179069519 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.869783401 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491083 SAMN18351236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000010245/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000010245/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.610370636 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.052190781 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.554506302 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.851716995 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8491084 SAMN18351047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008843/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008843/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.601449966 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.629810333 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.444812775 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.352426529 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491085 SAMN18351237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010253/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010253/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.791799545 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.059192657 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.247911453 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.813156128 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491086 SAMN18351238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010269/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010269/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.633358002 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.625125885 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.142251968 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.837162018 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491087 SAMN18351239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010277/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010277/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.91375351 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.684772491 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.666597366 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.288433075 lineage/clade name B.1.1.189 host_race White BioSampleModel Pathogen.cl SRS8491088 SAMN18351240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010285/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010285/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.684223175 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.436862946 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.050861359 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.35011673 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491089 SAMN18351241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/SC-CDC-STM-000010293/2021 GISAID_virus_name hCoV-19/USA/SC-CDC-STM-000010293/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: South Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.919986725 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.779254913 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.576028824 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.797531128 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491090 SAMN18351242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010206/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010206/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.575527191 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.304367065 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.94943428 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.088546753 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491091 SAMN18351589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007452/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007452/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.376264572 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.531625748 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.763362885 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.738430023 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8491092 SAMN18351590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/LA-CDC-STM-000007460/2021 GISAID_virus_name hCoV-19/USA/LA-CDC-STM-000007460/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Louisiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.805015564 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.595125198 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.723913193 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.774629593 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8491093 SAMN18351591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007468/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007468/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.288379669 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.758440018 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.364969254 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.05115509 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491094 SAMN18351592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007476/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007476/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.490180969 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.117534637 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.784828186 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.928215027 lineage/clade name B.1.427 host_race Unspecified BioSampleModel Pathogen.cl SRS8491095 SAMN18351593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007484/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007484/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.326095581 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.789840698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.145334244 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.500125885 lineage/clade name B.1.404 host_race Unspecified BioSampleModel Pathogen.cl SRS8491096 SAMN18351594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007492/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007492/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.268819809 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.120010376 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.89746666 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.629652023 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491097 SAMN18351595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007405/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007405/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.387607574 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.652851105 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.360805511 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.853416443 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491098 SAMN18351083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000008855/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000008855/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.004959106 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.33316803 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.711389542 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.794221878 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491099 SAMN18351596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007421/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007421/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.281446457 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.672063828 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.974557877 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.106643677 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491100 SAMN18351597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007429/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007429/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.303359985 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.847770691 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.044713974 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.795930862 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491101 SAMN18351598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007437/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007437/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.649261475 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.208236694 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.733888626 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.653268814 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491102 SAMN18351599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-000007445/2021 GISAID_virus_name hCoV-19/USA/NJ-CDC-STM-000007445/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: New Jersey lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.482414246 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.929527283 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.191764832 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.725627899 lineage/clade name B.1.409 host_race White BioSampleModel Pathogen.cl SRS8491103 SAMN18351600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007453/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007453/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.94862175 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.435726166 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.826728821 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.711147308 lineage/clade name B.1.1.304 host_race White BioSampleModel Pathogen.cl SRS8491104 SAMN18351601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007461/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007461/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.306219101 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.80027771 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.313638687 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.689723969 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8491105 SAMN18351602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007469/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007469/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.66929245 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.189727783 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.759397507 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.615909576 lineage/clade name B.1.2 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8491106 SAMN18351603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007477/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007477/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.890245438 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.176315308 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.797700882 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 15.954762459 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491107 SAMN18351605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007406/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007406/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.684204102 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.504228592 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.847370148 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.351596832 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8491108 SAMN18351604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007485/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007485/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.422660828 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.825428009 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.734807968 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.819219589 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8491109 SAMN18351606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007414/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007414/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.37030983 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.377534866 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.984394073 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.940158844 lineage/clade name B.1.243 host_race Black or African American BioSampleModel Pathogen.cl SRS8491110 SAMN18351084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008863/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008863/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 23.69862175 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.306560516 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.388723373 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.686580658 lineage/clade name B.1.409 host_race White BioSampleModel Pathogen.cl SRS8491111 SAMN18351607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007422/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007422/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.864715576 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.67647171 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.040607452 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.816581726 lineage/clade name B.1.433 host_race White BioSampleModel Pathogen.cl SRS8491112 SAMN18351608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007430/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007430/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.419887543 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.679412842 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.900569916 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.661405563 lineage/clade name B.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8491113 SAMN18351609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007438/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007438/2021 collected_by Helix collection_date 2021-01-30 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.763616562 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.285772324 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.903614044 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.404054642 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491114 SAMN18351611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007462/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007462/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.99123764 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.551317215 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.191053391 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.61532402 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491115 SAMN18351612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007470/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007470/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.142568588 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.300283432 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.763664246 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.470905304 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491116 SAMN18351610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000007446/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000007446/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.756040573 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.151769638 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.818727493 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.859905243 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491117 SAMN18351613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007478/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007478/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.734876633 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.827402115 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.530794144 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.169200897 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491118 SAMN18351614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000007486/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000007486/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.616977692 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.237148285 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.882423401 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.669204712 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491119 SAMN18351615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007407/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007407/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.848913193 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.862894058 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.378087997 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.78037262 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8491120 SAMN18351085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MI-CDC-STM-000008887/2021 GISAID_virus_name hCoV-19/USA/MI-CDC-STM-000008887/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Michigan lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.416372299 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.34192276 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.786664963 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.945796967 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491121 SAMN18351616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007423/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007423/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.554815292 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.775249481 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.217632294 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.267896652 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8491122 SAMN18351617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000007431/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000007431/2021 collected_by Helix collection_date 2021-01-29 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.836713791 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.056114197 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.349292755 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.600633621 lineage/clade name B.1.369 host_race Asian BioSampleModel Pathogen.cl SRS8491123 SAMN18351026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008825/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008825/2021 collected_by Helix collection_date 2021-02-01 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.475780487 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.937412262 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.490703583 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.156885147 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491124 SAMN18351027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008833/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008833/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.313440323 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.785842896 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.48718071 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.76266861 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491125 SAMN18351036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000008842/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000008842/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.924772263 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.754018784 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.117656708 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.942306519 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491126 SAMN18351126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/OH-CDC-STM-000008931/2021 GISAID_virus_name hCoV-19/USA/OH-CDC-STM-000008931/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Ohio lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.881868362 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.580148697 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.941667557 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.706905365 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491127 SAMN18351244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010222/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010222/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.809659958 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.580625534 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.321706772 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.647161484 lineage/clade name B.1.1.274 host_race Asian BioSampleModel Pathogen.cl SRS8491128 SAMN18351245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010230/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010230/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.964012146 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.774312973 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.708930969 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.159757614 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491129 SAMN18351243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010214/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010214/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.414678574 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.392274857 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.836799622 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.004249573 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491130 SAMN18351048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000008859/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000008859/2021 collected_by Helix collection_date 2021-01-31 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.550691605 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.527242661 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.879999161 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.555814743 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8491131 SAMN18351246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010238/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010238/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.990661621 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.249528885 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.957239151 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.255823135 lineage/clade name B.1.243 host_race White BioSampleModel Pathogen.cl SRS8491132 SAMN18351248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010254/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010254/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.830102921 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.925954819 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.044803619 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.224681854 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8491133 SAMN18351247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000010246/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000010246/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.770023346 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.807922363 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.753046036 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.64302063 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491134 SAMN18351249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010262/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010262/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.091743469 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.711885452 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.285938263 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.57359314 lineage/clade name B.1.234 host_race White BioSampleModel Pathogen.cl SRS8491135 SAMN18351251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010278/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010278/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.369009018 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.333133698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.053035736 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.344682693 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491136 SAMN18351250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010270/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010270/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.38955307 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.360160828 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.967094421 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.749773026 lineage/clade name B.1.429 host_race Black or African American BioSampleModel Pathogen.cl SRS8491137 SAMN18351252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010286/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010286/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.002895355 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.678468704 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.957437515 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.631662369 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491138 SAMN18351253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010294/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010294/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.031183243 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.397880554 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.323312759 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.687221527 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491139 SAMN18351254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010207/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010207/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.836179733 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.969078064 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.79838562 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.235523224 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491140 SAMN18351255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010223/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010223/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.292331696 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.418827057 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.735900879 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.065340042 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491141 SAMN18351049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/KY-CDC-STM-000008867/2021 GISAID_virus_name hCoV-19/USA/KY-CDC-STM-000008867/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Kentucky lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.677301407 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.944026947 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.717405319 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.753128052 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491142 SAMN18351256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010231/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010231/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.924125671 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.608285904 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.325628281 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.581659317 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491143 SAMN18351258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010247/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010247/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.25087738 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.223356247 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.099224091 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.80887413 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491144 SAMN18351259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010255/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010255/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.677839279 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.747346878 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.622900009 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.940105438 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491145 SAMN18351257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-000010239/2021 GISAID_virus_name hCoV-19/USA/AZ-CDC-STM-000010239/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Arizona lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.183256149 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.030834198 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.911830902 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.834152222 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491146 SAMN18351260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010263/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010263/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 4 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.448101044 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.355039597 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.401674271 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.675901413 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491147 SAMN18351261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010271/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010271/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.243280411 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.647548676 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.601049423 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.161653519 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491148 SAMN18351263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010295/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010295/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.79142952 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.431110382 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.904546738 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.744335175 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491149 SAMN18351262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010287/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010287/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.660358429 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.797193527 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.797861099 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.653133392 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491150 SAMN18351264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010208/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010208/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.104259491 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.319545746 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.884334564 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.742162704 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491151 SAMN18351265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010216/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010216/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.305051804 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.822024345 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.590621948 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.97817421 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8491152 SAMN18351050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008875/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008875/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.104822159 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.751596451 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.130876541 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.581050873 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491153 SAMN18351266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010224/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010224/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.463212967 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.199026108 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.585502625 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.138088226 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491154 SAMN18351267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010232/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010232/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.342006683 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.198816299 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.78565979 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.1833992 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8491155 SAMN18351269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010256/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010256/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.695650101 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.89270401 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.681093216 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.33465004 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491156 SAMN18351270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010264/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010264/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.825042725 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.784200668 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.360012054 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.738283157 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491157 SAMN18351268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010248/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010248/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.659318924 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 17.742517471 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.688663483 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.876264572 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491158 SAMN18351271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010272/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010272/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.511022568 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.793464661 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.555053711 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.813093185 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8491159 SAMN18351272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000010280/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000010280/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.639890671 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.752296448 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.996204376 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.956960678 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8491160 SAMN18351273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010288/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010288/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.740507126 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.508600235 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.636367798 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.215927124 lineage/clade name B.1 host_race Latino BioSampleModel Pathogen.cl SRS8491161 SAMN18351274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010409/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010409/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.613847733 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.686382294 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.088563919 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.284515381 lineage/clade name B.1.427 host_race White BioSampleModel Pathogen.cl SRS8491162 SAMN18351275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010417/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010417/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.256095886 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.795188904 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.511816025 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.531471252 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491163 SAMN18351051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008883/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008883/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.789834976 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.943964005 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.788906097 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.776451111 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491164 SAMN18351276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010425/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010425/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.339544296 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.621088028 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.46739769 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.369775772 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491165 SAMN18351277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010433/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010433/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 25.234466553 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.52832222 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.595645905 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.445756912 lineage/clade name B.1.433 host_race White BioSampleModel Pathogen.cl SRS8491166 SAMN18351278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000010441/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000010441/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.431791306 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.724246979 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.595602036 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.077041626 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491167 SAMN18351279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010449/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010449/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.242563248 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.730113983 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.609373093 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.63833046 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491168 SAMN18351281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010481/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010481/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.187602997 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.431509018 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.824783325 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.679460526 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8491169 SAMN18351280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010457/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010457/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.827754974 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.911677361 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.626670837 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.952892303 lineage/clade name B.1.1.222 host_race Unspecified BioSampleModel Pathogen.cl SRS8491170 SAMN18351284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010410/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010410/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.494642258 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.792549133 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.831684113 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.537603378 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491171 SAMN18351283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010402/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010402/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.843288422 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.395517349 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.542333603 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.082653046 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491172 SAMN18351282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000010489/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000010489/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.877506256 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.843185425 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.162509918 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.940898895 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8491173 SAMN18351052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008891/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008891/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.295558929 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.861639023 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.618301392 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.817394257 lineage/clade name B.1.2 host_race Asian BioSampleModel Pathogen.cl SRS8491174 SAMN18351286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010442/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010442/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.113929749 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.211051941 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.22108078 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.145084381 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8491175 SAMN18351287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010450/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010450/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 22.226448059 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.772493362 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.757629395 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.566160202 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491176 SAMN18351288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010458/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010458/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.46648407 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.131799698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.695972443 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.149265289 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491177 SAMN18351285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010418/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010418/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.037620544 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.546949387 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.081773758 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.780744553 lineage/clade name B.1.349 host_race White BioSampleModel Pathogen.cl SRS8491178 SAMN18351289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010466/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010466/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.773096085 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.057889938 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.601833344 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.713161469 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491179 SAMN18351290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010490/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010490/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.822660446 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.365480423 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.827371597 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.953184128 lineage/clade name B.1.1 host_race Unspecified BioSampleModel Pathogen.cl SRS8491180 SAMN18351291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000010403/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000010403/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.003000259 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.139781952 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.795301437 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.45230484 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491181 SAMN18351292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010411/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010411/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.503562927 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.371076584 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.596794128 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.20438385 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491182 SAMN18351295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010451/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010451/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.636520386 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.755872726 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.405672073 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.851877213 lineage/clade name B.1.361 host_race Unspecified BioSampleModel Pathogen.cl SRS8491183 SAMN18351294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010427/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010427/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.658752441 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.584646225 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 23.615428925 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.355314255 lineage/clade name B.1.429 host_race Unspecified BioSampleModel Pathogen.cl SRS8491184 SAMN18351293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/PA-CDC-STM-000010419/2021 GISAID_virus_name hCoV-19/USA/PA-CDC-STM-000010419/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Pennsylvania lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.137369156 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.675632477 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.161792755 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.913291931 lineage/clade name B.1.240 host_race White BioSampleModel Pathogen.cl SRS8491185 SAMN18351053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008804/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008804/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.79867363 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.92388916 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.668031693 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.747953415 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491186 SAMN18351297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010467/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010467/2021 collected_by Helix collection_date 2021-02-06 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 37.859642029 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 26.999277115 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 27.399534225 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.659053802 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491187 SAMN18351296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IN-CDC-STM-000010459/2021 GISAID_virus_name hCoV-19/USA/IN-CDC-STM-000010459/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Indiana lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.833396912 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.374990463 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.127275467 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.969076157 lineage/clade name B.1.265 host_race White BioSampleModel Pathogen.cl SRS8491188 SAMN18351298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010475/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010475/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.081504822 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.616771698 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.967077255 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.787801743 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491189 SAMN18351300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000010491/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000010491/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.091001511 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.092468262 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.232400894 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.042406082 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491190 SAMN18351299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000010483/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000010483/2021 collected_by Helix collection_date 2021-02-07 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.305438995 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.707208633 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.499612808 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.210289001 lineage/clade name B.1.2 host_race Native Hawaiian or Other Pacific Islander BioSampleModel Pathogen.cl SRS8491191 SAMN18351878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011879/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011879/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.302991867 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.214010239 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.694858551 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.590480804 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491192 SAMN18351877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011871/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011871/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 26.381061554 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 23.722490311 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 24.498975754 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 24.43507576 lineage/clade name B.1.177 host_race Unspecified BioSampleModel Pathogen.cl SRS8491193 SAMN18351880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011816/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011816/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.747390747 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.804697037 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.751573563 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.75636673 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491194 SAMN18351879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000011887/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000011887/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 24.506593704 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.12612915 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.233989716 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.7688694 lineage/clade name B.1.110.3 host_race White BioSampleModel Pathogen.cl SRS8491195 SAMN18351881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011824/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011824/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 32.932823181 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 24.746646881 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.243024826 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 25.490865707 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491196 SAMN18351882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/IL-CDC-STM-000011832/2021 GISAID_virus_name hCoV-19/USA/IL-CDC-STM-000011832/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Illinois lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.785516739 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.163978577 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.85459137 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 18.983364105 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl SRS8491197 SAMN18351883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/GA-CDC-STM-000011856/2021 GISAID_virus_name hCoV-19/USA/GA-CDC-STM-000011856/2021 collected_by Helix collection_date 2021-02-08 geo_loc_name USA: Georgia lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.176145554 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.376747131 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.28470993 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.048313141 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491198 SAMN18351885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000011872/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000011872/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.714206696 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 14.179796219 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 14.926350594 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 14.925982475 lineage/clade name B.1.1.262 host_race Unspecified BioSampleModel Pathogen.cl SRS8491199 SAMN18351112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008992/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008992/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.467370987 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.604909897 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 17.811882019 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 17.266590118 lineage/clade name B.1.311 host_race White BioSampleModel Pathogen.cl SRS8491200 SAMN18351884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000011864/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000011864/2021 collected_by Helix collection_date 2021-02-10 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 48 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 30.669837952 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 21.26461792 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.335012436 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 22.338628769 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491201 SAMN18351886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000011880/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000011880/2021 collected_by Helix collection_date 2021-02-09 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.302783966 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.596782684 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.807910919 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.925470352 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8491202 SAMN18351113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008905/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008905/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 29.127277374 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.276046753 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.730304718 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.355003357 lineage/clade name B.1.1.222 host_race White BioSampleModel Pathogen.cl SRS8491203 SAMN18351114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008921/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008921/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.062156677 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.491163254 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 18.78219223 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 19.575986862 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491204 SAMN18351115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/NC-CDC-STM-000008937/2021 GISAID_virus_name hCoV-19/USA/NC-CDC-STM-000008937/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: North Carolina lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.397920609 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 19.360044479 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.469104767 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.055078506 lineage/clade name B.1 host_race White BioSampleModel Pathogen.cl SRS8491205 SAMN18351035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008834/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008834/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.515577316 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.65712738 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 21.113531113 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.796703339 lineage/clade name B.1.427 host_race Latino BioSampleModel Pathogen.cl SRS8491206 SAMN18351117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008961/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008961/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.12379837 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 18.802946091 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 19.24745369 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 20.062643051 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8491207 SAMN18351116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008953/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008953/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 91 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 28.238672256 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.553666115 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.03355217 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.481109619 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491208 SAMN18351119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008993/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008993/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 21.721340179 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 16.273319244 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 16.81303215 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.813827515 lineage/clade name B.1.429 host_race White BioSampleModel Pathogen.cl SRS8491209 SAMN18351118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MA-CDC-STM-000008969/2021 GISAID_virus_name hCoV-19/USA/MA-CDC-STM-000008969/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Massachusetts lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.379833221 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.423070908 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.970119476 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.302015305 lineage/clade name B.1.517 host_race White BioSampleModel Pathogen.cl SRS8491210 SAMN18351120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008922/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008922/2021 collected_by Helix collection_date 2021-02-05 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 31.632476807 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.195569992 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 25.626113892 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.313144684 lineage/clade name B.1.2 host_race Latino BioSampleModel Pathogen.cl SRS8491211 SAMN18351121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/DE-CDC-STM-000008930/2021 GISAID_virus_name hCoV-19/USA/DE-CDC-STM-000008930/2021 collected_by Helix collection_date 2021-02-02 geo_loc_name USA: Delaware lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.770448685 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.401599884 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.87682724 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 27.016113281 lineage/clade name B.1.2 host_race Black or African American BioSampleModel Pathogen.cl SRS8491212 SAMN18351122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/TX-CDC-STM-000008962/2021 GISAID_virus_name hCoV-19/USA/TX-CDC-STM-000008962/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Texas lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.793540955 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 20.005882263 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 20.793516159 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 21.508329391 lineage/clade name B.1.243 host_race Unspecified BioSampleModel Pathogen.cl SRS8491213 SAMN18351123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/MO-CDC-STM-000008970/2021 GISAID_virus_name hCoV-19/USA/MO-CDC-STM-000008970/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Missouri lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.841672897 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 25.748802185 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 26.010534286 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 26.727134705 lineage/clade name B.1.2 host_race White BioSampleModel Pathogen.cl SRS8491214 SAMN18351124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/CA-CDC-STM-000008978/2021 GISAID_virus_name hCoV-19/USA/CA-CDC-STM-000008978/2021 collected_by Helix collection_date 2021-02-04 geo_loc_name USA: California lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 33.010444641 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 15.544066429 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 15.90102005 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 16.772733688 lineage/clade name B.1.429 host_race Latino BioSampleModel Pathogen.cl SRS8491215 SAMN18351125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 isolate SARS-CoV-2/Human/USA/FL-CDC-STM-000008923/2021 GISAID_virus_name hCoV-19/USA/FL-CDC-STM-000008923/2021 collected_by Helix collection_date 2021-02-03 geo_loc_name USA: Florida lat_lon missing sequenced_by Illumina isolation_source nasal host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_anatomical_part Nasal collection_device Swabs collection_method Swabs diagnostic_gene_name_1 ms2 diagnostic_pcr_protocol_1 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_1 27.477952957 diagnostic_gene_name_2 n gene diagnostic_pcr_protocol_2 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_2 22.231256485 diagnostic_gene_name_3 orf1ab diagnostic_pcr_protocol_3 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_3 22.800458908 diagnostic_gene_name_4 s gene diagnostic_pcr_protocol_4 ThermoFisher Taqpath Assay diagnostic_pcr_Ct_value_4 23.013275146 lineage/clade name B.1.2 host_race Unspecified BioSampleModel Pathogen.cl