SRR14580533 H_KA-115225-0927533_1_ewgs.bam H_KA-115225-0927533-lig2-lib1: H_KA-115225-0927533_1_ewgs assembly GRCh37 SRR14580534 H_KA-115225-115225_Relapse_ewgs.bam H_KA-115225-1302264-lig1-lib1: H_KA-115225-115225_Relapse_ewgs assembly GRCh37 SRR14580535 H_KA-115225-1300302P_1_ewgs.bam H_KA-115225-1300302P_1-lg1-lib1: H_KA-115225-1300302P_1_ewgs assembly GRCh37 SRR14580536 H_KA-115225-1302264_deep_exome.bam H_KA-115225-1302264-lg1-lib1: H_KA-115225-1302264_deep_exome assembly GRCh37 SRR14580537 H_KA-548327-1302267_ewgs.bam H_KA-548327-1302267-lig1-lib2: H_KA-548327-1302267_ewgs assembly GRCh37 SRR14580538 H_KA-758168-912815_1_ewgs.bam H_KA-758168-912815_1-lg1-lib1: H_KA-758168-912815_1_ewgs assembly GRCh37 SRR14580539 H_KA-758168-S.22139_1_ewgs.bam H_KA-758168-S.22139_1-lg1-lib1: H_KA-758168-S.22139_1_ewgs assembly GRCh37 SRR14580540 H_KA-823477-1411314_ewgs.bam H_KA-823477-1411314-lg1-lib1: H_KA-823477-1411314_ewgs assembly GRCh37 SRR14580541 H_KA-823477-1411320_ewgs.bam H_KA-823477-1411320-lg2-lib1: H_KA-823477-1411320_ewgs assembly GRCh37 SRR14580542 H_KA-823477-1414489_ewgs.bam H_KA-823477-1414489-lg2-lib1: H_KA-823477-1414489_ewgs assembly GRCh37 SRR14580543 H_KA-869586-M1510752_1_ewgs.bam H_KA-869586-M1510752_1-lg1-lib1: H_KA-869586-M1510752_1_ewgs assembly GRCh37 SRR14580545 H_KA-627523-627523_dx_BM_lib1.bam H_KA-627523-627523_dx_BM_lib1: H_KA-627523-627523_dx_BM_lib1 assembly GRCh38 SRR14580546 H_KA-854862-854862_dx_BM_lib1.bam H_KA-854862-854862_dx_BM_lib1: H_KA-854862-854862_dx_BM_lib1 assembly GRCh38 SRR14580547 452198_P_scRNA.bam 452198_P_scRNA-lib1: 452198_P_scRNA assembly GRCh38 SRR14580548 452198_R_scRNA.bam 452198_R_scRNA-lib1: 452198_R_scRNA assembly GRCh38 SRR14580549 508084_P_1_scRNA.bam 508084_P_1_scRNA-lib1: 508084_P_1_scRNA assembly GRCh38 SRR14580550 508084_P_2_scRNA.bam 508084_P_2_scRNA-lib1: 508084_P_2_scRNA assembly GRCh38 SRR14580551 508084_R_1_scRNA.bam 508084_R_1_scRNA-lib1: 508084_R_1_scRNA assembly GRCh38 SRR14580552 508084_R_2_scRNA.bam 508084_R_2_scRNA-lib1: 508084_R_2_scRNA assembly GRCh38 SRR14580553 H_KA-115225-0933335_13_1_P_1_scRNA.bam H_KA-115225-0933335_13_1_P_1_scRNA-lib1: H_KA-115225-0933335_13_1_P_1_scRNA loader fastq-load.py SRR14580554 H_KA-115225-0933335_13_1_P_2_scRNA.bam H_KA-115225-0933335_13_1_P_2_scRNA-lib1: H_KA-115225-0933335_13_1_P_2_scRNA loader fastq-load.py SRR14580563 H_KA-823477-1411993_3_1_R_1_scRNA.bam H_KA-823477-1411993_3_1_R_1_scRNA-lib1: H_KA-823477-1411993_3_1_R_1_scRNA loader fastq-load.py SRR14580564 H_KA-823477-1411993_3_1_R_2_scRNA.bam H_KA-823477-1411993_3_1_R_2_scRNA-lib1: H_KA-823477-1411993_3_1_R_2_scRNA loader fastq-load.py SRR14580565 H_KA-869586-869586_dx_P_1_scRNA.bam H_KA-869586-869586_dx_P_1_scRNA-lib1: H_KA-869586-869586_dx_P_1_scRNA assembly GRCh38 SRR14580566 H_KA-869586-869586_dx_P_2_scRNA.bam H_KA-869586-869586_dx_P_2_scRNA-lib1: H_KA-869586-869586_dx_P_2_scRNA assembly GRCh38 SRR14580567 H_KA-869586-869586_rel_2_R_2_scRNA.bam H_KA-869586-869586_rel_2_R_2_scRNA-lib1: H_KA-869586-869586_rel_2_R_2_scRNA assembly GRCh38 SRR14580568 H_KA-02-87-BulkRNA_02-87_dx_BM.bam H_KA-02-87-BulkRNA_02-87_dx_BM: H_KA-02-87-BulkRNA_02-87_dx_BM assembly GRCh38 SRR14580569 H_KA-104851-BulkRNA_104851_dx_BM.bam H_KA-104851-BulkRNA_104851_dx_BM: H_KA-104851-BulkRNA_104851_dx_BM assembly GRCh38 SRR14580570 H_KA-115225-Bulk_RNA_115225_dx.bam H_KA-115225-Bulk_RNA_115225_dx: H_KA-115225-Bulk_RNA_115225_dx assembly GRCh38 SRR14580610 H_KA-220882-1132566_4_ewgs.bam H_KA-220882-1132566_4-lib1: H_KA-220882-1132566_4_ewgs assembly GRCh37 SRR14580611 H_KA-220882-1218770_4_ewgs.bam H_KA-220882-1218770_4-lib1: H_KA-220882-1218770_4_ewgs assembly GRCh37 SRR14580612 H_KA-220882-220882_CD3pos_wgs.bam H_KA-220882-220882_CD3+lib1: H_KA-220882-220882_CD3pos_wgs assembly GRCh37 SRR15442007 H_KA-823477-1411993_3_1_R_1_scRNA H_KA-823477-1411993_3_1_R_1_scRNA-lib1: H_KA-823477-1411993_3_1_R_1_scRNA loader fastq-load.py SRR15442008 H_KA-823477-1411993_3_1_R_2_scRNA H_KA-823477-1411993_3_1_R_2_scRNA-lib1: H_KA-823477-1411993_3_1_R_2_scRNA loader fastq-load.py SRR14580555 H_KA-115225-1122208_2_1_R_1_scRNA.bam H_KA-115225-1122208_2_1_R_1_scRNA-lib1: H_KA-115225-1122208_2_1_R_1_scRNA loader fastq-load.py SRR14580556 H_KA-115225-1122208_2_1_R_2_scRNA.bam H_KA-115225-1122208_2_1_R_2_scRNA-lib1: H_KA-115225-1122208_2_1_R_2_scRNA loader fastq-load.py SRR14580557 H_KA-220882-1132517_12_P_1_scRNA.bam H_KA-220882-1132517_12_P_1_scRNA-lib1: H_KA-220882-1132517_12_P_1_scRNA assembly GRCh38 SRR14580558 H_KA-220882-1132517_12_P_2_scRNA.bam H_KA-220882-1132517_12_P_2_scRNA-lib1: H_KA-220882-1132517_12_P_2_scRNA assembly GRCh38 SRR14580559 H_KA-220882-1218768_4_R_1_scRNA.bam H_KA-220882-1218768_4_R_1_scRNA-lib1: H_KA-220882-1218768_4_R_1_scRNA assembly GRCh38 SRR14580560 H_KA-220882-1218768_4_R_2_scRNA.bam H_KA-220882-1218768_4_R_2_scRNA-lib1: H_KA-220882-1218768_4_R_2_scRNA loader fastq-load.py SRR14580561 H_KA-823477-1324706_3_1_P_1_scRNA.bam H_KA-823477-1324706_3_1_P_1_scRNA-lib1: H_KA-823477-1324706_3_1_P_1_scRNA loader fastq-load.py SRR14580562 H_KA-823477-1324706_3_1_P_2_scRNA.bam H_KA-823477-1324706_3_1_P_2_scRNA-lib1: H_KA-823477-1324706_3_1_P_2_scRNA assembly GRCh38 SRR14580571 H_KA-115225-Total_RNA_seq_115225_Day_0.bam H_KA-115225-Total_RNA_seq_115225_Day_0: H_KA-115225-Total_RNA_seq_115225_Day_0 assembly GRCh38 SRR14580572 H_KA-115225-Total_RNA_seq_115225_Relapse.bam H_KA-115225-Total_RNA_seq_115225_Relapse: H_KA-115225-Total_RNA_seq_115225_Relapse assembly GRCh38 SRR14580573 H_KA-126620-Bulk_RNA_126620_dx.bam H_KA-126620-Bulk_RNA_126620_dx: H_KA-126620-Bulk_RNA_126620_dx assembly GRCh38 SRR14580574 H_KA-141273-Bulk_RNA_141273_dx_BM.bam H_KA-141273-Bulk_RNA_141273_dx_BM: H_KA-141273-Bulk_RNA_141273_dx_BM assembly GRCh38 SRR14580575 H_KA-150288-Bulk_RNA_150288_dx.bam H_KA-150288-Bulk_RNA_150288_dx: H_KA-150288-Bulk_RNA_150288_dx assembly GRCh38 SRR14580576 H_KA-161510-BulkRNA_161510_dx_BM.bam H_KA-161510-BulkRNA_161510_dx_BM: H_KA-161510-BulkRNA_161510_dx_BM assembly GRCh38 SRR14580577 H_KA-186706-BulkRNA_186706_dx_BM.bam H_KA-186706-BulkRNA_186706_dx_BM: H_KA-186706-BulkRNA_186706_dx_BM assembly GRCh38 SRR14580578 H_KA-208027-BulkRNA_208027_dx_BM.bam H_KA-208027-BulkRNA_208027_dx_BM: H_KA-208027-BulkRNA_208027_dx_BM assembly GRCh38 SRR14580579 H_KA-286032-Bulk_RNA_286032_dx.bam H_KA-286032-Bulk_RNA_286032_dx: H_KA-286032-Bulk_RNA_286032_dx assembly GRCh38 SRR14580580 H_KA-296361-BulkRNA_296361_dx_BM.bam H_KA-296361-BulkRNA_296361_dx_BM: H_KA-296361-BulkRNA_296361_dx_BM assembly GRCh38 SRR14580581 H_KA-311636-Bulk_RNA_311636_dx_BM.bam H_KA-311636-Bulk_RNA_311636_dx_BM: H_KA-311636-Bulk_RNA_311636_dx_BM assembly GRCh38 SRR14580582 H_KA-312340-Bulk_RNA_312340_dx_BM.bam 312340: H_KA-312340-Bulk_RNA_312340_dx_BM assembly GRCh38 SRR14580583 H_KA-318748-Bulk_RNA_318748_dx_BM.bam H_KA-318748-Bulk_RNA_318748_dx_BM: H_KA-318748-Bulk_RNA_318748_dx_BM assembly GRCh38 SRR14580584 H_KA-329614-BulkRNA_329614_dx_BM.bam H_KA-329614-BulkRNA_329614_dx_BM: H_KA-329614-BulkRNA_329614_dx_BM assembly GRCh38 SRR14580585 H_KA-332131-BulkRNA_332131_dx_BM.bam H_KA-332131-BulkRNA_332131_dx_BM: H_KA-332131-BulkRNA_332131_dx_BM assembly GRCh38 SRR14580586 H_KA-334228-Bulk_RNA_334228_dx.bam H_KA-334228-Bulk_RNA_334228_dx: H_KA-334228-Bulk_RNA_334228_dx assembly GRCh38 SRR14580587 H_KA-375182-BulkRNA_375182_dx_BM.bam H_KA-375182-BulkRNA_375182_dx_BM: H_KA-375182-BulkRNA_375182_dx_BM assembly GRCh38 SRR14580588 H_KA-412761-Bulk_RNA_412761_dx.bam H_KA-412761-Bulk_RNA_412761_dx: H_KA-412761-Bulk_RNA_412761_dx assembly GRCh38 SRR14580589 H_KA-418499-Bulk_RNA_418499_dx_BM.bam H_KA-418499-Bulk_RNA_418499_dx_BM: H_KA-418499-Bulk_RNA_418499_dx_BM assembly GRCh38 SRR14580590 H_KA-433325-BulkRNA_433325_dx_BM.bam H_KA-433325-BulkRNA_433325_dx_BM: H_KA-433325-BulkRNA_433325_dx_BM assembly GRCh38 SRR14580591 H_KA-452198-Bulk_RNA_452198_dx_BM.bam H_KA-452198-Bulk_RNA_452198_dx_BM: H_KA-452198-Bulk_RNA_452198_dx_BM assembly GRCh38 SRR14580592 H_KA-508084-Total_RNA_508084_Rel.bam H_KA-508084-Total_RNA_508084_Rel: H_KA-508084-Total_RNA_508084_Rel assembly GRCh38 SRR14580593 H_KA-509754-BulkRNA_509754_dx_BM.bam H_KA-509754-BulkRNA_509754_dx_BM: H_KA-509754-BulkRNA_509754_dx_BM assembly GRCh38 SRR14580594 H_KA-606061-BulkRNA_606061_dx_BM.bam H_KA-606061-BulkRNA_606061_dx_BM: H_KA-606061-BulkRNA_606061_dx_BM assembly GRCh38 SRR14580595 H_KA-613389-BulkRNA_613389_dx_BM.bam H_KA-613389-BulkRNA_613389_dx_BM_lib1: H_KA-613389-BulkRNA_613389_dx_BM assembly GRCh38 SRR14580596 H_KA-635258-Bulk_RNA_635258_dx_BM.bam H_KA-635258-Bulk_RNA_635258_dx_BM: H_KA-635258-Bulk_RNA_635258_dx_BM assembly GRCh38 SRR14580597 H_KA-721214-Bulk_RNA_721214_dx.bam H_KA-721214-Bulk_RNA_721214_dx: H_KA-721214-Bulk_RNA_721214_dx assembly GRCh38 SRR14580598 H_KA-727185-BulkRNA_727185_dx_BM.bam H_KA-727185-BulkRNA_727185_dx_BM_lib1: H_KA-727185-BulkRNA_727185_dx_BM assembly GRCh38 SRR14580599 H_KA-807970-Bulk_RNA_807970_dx.bam H_KA-807970-Bulk_RNA_807970_dx: H_KA-807970-Bulk_RNA_807970_dx assembly GRCh38 SRR14580600 H_KA-823477-Total_RNA_seq_823477_Relapse.bam H_KA-823477-Total_RNA_seq_823477_Relapse: H_KA-823477-Total_RNA_seq_823477_Relapse assembly GRCh38 SRR14580601 H_KA-831711-Bulk_RNA_831711_dx_BM.bam H_KA-831711-Bulk_RNA_831711_dx_BM: H_KA-831711-Bulk_RNA_831711_dx_BM assembly GRCh38 SRR14580602 H_KA-868442-Bulk_RNA_868442_dx_BM.bam H_KA-868442-Bulk_RNA_868442_dx_BM: H_KA-868442-Bulk_RNA_868442_dx_BM assembly GRCh38 SRR14580603 H_KA-869586-Total_RNA_869586_relapse.bam H_KA-869586-Total_RNA_869586_relapse: H_KA-869586-Total_RNA_869586_relapse assembly GRCh38 SRR14580604 H_KA-875663-Bulk_RNA_875663_dx_BM.bam H_KA-875663-Bulk_RNA_875663_dx_BM: H_KA-875663-Bulk_RNA_875663_dx_BM assembly GRCh38 SRR14580605 H_KA-894912-894912_TBRS-3_PB_bulkRNA.bam H_KA-894912-894912_TBRS-3_PB: H_KA-894912-894912_TBRS-3_PB_bulkRNA assembly GRCh38 SRR14580606 H_KA-906708-Bulk_RNA_906708_dx_BM.bam H_KA-906708-Bulk_RNA_906708_dx_BM: H_KA-906708-Bulk_RNA_906708_dx_BM assembly GRCh38 SRR14580607 H_KA-916462-Bulk_RNA_916462_dx_BM.bam H_KA-916462-Bulk_RNA_916462_dx_BM: H_KA-916462-Bulk_RNA_916462_dx_BM assembly GRCh38 SRR14580608 H_KA-976838-Bulk_RNA_976838_dx.bam H_KA-976838-Bulk_RNA_976838_dx: H_KA-976838-Bulk_RNA_976838_dx assembly GRCh38 SRR14580609 H_JM-807970-807970.bam H_JM-807970-807970-lib1: H_JM-807970-807970 loader fastq-load.py SRR14580614 H_KA-220882-2nd_banking_scRNA.bam H_KA-220882-2nd_banking-lib1: H_KA-220882-2nd_banking_scRNA assembly GRCh38 SRR14580616 H_KA-220882-3rd_banking_scRNA.bam H_KA-220882-3rd_banking-lib1: H_KA-220882-3rd_banking_scRNA assembly GRCh38 SRR14580618 H_KA-220882-5th_banking_scRNA.bam H_KA-220882-5th_banking-lib1: H_KA-220882-5th_banking_scRNA assembly GRCh38 SRR14580620 H_KA-332131-scRNA_322131_Poor_Resp.bam H_KA-332131-scRNA_322131_Poor_Resp-lib1: H_KA-332131-scRNA_322131_Poor_Resp assembly GRCh38 SRR14580621 H_KA-452198-M1502033_3_wgs.bam H_KA-452198-M1502033_3-lib1: H_KA-452198-M1502033_3_wgs assembly GRCh37 SRR14580622 H_KA-508084-M1509522_1_ewgs.bam H_KA-508084-M1509522_1-lib1: H_KA-508084-M1509522_1_ewgs assembly GRCh37 SRR14580623 H_KA-624400_Skin-Swift_WGBS_624400_Skin.cram H_KA-624400_Skin-Swift_WGBS_624400_Skin: H_KA-624400_Skin-Swift_WGBS_624400_Skin assembly GRCh38 SRR14580624 H_KA-758168-1003495_1_ewgs.bam H_KA-758168-1003495_1-lib1: H_KA-758168-1003495_1_ewgs assembly GRCh37 SRR14580625 H_KA-823477-823477_Relapse_2_wgs.bam H_KA-823477-823477_Relapse_2-lib1: H_KA-823477-823477_Relapse_2_wgs assembly GRCh37 SRR14580626 H_KA-868442-scRNA_868442_Good_Resp.bam H_KA-868442-scRNA_868442_Good_Resp-lib1: H_KA-868442-scRNA_868442_Good_Resp assembly GRCh38 SRR14580627 H_KA-869586-1213339_1_ewgs.bam H_KA-869586-1213339_1-lib1: H_KA-869586-1213339_1_ewgs assembly GRCh37 SRR14580628 H_KA-869586-S.16508_ewgs.bam H_KA-869586-S.16508-lib1: H_KA-869586-S.16508_ewgs assembly GRCh37 SRR14580629 H_KA-869922-scRNA_869922_Poor_Resp.bam H_KA-869922-scRNA_869922_Poor_Resp-lib1: H_KA-869922-scRNA_869922_Poor_Resp assembly GRCh38 SRR14580630 H_KA-875663-scRNA_875663_Poor_Resp.bam H_KA-875663-scRNA_875663_Poor_Resp-lib1: H_KA-875663-scRNA_875663_Poor_Resp assembly GRCh38 SRR14580631 H_KA-894912-BM_slide_WGBS.cram H_KA-894912-BM_slide: H_KA-894912-BM_slide_WGBS assembly GRCh38 SRR14580633 H_KA-916462-scRNA_916462_Good_Resp.bam H_KA-916462-scRNA_916462_Good_Resp-lib1: H_KA-916462-scRNA_916462_Good_Resp assembly GRCh38 SRR14580634 H_KA-976838-976838_dx_BM.bam H_KA-854862-854862_dx_BM-lib1: H_KA-976838-976838_dx_BM assembly GRCh38 SRR14580635 H_KA-978897_Skin-Swift_WGBS_978897_Skin.cram H_KA-978897_Skin-Swift_WGBS_978897_Skin: H_KA-978897_Skin-Swift_WGBS_978897_Skin assembly GRCh38 SRR14580636 TWEJ-ND050119-ND050119_sytox_neg_1.prod-cwl.10x_scRNA.bam TWEJ-ND050119-ND050119_sytox_neg_1-lib1: TWEJ-ND050119-ND050119_sytox_neg_1.prod-cwl.10x_scRNA assembly GRCh38 SRR14580637 TWEJ-ND050119-ND050119_sytox_neg_CD34_pos_1.prod-cwl.10x_scRNA.bam TWEJ-ND050119-ND050119_sytox_neg_CD34_pos_1-lib1: TWEJ-ND050119-ND050119_sytox_neg_CD34_pos_1.prod-cwl.10x_scRNA assembly GRCh38 SRR14580638 TWEJ-ND050819-ND050819_sytox_neg_1.prod-cwl.10x_scRNA.bam TWEJ-ND050819-ND050819_sytox_neg_1-lib1: TWEJ-ND050819-ND050819_sytox_neg_1.prod-cwl.10x_scRNA assembly GRCh38 SRR14580639 TWEJ-ND050819-ND050819_sytox_neg_CD34_pos_1.prod-cwl.10x_scRNA.bam TWEJ-ND050819-ND050819_sytox_neg_CD34_pos_1-lib1: TWEJ-ND050819-ND050819_sytox_neg_CD34_pos_1.prod-cwl.10x_scRNA assembly GRCh38 SRR14580640 TWGB-624400_epi-WGBS_624400_5th_bnk_skin.cram TWGB-624400_epi-WGBS_624400_5th_bnk_skin: TWGB-624400_epi-WGBS_624400_5th_bnk_skin assembly GRCh38 SRR14580641 TWGB-978897_epi-WGBS_978897_2nd_bnk_skin.cram TWGB-978897_epi-WGBS_978897_2nd_bnk_skin: TWGB-978897_epi-WGBS_978897_2nd_bnk_skin assembly GRCh38 SRR14580642 TWGB-NM031615A_PB-Swift_WGBS_4_NM12.cram TWGB-NM031615A_PB-Swift_WGBS_4_NM12: TWGB-NM031615A_PB-Swift_WGBS_4_NM12 assembly GRCh38 SRR14580643 TWGB-NM031615B_PB-Swift_WGBS_5_NM13.cram TWGB-NM031615B_PB-Swift_WGBS_5_NM13: TWGB-NM031615B_PB-Swift_WGBS_5_NM13 assembly GRCh38 SRR14580644 TWGB-NM031615C_PB-Swift_WGBS_6_NM14.cram TWGB-NM031615C_PB-Swift_WGBS_6_NM14: TWGB-NM031615C_PB-Swift_WGBS_6_NM14 assembly GRCh38 SRR14580645 TWGB-NM073115_PB-Swift_WGBS_2_NM4g.cram TWGB-NM073115_PB-Swift_WGBS_2_NM4g: TWGB-NM073115_PB-Swift_WGBS_2_NM4g assembly GRCh38 SRR14580646 TWGB-NM080715_PB-Swift_WGBS_8_NM16.cram TWGB-NM080715_PB-Swift_WGBS_8_NM16: TWGB-NM080715_PB-Swift_WGBS_8_NM16 assembly GRCh38 SRR14580647 TWGB-NM081015_PB-Swift_WGBS_7_NM15.cram TWGB-NM081015_PB-Swift_WGBS_7_NM15: TWGB-NM081015_PB-Swift_WGBS_7_NM15 assembly GRCh38 SRR14580648 TWGB-NM111815_PB-Swift_WGBS_9_NM17.cram TWGB-NM111815_PB-Swift_WGBS_9_NM17: TWGB-NM111815_PB-Swift_WGBS_9_NM17 assembly GRCh38 SRR14580649 TWGB-NM121514_PB-Swift_WGBS_3_NM10.cram TWGB-NM121514_PB-Swift_WGBS_3_NM10: TWGB-NM121514_PB-Swift_WGBS_3_NM10 assembly GRCh38 SRR14580650 TWGB-NM12214_PB-Swift_WGBS_1_NM1g.cram TWGB-NM12214_PB-Swift_WGBS_1_NM1g: TWGB-NM12214_PB-Swift_WGBS_1_NM1g assembly GRCh38 SRR15442010 H_KA-318748-scRNA_318748_Good_Resp H_KA-318748-scRNA_318748_Good_Resp-lib1: H_KA-318748-scRNA_318748_Good_Resp loader fastq-load.py