<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX11247961" alias="X7091">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX11247961</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB9916966">X7091</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Whole genome sequence of Mycobacterium gordonae subsp. camsnse subsp. nov isolated from a skin infection</TITLE>
    <STUDY_REF accession="SRP325952">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP325952</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA703698</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The strain X7091 genome was sequenced using a PacBio RS II platform and Illumina HiSeq 4000 platform at the Beijing Genomics Institute(BGI, Shenzhen, China). Four SMRT cells Zero-Mode Waveguide arrays of sequencing, were used by the PacBio platform to generate the subreads set.PacBio subreads (length &lt; 1 kb) were removed. The program Pbdagcon was used for selfcorrection. Draft genomic unitigs, which are uncontested groups of fragments, were assembled using the Celera Assembler against a highquality corrected circular consensus sequence subreads set. To improve the accuracy of the genome sequences, GATK and SOAP tool packages were used to make single-base corrections.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS9293871">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS9293871</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|mym_pm">Mycobacterium gordonae subsp. camsnse subsp. nov X7091</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>X7091</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS II</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
