<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE180063" accession="SRP328272">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP328272</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA746455</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE180063</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Macrophages govern antiviral responses in human lung tissues protected from SARS-CoV-2 infection</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>The majority of SARS-CoV-2 infections among healthy individuals result in asymptomatic to mild disease. However, the immunological mechanisms defining effective lung tissue protection from SARS-CoV-2 infection remain elusive. Unlike mice solely engrafted with human fetal lung xenograft (fLX), mice co-engrafted with fLX and a myeloid-enhanced human immune system (HNFL mice) are resistant to SARS-CoV-2 infection, severe inflammation, and histopathology. Effective control of viral infection in HNFL mice associated with significant macrophage infiltration, and the induction of a potent macrophage-mediated interferon response. The strong upregulation of the USP18-ISG15 axis, a negative regulator of IFN responses, by macrophages was unique to HNFL mice and represented a prominent correlate of reduced inflammation and histopathology. Altogether, our work shed lights on unique cellular and molecular correlate of lung tissue protection during SARS-CoV-2 infection, and underscores macrophage IFN responses as prime targets for developing immunotherapies against coronavirus respiratory diseases. Overall design: 12 human fetal lung xenografts implanted in mice: 4- Naïve (non-inoculated in non-infected mice) human fetal lung xenografts from NRG-L mice. 3-human fetal lung xenografts from NRG-Flk2-/- mice co-engrafted with a human immune system at 2-days and 7-days post infection using 1x10^6 PFU SARS-CoV-2 WA-Isolate. 3 Naïve (non-infected graft in non-infected mice) human fetal lung xenografts from NRG-Flk2-/- mice co-engrafted with a human system were sequenced as a control.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE180063</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>35421379</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
