SRS9544934 SAMN20328669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09233425/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.387 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.046 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.855 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.341 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544933 SAMN20328573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09230044/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.801 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.317 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.922 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544932 SAMN20328602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09229948/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.232 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.648 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.584 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544931 SAMN20328603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09228955/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.249 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.644 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.651 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544930 SAMN20328951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09227554/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.736 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.176 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.089 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.859 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544929 SAMN20328952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09227077/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.024 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.214 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.379 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544928 SAMN20328953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09226868/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.625 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.474 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.801 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.94 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544927 SAMN20328954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09226346/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.174 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.382 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.256 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544926 SAMN20328955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09225652/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.335 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.658 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.87 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544925 SAMN20328578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09190568/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.851 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.758 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.184 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.53 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544924 SAMN20328618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09176338/2021 collected_by Mako Medical collection_date 2021-06-10 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544923 SAMN20328619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09176172/2021 collected_by Mako Medical collection_date 2021-06-08 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544922 SAMN20328956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09151623/2021 collected_by Mako Medical collection_date 2021-06-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.666 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.994 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.253 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.481 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544943 SAMN20328944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09235410/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.306 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.332 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.243 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544942 SAMN20328945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09235351/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.759 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.434 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.35 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544941 SAMN20328946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09235268/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.202 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.135 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.729 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544940 SAMN20328667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09234896/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.364 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.815 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.048 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544939 SAMN20328947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09234815/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.145 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.976 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544938 SAMN20328948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09234774/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.282 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.117 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.666 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.439 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544937 SAMN20328949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09234741/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.635 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.385 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.002 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544966 SAMN20328572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09239182/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.041 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.513 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544967 SAMN20328922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239391/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.704 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.206 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.047 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.257 lineage/clade name B.1.621.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544968 SAMN20328921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239932/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.573 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.389 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.243 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544969 SAMN20328920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239999/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.373 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.897 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.878 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544970 SAMN20328919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09240019/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.966 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.094 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.419 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544971 SAMN20328918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09240050/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.756 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.767 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.968 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544972 SAMN20328597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09240061/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race I collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.885 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.758 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.858 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544973 SAMN20328917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09240103/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.029 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.288 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.368 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544974 SAMN20328916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09240434/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.833 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.97 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.063 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.364 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544975 SAMN20328915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09240956/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.266 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.697 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.591 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544976 SAMN20328914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09240983/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.903 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.508 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.156 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544977 SAMN20328913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09241030/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.012 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.137 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.307 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544978 SAMN20328912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09241099/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.528 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.352 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.513 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544979 SAMN20328911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09241269/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.611 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.981 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544980 SAMN20328910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09241292/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.014 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.976 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.745 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.596 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544981 SAMN20328571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09241743/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.776 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.741 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.943 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.216 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544982 SAMN20328570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09241756/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.099 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.481 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.437 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544983 SAMN20328596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09242443/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.072 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.177 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.163 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544984 SAMN20328595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09242477/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.176 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.422 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.137 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544985 SAMN20328666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09242759/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.771 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.983 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.607 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544986 SAMN20328909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244138/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.843 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.375 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.309 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.02 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544987 SAMN20328601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09244326/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.428 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.378 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.593 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.102 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544988 SAMN20328908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244424/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.713 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.821 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544989 SAMN20328907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244647/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.934 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.567 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.163 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544990 SAMN20328906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244702/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.123 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.294 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544935 SAMN20328950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09234513/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.671 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.454 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.329 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544936 SAMN20328668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09234715/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.331 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.446 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.536 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544944 SAMN20328943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09235630/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.887 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.116 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544945 SAMN20328942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09235915/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.053 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.816 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544946 SAMN20328941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09235973/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.652 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.591 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.042 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544947 SAMN20328940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09236194/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.212 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.612 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.157 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544948 SAMN20328939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09236253/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.066 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.184 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.813 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544949 SAMN20328938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09236640/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.253 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.007 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.087 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544950 SAMN20328937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09237114/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.874 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.074 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.325 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544951 SAMN20328936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09237263/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.897 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.17 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.943 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.824 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544952 SAMN20328935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09237280/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.633 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.164 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.709 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544953 SAMN20328934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09237937/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.485 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.315 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544954 SAMN20328933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09237980/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.569 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.821 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.211 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.78 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544955 SAMN20328932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09238034/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.487 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.453 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.804 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544956 SAMN20328931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09238115/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.607 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.752 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.976 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544957 SAMN20328930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09238336/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.994 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.251 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544958 SAMN20328929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09238354/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.434 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.158 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.969 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.261 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544959 SAMN20328577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09238682/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.748 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.039 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.514 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544960 SAMN20328928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09238687/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.175 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.797 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.448 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544961 SAMN20328927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239029/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.852 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.698 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544962 SAMN20328926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239161/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.521 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.555 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.769 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544963 SAMN20328925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239162/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.873 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.259 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.506 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544964 SAMN20328924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239163/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.625 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.313 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544965 SAMN20328923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09239172/2021 collected_by Mako Medical collection_date 2021-06-24 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.799 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.621 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.991 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544991 SAMN20328905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244871/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.753 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.317 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544992 SAMN20328904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244874/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.113 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.966 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.236 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544993 SAMN20328903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244962/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.29 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.596 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.396 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544994 SAMN20328902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09244975/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.392 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.974 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.812 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544995 SAMN20328900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245003/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.596 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.487 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544996 SAMN20328901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245001/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.157 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.081 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.425 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.38 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544997 SAMN20328664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09245087/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.78 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.084 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.08 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544998 SAMN20328665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09245040/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.16 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.321 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.403 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9544999 SAMN20328576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09245098/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.573 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.622 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.777 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.001 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545000 SAMN20328663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09245113/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.416 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.317 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.364 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545001 SAMN20328899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245203/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.479 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.875 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.571 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545002 SAMN20328898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245322/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.81 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.701 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.695 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545003 SAMN20328897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245594/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.783 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.375 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.889 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545004 SAMN20328894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245940/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.671 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.812 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.813 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545005 SAMN20328895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245914/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.796 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.474 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.057 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 19.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545006 SAMN20328893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245959/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.01 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.469 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.522 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.62 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545007 SAMN20328892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246007/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.769 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.189 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.966 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545008 SAMN20328891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246287/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.567 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.569 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.721 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545009 SAMN20328890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246305/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.633 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.757 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545010 SAMN20328889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246355/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.489 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.429 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.501 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.466 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545011 SAMN20328662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09246370/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.052 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.421 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.988 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545012 SAMN20328888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246495/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.157 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.537 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.726 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545013 SAMN20328887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246497/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.377 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.19 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.291 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545014 SAMN20328886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09246935/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.058 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.871 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545015 SAMN20328661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09247087/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.483 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.293 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.005 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.858 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545016 SAMN20328885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09247418/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.374 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.78 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.635 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.709 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545017 SAMN20328883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248071/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race N collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.991 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.552 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.927 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545018 SAMN20328884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09247435/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.691 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.246 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.963 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.991 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545019 SAMN20328882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248164/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.867 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.069 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545020 SAMN20328881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248516/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.483 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.046 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.735 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545021 SAMN20328880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248592/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.762 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.768 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.098 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.937 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545022 SAMN20328879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248757/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.948 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.807 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545023 SAMN20328878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248797/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.098 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.117 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.568 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545024 SAMN20328877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248903/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.896 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.509 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.433 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545025 SAMN20328876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09248965/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.176 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.58 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.702 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545026 SAMN20328569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09249471/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.27 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.433 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545027 SAMN20328594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09249713/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.688 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.77 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.665 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545028 SAMN20328875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250022/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.03 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.339 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.273 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545029 SAMN20328873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250040/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.093 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.464 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545030 SAMN20328874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250028/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.425 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.242 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.576 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.264 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545031 SAMN20328872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250112/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.219 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.627 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.279 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545032 SAMN20328871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250132/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.253 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.176 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.65 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545033 SAMN20328870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250158/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.367 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.154 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.564 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.67 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545034 SAMN20328869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250307/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.829 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.599 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.983 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545035 SAMN20328868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250502/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.595 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.846 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.888 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545036 SAMN20328867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250513/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.36 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.201 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545037 SAMN20328866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250516/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.418 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.743 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545038 SAMN20328865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250563/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.649 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.231 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.664 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545039 SAMN20328864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250579/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.358 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.804 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.297 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545040 SAMN20328593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09250699/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.567 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.329 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.557 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.645 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545041 SAMN20328863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250730/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.476 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.425 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.497 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545042 SAMN20328862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250762/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.152 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.254 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.065 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545043 SAMN20328861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250792/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.193 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.497 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545044 SAMN20328860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250837/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.286 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.035 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.559 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545045 SAMN20328859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250848/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.235 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.414 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545046 SAMN20328858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250850/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.304 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.5 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545047 SAMN20328857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250853/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.749 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.109 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.909 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545048 SAMN20328856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250883/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.222 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.528 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545049 SAMN20328855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250890/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.401 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.106 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.65 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545050 SAMN20328854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09250903/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.24 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.218 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.384 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545051 SAMN20328853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251125/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.805 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.169 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.761 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545052 SAMN20328852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251131/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.168 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.801 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.45 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545053 SAMN20328851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251170/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.949 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.088 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545054 SAMN20328850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251246/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.249 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.29 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.177 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545055 SAMN20328849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251253/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.889 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.217 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.985 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545056 SAMN20328848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251333/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.778 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.904 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545057 SAMN20328847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251353/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.123 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.347 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545058 SAMN20328560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TX-CDC-MMB09251396/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.788 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.681 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.969 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545059 SAMN20328846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251625/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.037 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.965 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.042 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545060 SAMN20328574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OK-CDC-MMB09251941/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.468 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.439 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545061 SAMN20328845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09251996/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.082 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.981 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.473 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545062 SAMN20328844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252327/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.775 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.376 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.367 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545063 SAMN20328843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252337/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.312 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.338 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.484 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545064 SAMN20328841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252341/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.285 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.229 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.473 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.353 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545065 SAMN20328842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252340/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.668 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.036 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.752 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545066 SAMN20328840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252398/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.266 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.929 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.446 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545067 SAMN20328839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252440/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.867 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.659 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.117 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545068 SAMN20328592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09252729/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.569 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.806 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.749 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545069 SAMN20328838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252740/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.654 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.283 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.389 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545070 SAMN20328837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252773/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.16 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.29 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.628 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545071 SAMN20328836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252828/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.517 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.644 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545072 SAMN20328835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252938/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.599 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.279 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.456 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545073 SAMN20328834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252945/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.162 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.96 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.084 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545074 SAMN20328832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09253069/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.028 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.013 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.296 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545075 SAMN20328833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09252949/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.221 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.978 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.554 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545076 SAMN20328831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09253073/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.272 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.828 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.395 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.366 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545077 SAMN20328830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09253115/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.246 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.604 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.397 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545078 SAMN20328591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09253177/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.125 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.165 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.52 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545079 SAMN20328829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09253373/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.569 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.988 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545080 SAMN20328828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09253405/2021 collected_by Mako Medical collection_date 2021-06-27 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.601 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.457 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.795 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.24 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545081 SAMN20328660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09255173/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.203 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.288 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545082 SAMN20328827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09255901/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.099 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.973 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.168 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545083 SAMN20328826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09255980/2021 collected_by Mako Medical collection_date 2021-06-26 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.417 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.999 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.89 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545084 SAMN20328825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09256427/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.242 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.357 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545085 SAMN20328568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09256491/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.588 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.974 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.879 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545086 SAMN20328659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09256504/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.895 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.765 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545087 SAMN20328824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09256571/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.259 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.985 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.428 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545088 SAMN20328657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09256998/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.57 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.061 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.475 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545089 SAMN20328658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09256713/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.506 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 10.363 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 9.557 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545090 SAMN20328600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09257175/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.251 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.49 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.407 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.065 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545091 SAMN20328656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09257001/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.695 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.579 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.622 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545092 SAMN20328822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09257601/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.115 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.467 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.503 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545093 SAMN20328823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09257583/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.727 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.76 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.816 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545094 SAMN20328821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09257617/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.493 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.083 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.878 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545095 SAMN20328820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09257675/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.521 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.775 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.918 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.478 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545096 SAMN20328819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09257689/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.046 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.767 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.642 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545097 SAMN20328655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09257738/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.726 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.025 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.257 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545098 SAMN20328817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09258042/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.297 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.958 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.686 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545099 SAMN20328818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09257923/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 68 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.245 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.832 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545100 SAMN20328654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09258234/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.808 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.646 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.799 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545101 SAMN20328816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09258384/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.829 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.062 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.651 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545102 SAMN20328814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09258598/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.608 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.41 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.181 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545103 SAMN20328815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09258405/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.56 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.899 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.927 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545104 SAMN20328813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09258660/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.737 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.222 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.969 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545105 SAMN20328590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09258602/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.203 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.326 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.504 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.559 lineage/clade name B.1.628 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545106 SAMN20328653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09258808/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.232 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.811 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.664 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.165 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545107 SAMN20328812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09258835/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.678 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.157 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.788 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545108 SAMN20328652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09258872/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.872 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.606 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.709 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545109 SAMN20328651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09258899/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.142 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.522 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.874 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545110 SAMN20328650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09259044/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.793 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.648 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.36 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545111 SAMN20328649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09259269/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.581 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.121 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.499 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.352 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545112 SAMN20328811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09259401/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.827 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.951 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.28 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545113 SAMN20328810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09259687/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.701 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.474 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545114 SAMN20328648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09259746/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.812 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.543 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.972 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545115 SAMN20328809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09259784/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.138 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.999 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.065 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545116 SAMN20328808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09259856/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.64 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.854 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545117 SAMN20328807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09260274/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.112 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.019 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.531 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545118 SAMN20328806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09260427/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.471 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.287 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.818 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.07 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545119 SAMN20328805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09260491/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.982 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.389 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.553 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545120 SAMN20328804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09260506/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.748 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.987 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.821 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545121 SAMN20328803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09260539/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.685 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.202 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.035 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545122 SAMN20328802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09261162/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.35 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.146 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.507 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545123 SAMN20328801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09261523/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.124 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.906 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.732 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545124 SAMN20328800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09261552/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.819 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.093 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.594 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545125 SAMN20328799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09261619/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.379 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.581 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.917 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545126 SAMN20328798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09262083/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.237 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.236 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.774 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545127 SAMN20328647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09261906/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.451 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.106 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.144 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545128 SAMN20328797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09262424/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.116 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.033 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.069 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545129 SAMN20328796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09263073/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.852 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.523 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545130 SAMN20328795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09263077/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.935 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.494 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.216 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.598 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545131 SAMN20328794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09263171/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.861 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.819 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.266 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545132 SAMN20328793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09263329/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.586 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.139 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545133 SAMN20328567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09265565/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.96 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.773 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545134 SAMN20328566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09265568/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.058 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.92 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.767 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545135 SAMN20328792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09264044/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.057 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.124 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.744 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545136 SAMN20328565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09265639/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.356 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.307 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.388 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545137 SAMN20328646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09265708/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.948 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.759 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.054 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545138 SAMN20328791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09266010/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.294 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.66 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545139 SAMN20328790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09266012/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.38 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.648 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545140 SAMN20328789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09266135/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.291 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.225 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.779 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545141 SAMN20328605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09266531/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.067 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.477 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.406 lineage/clade name C.36.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545142 SAMN20328788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09266504/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.064 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.824 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.164 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545143 SAMN20328787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267033/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.913 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.795 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.483 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545144 SAMN20328589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09267300/2021 collected_by Mako Medical collection_date 2021-06-28 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.862 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.587 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.692 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545145 SAMN20328786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267302/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.421 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.696 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.434 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.738 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545146 SAMN20328785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267392/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.006 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.059 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.462 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545147 SAMN20328645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09267675/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.573 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.522 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.02 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545148 SAMN20328784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267552/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.999 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.45 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.675 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545149 SAMN20328783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267680/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.048 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.632 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.598 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545150 SAMN20328782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267683/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.724 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.347 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.06 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545151 SAMN20328644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09267702/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.778 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.376 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545152 SAMN20328781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267705/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.37 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.076 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.623 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.883 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545153 SAMN20328780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09267774/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.74 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.368 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.337 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545154 SAMN20328643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09267824/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.547 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.781 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.874 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545155 SAMN20328779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09268001/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.649 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.959 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.813 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545156 SAMN20328778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09268143/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.463 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.657 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.638 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545157 SAMN20328777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09268959/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race I collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.38 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.448 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.54 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545158 SAMN20328776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09270068/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.214 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.043 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.838 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545159 SAMN20328775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09270088/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.998 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.328 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.335 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.692 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545160 SAMN20328774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09270495/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.467 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.341 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.849 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545161 SAMN20328773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09270727/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.886 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.368 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.79 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545162 SAMN20328772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09270772/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.442 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.878 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.258 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545163 SAMN20328771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09271024/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.593 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.063 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.134 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545164 SAMN20328642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09271127/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.392 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.467 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.501 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545165 SAMN20328770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09271595/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.335 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.745 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.067 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545166 SAMN20328641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09271472/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.853 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.91 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.454 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545167 SAMN20328769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09271625/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.122 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.118 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.842 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545168 SAMN20328588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09272279/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.459 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.893 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.751 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545169 SAMN20328768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09271850/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.298 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.188 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.703 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545170 SAMN20328767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09272039/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.333 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.943 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.234 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545171 SAMN20328765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09272763/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.4 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.246 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.377 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545172 SAMN20328766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09272582/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.919 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.237 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.649 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545173 SAMN20328764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09272875/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race N collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.35 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.43 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.669 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545174 SAMN20328763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09273107/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.683 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.148 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.224 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545175 SAMN20328762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09273245/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.541 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.991 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.668 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545176 SAMN20328761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09273291/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.645 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.665 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.342 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.944 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545177 SAMN20328760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09273303/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.362 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.961 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.124 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.77 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545178 SAMN20328759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09273305/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.621 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.359 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.538 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545179 SAMN20328758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09273334/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.14 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.151 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.598 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545180 SAMN20328587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09274042/2021 collected_by Mako Medical collection_date 2021-06-29 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.41 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.344 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.802 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.804 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545181 SAMN20328757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09275277/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.579 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.517 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.088 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545182 SAMN20328640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09275650/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.394 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.561 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.862 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.308 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545183 SAMN20328756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09275500/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.515 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.549 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.204 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.94 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545184 SAMN20328755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09275716/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.119 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.856 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.742 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545185 SAMN20328638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09276181/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.371 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.278 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.568 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545186 SAMN20328639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09275800/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.278 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.907 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.126 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.999 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545187 SAMN20328754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09276326/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.878 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.536 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545188 SAMN20328752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09276693/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.243 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.7 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.019 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545189 SAMN20328751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09276711/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.718 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.485 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.753 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.32 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545190 SAMN20328753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09276580/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.97 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.376 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.278 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.942 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545191 SAMN20328750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09276825/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.459 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.371 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545192 SAMN20328749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09277074/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.617 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.304 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.013 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545193 SAMN20328637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09277137/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.604 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.055 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.289 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545194 SAMN20328564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09277223/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.791 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.216 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.263 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545195 SAMN20328563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09277245/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.229 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.622 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545196 SAMN20328748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09277287/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.693 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.158 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.688 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545197 SAMN20328747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09277374/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.161 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.824 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.093 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545198 SAMN20328746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09277395/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.631 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.87 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.956 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545199 SAMN20328745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09277405/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.728 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.564 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545200 SAMN20328744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09277415/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.516 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.734 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.87 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545201 SAMN20328743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278125/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.839 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.523 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.214 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545202 SAMN20328741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278259/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.052 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.438 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.352 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545203 SAMN20328742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278228/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.489 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.801 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.041 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545204 SAMN20328740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278320/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.531 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.305 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.552 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545205 SAMN20328739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278429/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.621 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.043 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.091 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545206 SAMN20328738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278672/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.427 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.419 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.036 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545207 SAMN20328636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09278695/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.743 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.213 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.429 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545208 SAMN20328737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09278875/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.644 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.461 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.382 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.47 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545209 SAMN20328736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09279158/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.475 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.138 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.931 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545210 SAMN20328735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09279601/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.25 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.294 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.661 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545211 SAMN20328734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09279718/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.686 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.675 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.805 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545212 SAMN20328586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09280375/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.622 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.228 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.065 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545213 SAMN20328617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280757/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545214 SAMN20328615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280820/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545215 SAMN20328616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280784/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545216 SAMN20328612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280880/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545217 SAMN20328613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280867/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545218 SAMN20328614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280853/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545219 SAMN20328611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280903/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545220 SAMN20328610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280929/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545221 SAMN20328609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280947/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545222 SAMN20328608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280968/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545223 SAMN20328606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09281015/2021 collected_by Mako Medical collection_date 2021-06-22 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545224 SAMN20328607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB09280991/2021 collected_by Mako Medical collection_date 2021-06-23 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545225 SAMN20328733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281150/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race I collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.443 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.14 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.578 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545226 SAMN20328599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09281210/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.303 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.242 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.784 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.066 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545227 SAMN20328732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281169/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.717 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.709 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.96 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.067 lineage/clade name B.1.621.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545228 SAMN20328731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281363/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.949 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.951 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.316 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545229 SAMN20328585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09281392/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.721 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.903 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545230 SAMN20328730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281366/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race I collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.045 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.212 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.297 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545231 SAMN20328729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281370/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.115 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.601 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.556 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545232 SAMN20328728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281402/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.449 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.997 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.386 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545233 SAMN20328727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281668/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.053 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.732 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.857 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.131 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545234 SAMN20328726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281757/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.594 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.081 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545235 SAMN20328724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09283146/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race I collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.205 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.561 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545236 SAMN20328725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09281774/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.288 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545237 SAMN20328635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09283633/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.433 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.765 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.606 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545238 SAMN20328575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09283694/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.565 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.95 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.984 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.132 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545239 SAMN20328723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09283881/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.796 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.421 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.86 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545240 SAMN20328722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09283936/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.532 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.849 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.366 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545241 SAMN20328721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09284125/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.301 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.864 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.253 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545242 SAMN20328634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09283928/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.421 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.787 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.485 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545243 SAMN20328720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09284240/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.629 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.824 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.976 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545244 SAMN20328719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09284529/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.359 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.44 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.084 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.754 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545245 SAMN20328718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09284775/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.849 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.803 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.306 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545246 SAMN20328604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09284568/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.613 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.88 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.194 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.683 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545248 SAMN20328717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09284860/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.07 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.122 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.409 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545249 SAMN20328716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09284878/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.087 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.179 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.325 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545273 SAMN20328695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09290203/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.744 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.699 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545274 SAMN20328696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09289991/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.917 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.013 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.326 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.378 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545275 SAMN20328694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09290205/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.491 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.555 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.323 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.796 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545276 SAMN20328957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/AR-CDC-MMB09290376/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.646 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.935 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.9 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545277 SAMN20328693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09290382/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.616 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.779 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.165 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545278 SAMN20328584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09290598/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.674 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.193 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.178 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.84 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545279 SAMN20328583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09290618/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.645 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 10.774 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.238 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545280 SAMN20328630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09292236/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.73 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.448 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.012 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.369 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545281 SAMN20328629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09292251/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.122 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.683 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.054 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.981 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545282 SAMN20328582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09290692/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.217 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.269 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.264 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.269 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545283 SAMN20328692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09292398/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.277 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.286 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.61 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.837 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545284 SAMN20328628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09292267/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.942 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.519 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.922 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.194 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545285 SAMN20328626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09293345/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.625 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.367 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.867 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545286 SAMN20328627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09293251/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.417 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.841 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.397 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545287 SAMN20328691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09294304/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.045 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.72 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.895 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545288 SAMN20328690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09294943/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.351 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.287 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.675 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545289 SAMN20328625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09294822/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.678 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.284 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.161 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545290 SAMN20328624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09294992/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.379 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.101 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.696 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545291 SAMN20328623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09295300/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.455 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.994 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.46 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545292 SAMN20328622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09295307/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.043 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.021 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.277 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545293 SAMN20328688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09295633/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.507 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.246 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.569 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.424 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545294 SAMN20328689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09295323/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.219 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.516 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.189 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545295 SAMN20328621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09295613/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.647 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.94 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.198 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545296 SAMN20328687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09295709/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.542 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.12 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545247 SAMN20328633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09284610/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.566 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.58 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.697 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545250 SAMN20328715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09285199/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.948 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.603 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.035 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545251 SAMN20328714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09285357/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.45 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.303 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.731 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545252 SAMN20328713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09286127/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.134 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.029 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.094 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545253 SAMN20328712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09286209/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.078 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.373 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545254 SAMN20328711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09286312/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.257 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.447 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.492 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545255 SAMN20328710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09286394/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.239 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.333 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.499 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545256 SAMN20328579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB09286432/2021 collected_by Mako Medical collection_date 2021-06-30 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.981 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.003 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.29 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545257 SAMN20328708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09286751/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.65 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.432 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.243 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545258 SAMN20328709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09286498/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.959 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.485 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.254 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545259 SAMN20328707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287066/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.705 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.52 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.797 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545260 SAMN20328706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287067/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.19 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545261 SAMN20328705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287327/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.595 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.093 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.811 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545262 SAMN20328704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287361/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.817 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.327 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.562 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.837 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545263 SAMN20328703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287384/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.572 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.718 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.033 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545264 SAMN20328702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287719/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.666 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.128 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.855 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545265 SAMN20328598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09287482/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.293 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.666 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.354 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545266 SAMN20328701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09287868/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.975 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.42 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.785 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545267 SAMN20328632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09287930/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.366 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.303 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.279 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545268 SAMN20328700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09288425/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.927 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.563 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545269 SAMN20328699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09289476/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.957 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.931 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545270 SAMN20328698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09289625/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.509 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.261 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.874 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545271 SAMN20328631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09289877/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.152 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.123 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.487 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545272 SAMN20328697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09289942/2021 collected_by Mako Medical collection_date 2021-07-01 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.059 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.213 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545297 SAMN20328686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09295841/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.129 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.172 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.181 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545298 SAMN20328684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09296130/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.201 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.487 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.38 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545299 SAMN20328685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09296124/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.485 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.263 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545300 SAMN20328683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09296427/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.782 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.532 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.892 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545301 SAMN20328682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09297034/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.534 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.431 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.782 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545302 SAMN20328681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09297389/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.979 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.666 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.844 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545303 SAMN20328680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09297488/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.987 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.44 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.334 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545304 SAMN20328679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09297541/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.867 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.498 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.207 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545305 SAMN20328678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298017/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.808 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.005 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.046 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545306 SAMN20328677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298073/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.384 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.871 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.549 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545307 SAMN20328676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298107/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.551 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.55 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.374 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545308 SAMN20328620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09298439/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race A collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.059 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.239 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.146 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545309 SAMN20328675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298529/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race O collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.383 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.277 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.739 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.725 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545310 SAMN20328673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298708/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.061 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.821 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.834 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545311 SAMN20328674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298591/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.975 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.113 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545312 SAMN20328672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298729/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.347 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.42 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.235 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545313 SAMN20328671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09298890/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.111 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.407 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.295 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545314 SAMN20328562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09299097/2021 collected_by Mako Medical collection_date 2021-07-02 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.718 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.835 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.239 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545315 SAMN20328580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09300114/2021 collected_by Mako Medical collection_date 2021-07-03 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.496 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.942 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.101 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545316 SAMN20328581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09299889/2021 collected_by Mako Medical collection_date 2021-07-03 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.964 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.368 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.672 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.084 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545317 SAMN20328670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09300237/2021 collected_by Mako Medical collection_date 2021-07-03 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.58 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545318 SAMN20328561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09300788/2021 collected_by Mako Medical collection_date 2021-07-03 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.176 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.957 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.546 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS9545925 SAMN20328896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09245757/2021 collected_by Mako Medical collection_date 2021-06-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race W collection_device Nasal Swab collection_method Nasal Swab diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.127 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.049 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.408 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated