<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE180834" accession="SRP329907">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP329907</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA749755</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE180834</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Genome-wide CRISPR screen to identfy immune evasion genes in pancreatic cancer</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>Here we systematically dissected PDA intrinsic mechanisms of immune evasion by in vitro and in vivo CRISPR screening. Beyond the conserved set of genes regulating anti-cancer immunity we identified Rnf31 and Vps4b as essential factors required for escaping CD8+ T cell-killing. While the absence of Rnf31 induced sensitivity to T cell killing through TNF-mediated apoptosis in murine cancer cells and human PDA organoids, loss of Vps4b abrogated functional autophagy, resulting in accumulation of CD8+ T cell-derived granzyme B and subsequent tumor cell lysis. Overall design: Genome-wide CRISPR screen in pancreatic cancer cells using the Brie sgRNA library. Cancer cells were co-cultured with CD8 T cells and resistors/sensitizer (genes) were identified after T cell selection. Candidates Rnf31 and Vps4b were chosen for further analysis and RNA-Seq was performed on WT-KPC cells or KPC cells with Rnf31/Vps4b knockout with and without T cell co-culture. The same as done for Stat1-KO KPC cells as a resistor to T cell killing.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE180834</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>35379808</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
