SRS9663980 SAMN20516827 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00776 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-20 subject_id MIRA_011 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00776_1.fastq.gz filename2 S.170712.00776_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663981 SAMN20516836 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00787 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-27 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00787_1.fastq.gz filename2 S.170712.00787_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663982 SAMN20516926 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00894 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-30 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00894_1.fastq.gz filename2 S.170712.00894_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663983 SAMN20516927 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00895 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-31 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00895_1.fastq.gz filename2 S.170712.00895_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663984 SAMN20516928 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00896 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-03 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00896_1.fastq.gz filename2 S.170712.00896_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663985 SAMN20516929 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00898 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-06 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00898_1.fastq.gz filename2 S.170712.00898_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663986 SAMN20516930 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00899 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-11 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00899_1.fastq.gz filename2 S.170712.00899_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663987 SAMN20516931 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00901 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-07 subject_id MIRA_016 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00901_1.fastq.gz filename2 S.170712.00901_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663988 SAMN20516839 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00792 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-30 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00792_1.fastq.gz filename2 S.170712.00792_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663990 SAMN20516842 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00795 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-06 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00795_1.fastq.gz filename2 S.170712.00795_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663991 SAMN20516844 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00797 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-10 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00797_1.fastq.gz filename2 S.170712.00797_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663992 SAMN20516843 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00796 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-07 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00796_1.fastq.gz filename2 S.170712.00796_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663993 SAMN20516845 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00798 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-11 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00798_1.fastq.gz filename2 S.170712.00798_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663994 SAMN20516828 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00777 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-21 subject_id MIRA_011 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00777_1.fastq.gz filename2 S.170712.00777_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663995 SAMN20516846 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00799 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-12 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00799_1.fastq.gz filename2 S.170712.00799_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663996 SAMN20516847 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00800 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-13 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00800_1.fastq.gz filename2 S.170712.00800_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663997 SAMN20516849 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00804 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-17 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00804_1.fastq.gz filename2 S.170712.00804_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663998 SAMN20516850 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00806 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-19 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00806_1.fastq.gz filename2 S.170712.00806_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663999 SAMN20516853 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00810 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-24 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00810_1.fastq.gz filename2 S.170712.00810_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664000 SAMN20516852 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00809 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-21 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00809_1.fastq.gz filename2 S.170712.00809_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664001 SAMN20516855 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00812 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-26 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00812_1.fastq.gz filename2 S.170712.00812_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664002 SAMN20516854 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00811 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-25 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00811_1.fastq.gz filename2 S.170712.00811_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664003 SAMN20516829 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00778 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-22 subject_id MIRA_011 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00778_1.fastq.gz filename2 S.170712.00778_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664004 SAMN20516857 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00814 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-24 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00814_1.fastq.gz filename2 S.170712.00814_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664005 SAMN20516858 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00815 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-27 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00815_1.fastq.gz filename2 S.170712.00815_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664006 SAMN20516860 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00818 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-29 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00818_1.fastq.gz filename2 S.170712.00818_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664007 SAMN20516862 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00820 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-31 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00820_1.fastq.gz filename2 S.170712.00820_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664008 SAMN20516861 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00819 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-30 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00819_1.fastq.gz filename2 S.170712.00819_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664009 SAMN20516865 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00823 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-07 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00823_1.fastq.gz filename2 S.170712.00823_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664010 SAMN20516864 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00822 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-06 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00822_1.fastq.gz filename2 S.170712.00822_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664011 SAMN20516830 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00779 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-23 subject_id MIRA_011 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00779_1.fastq.gz filename2 S.170712.00779_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664012 SAMN20516866 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00824 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-10 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00824_1.fastq.gz filename2 S.170712.00824_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664013 SAMN20516868 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00826 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-12 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00826_1.fastq.gz filename2 S.170712.00826_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664014 SAMN20516870 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00828 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-14 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00828_1.fastq.gz filename2 S.170712.00828_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664015 SAMN20516867 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00825 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-11 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00825_1.fastq.gz filename2 S.170712.00825_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664016 SAMN20516869 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00827 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-13 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00827_1.fastq.gz filename2 S.170712.00827_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664017 SAMN20516871 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00829 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-17 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00829_1.fastq.gz filename2 S.170712.00829_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664018 SAMN20516873 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00831 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-19 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00831_1.fastq.gz filename2 S.170712.00831_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664019 SAMN20516880 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00839 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-28 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00839_1.fastq.gz filename2 S.170712.00839_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664020 SAMN20516878 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00837 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-26 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00837_1.fastq.gz filename2 S.170712.00837_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664021 SAMN20516881 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00840 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-01 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00840_1.fastq.gz filename2 S.170712.00840_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664022 SAMN20516883 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00842 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-03 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00842_1.fastq.gz filename2 S.170712.00842_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664024 SAMN20516832 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00782 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-21 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00782_1.fastq.gz filename2 S.170712.00782_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664026 SAMN20516886 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00846 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-08 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00846_1.fastq.gz filename2 S.170712.00846_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664028 SAMN20516890 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00851 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-12 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00851_1.fastq.gz filename2 S.170712.00851_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664030 SAMN20516892 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00853 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-16 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00853_1.fastq.gz filename2 S.170712.00853_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664032 SAMN20516833 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00783 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-22 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00783_1.fastq.gz filename2 S.170712.00783_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664034 SAMN20516897 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00860 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-24 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00860_1.fastq.gz filename2 S.170712.00860_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664036 SAMN20516898 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00861 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-25 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00861_1.fastq.gz filename2 S.170712.00861_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664038 SAMN20516893 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00854 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-17 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00854_1.fastq.gz filename2 S.170712.00854_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664040 SAMN20516900 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00863 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-30 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00863_1.fastq.gz filename2 S.170712.00863_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664042 SAMN20516905 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00869 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-06-06 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00869_1.fastq.gz filename2 S.170712.00869_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664044 SAMN20516903 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00866 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-06-02 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00866_1.fastq.gz filename2 S.170712.00866_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664046 SAMN20516908 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00874 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-24 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00874_1.fastq.gz filename2 S.170712.00874_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664048 SAMN20516906 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00871 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-06-07 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00871_1.fastq.gz filename2 S.170712.00871_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664050 SAMN20516911 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00877 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-29 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00877_1.fastq.gz filename2 S.170712.00877_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664051 SAMN20516912 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00878 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-30 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00878_1.fastq.gz filename2 S.170712.00878_2.fastq.gz BioSampleModel Metagenome or environmental SRS9663989 SAMN20516841 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00794 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-03 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00794_1.fastq.gz filename2 S.170712.00794_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664023 SAMN20516885 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00844 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-05 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00844_1.fastq.gz filename2 S.170712.00844_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664025 SAMN20516887 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00847 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-09 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00847_1.fastq.gz filename2 S.170712.00847_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664027 SAMN20516888 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00848 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-10 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00848_1.fastq.gz filename2 S.170712.00848_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664029 SAMN20516891 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00852 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-15 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00852_1.fastq.gz filename2 S.170712.00852_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664031 SAMN20516895 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00857 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-19 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00857_1.fastq.gz filename2 S.170712.00857_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664033 SAMN20516896 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00858 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-22 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00858_1.fastq.gz filename2 S.170712.00858_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664035 SAMN20516899 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00862 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-26 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00862_1.fastq.gz filename2 S.170712.00862_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664037 SAMN20516901 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00864 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-31 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00864_1.fastq.gz filename2 S.170712.00864_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664039 SAMN20516894 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00855 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-18 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00855_1.fastq.gz filename2 S.170712.00855_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664041 SAMN20516834 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00785 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-23 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00785_1.fastq.gz filename2 S.170712.00785_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664043 SAMN20516904 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00867 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-06-05 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00867_1.fastq.gz filename2 S.170712.00867_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664045 SAMN20516907 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00872 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-23 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00872_1.fastq.gz filename2 S.170712.00872_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664047 SAMN20516909 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00875 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-27 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00875_1.fastq.gz filename2 S.170712.00875_2.fastq.gz BioSampleModel Metagenome or environmental SRS9664049 SAMN20516910 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00876 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-28 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00876_1.fastq.gz filename2 S.170712.00876_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665559 SAMN20516826 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00775 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-08 subject_id MIRA_010 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00775_1.fastq.gz filename2 S.170712.00775_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665560 SAMN20516837 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00788 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-28 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00788_1.fastq.gz filename2 S.170712.00788_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665561 SAMN20516851 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00807 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-20 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00807_1.fastq.gz filename2 S.170712.00807_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665562 SAMN20516838 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00791 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-29 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00791_1.fastq.gz filename2 S.170712.00791_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665563 SAMN20516848 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00802 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-14 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00802_1.fastq.gz filename2 S.170712.00802_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665564 SAMN20516856 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00813 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-23 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00813_1.fastq.gz filename2 S.170712.00813_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665565 SAMN20516859 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00816 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-28 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00816_1.fastq.gz filename2 S.170712.00816_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665566 SAMN20516863 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00821 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-03 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00821_1.fastq.gz filename2 S.170712.00821_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665567 SAMN20516875 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00833 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-21 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00833_1.fastq.gz filename2 S.170712.00833_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665568 SAMN20516872 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00830 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-18 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00830_1.fastq.gz filename2 S.170712.00830_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665569 SAMN20516874 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00832 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-20 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00832_1.fastq.gz filename2 S.170712.00832_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665570 SAMN20516877 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00836 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-25 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00836_1.fastq.gz filename2 S.170712.00836_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665571 SAMN20516831 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00781 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-20 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00781_1.fastq.gz filename2 S.170712.00781_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665572 SAMN20516882 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00841 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-02 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00841_1.fastq.gz filename2 S.170712.00841_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665573 SAMN20516879 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00838 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-27 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00838_1.fastq.gz filename2 S.170712.00838_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665574 SAMN20516876 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00834 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-24 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00834_1.fastq.gz filename2 S.170712.00834_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665575 SAMN20516913 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00879 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-31 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00879_1.fastq.gz filename2 S.170712.00879_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665576 SAMN20516917 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00883 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-10 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00883_1.fastq.gz filename2 S.170712.00883_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665577 SAMN20516914 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00880 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-03 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00880_1.fastq.gz filename2 S.170712.00880_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665578 SAMN20516919 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00885 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-12 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00885_1.fastq.gz filename2 S.170712.00885_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665579 SAMN20516921 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00887 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-24 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00887_1.fastq.gz filename2 S.170712.00887_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665580 SAMN20516920 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00886 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-13 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00886_1.fastq.gz filename2 S.170712.00886_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665581 SAMN20516916 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00882 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-07 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00882_1.fastq.gz filename2 S.170712.00882_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665582 SAMN20516924 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00890 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-28 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00890_1.fastq.gz filename2 S.170712.00890_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665583 SAMN20516922 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00888 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-24 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00888_1.fastq.gz filename2 S.170712.00888_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665584 SAMN20516923 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00889 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-27 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00889_1.fastq.gz filename2 S.170712.00889_2.fastq.gz BioSampleModel Metagenome or environmental SRS9665585 SAMN20516925 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00893 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-29 subject_id MIRA_015 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00893_1.fastq.gz filename2 S.170712.00893_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666359 SAMN20516902 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00865 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-06-01 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00865_1.fastq.gz filename2 S.170712.00865_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666360 SAMN20516884 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00843 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-04 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00843_1.fastq.gz filename2 S.170712.00843_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666361 SAMN20516918 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00884 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-11 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00884_1.fastq.gz filename2 S.170712.00884_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666362 SAMN20516835 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00786 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-24 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00786_1.fastq.gz filename2 S.170712.00786_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666368 SAMN20516889 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00849 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-05-11 subject_id MIRA_013 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00849_1.fastq.gz filename2 S.170712.00849_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667484 SAMN20516840 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00793 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-03-31 subject_id MIRA_012 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00793_1.fastq.gz filename2 S.170712.00793_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667485 SAMN20516915 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170712.00881 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-04-06 subject_id MIRA_014 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170712.00881_1.fastq.gz filename2 S.170712.00881_2.fastq.gz BioSampleModel Metagenome or environmental