SRS9701524 SAMN20522608 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00008 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00008_1.fastq.gz filename2 S.170920.00008_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701525 SAMN20522607 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00006 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00006_1.fastq.gz filename2 S.170920.00006_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701526 SAMN20522609 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00011 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00011_1.fastq.gz filename2 S.170920.00011_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701527 SAMN20522581 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01536 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01536_1.fastq.gz filename2 S.170914.01536_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701528 SAMN20522580 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01534 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01534_1.fastq.gz filename2 S.170914.01534_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701529 SAMN20522517 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00229 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_050 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00229_1.fastq.gz filename2 S.170905.00229_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701530 SAMN20522579 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01530 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01530_1.fastq.gz filename2 S.170914.01530_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701531 SAMN20522578 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01526 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01526_1.fastq.gz filename2 S.170914.01526_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701532 SAMN20522577 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01522 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01522_1.fastq.gz filename2 S.170914.01522_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701533 SAMN20522575 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01519 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01519_1.fastq.gz filename2 S.170914.01519_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701534 SAMN20522574 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01515 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01515_1.fastq.gz filename2 S.170914.01515_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701535 SAMN20522573 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00118 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_059 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00118_1.fastq.gz filename2 S.170913.00118_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701536 SAMN20522576 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01520 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01520_1.fastq.gz filename2 S.170914.01520_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701537 SAMN20522572 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00116 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00116_1.fastq.gz filename2 S.170913.00116_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701538 SAMN20522570 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00110 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00110_1.fastq.gz filename2 S.170913.00110_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701539 SAMN20522516 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00225 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00225_1.fastq.gz filename2 S.170905.00225_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701540 SAMN20522571 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00114 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00114_1.fastq.gz filename2 S.170913.00114_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701541 SAMN20522569 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00106 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00106_1.fastq.gz filename2 S.170913.00106_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701542 SAMN20522568 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00101 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00101_1.fastq.gz filename2 S.170913.00101_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701543 SAMN20522566 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00095 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00095_1.fastq.gz filename2 S.170913.00095_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701544 SAMN20522565 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00094 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00094_1.fastq.gz filename2 S.170913.00094_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701545 SAMN20522567 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00097 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00097_1.fastq.gz filename2 S.170913.00097_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701546 SAMN20522564 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170913.00091 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-13 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170913.00091_1.fastq.gz filename2 S.170913.00091_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701547 SAMN20522562 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00454 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00454_1.fastq.gz filename2 S.170912.00454_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701548 SAMN20522563 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00455 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_059 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00455_1.fastq.gz filename2 S.170912.00455_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701549 SAMN20522551 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00069 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00069_1.fastq.gz filename2 S.170911.00069_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701550 SAMN20522550 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00068 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00068_1.fastq.gz filename2 S.170911.00068_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701551 SAMN20522549 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00065 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00065_1.fastq.gz filename2 S.170911.00065_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701552 SAMN20522548 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00061 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00061_1.fastq.gz filename2 S.170911.00061_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701553 SAMN20522514 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00218 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_044 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00218_1.fastq.gz filename2 S.170905.00218_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701554 SAMN20522547 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00968 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_056 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00968_1.fastq.gz filename2 S.170908.00968_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701555 SAMN20522546 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00966 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_056 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00966_1.fastq.gz filename2 S.170908.00966_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701556 SAMN20522544 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00961 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00961_1.fastq.gz filename2 S.170908.00961_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701557 SAMN20522543 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00956 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00956_1.fastq.gz filename2 S.170908.00956_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701558 SAMN20522542 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00954 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00954_1.fastq.gz filename2 S.170908.00954_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701559 SAMN20522545 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00964 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00964_1.fastq.gz filename2 S.170908.00964_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701560 SAMN20522541 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00950 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00950_1.fastq.gz filename2 S.170908.00950_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701561 SAMN20522513 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00216 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00216_1.fastq.gz filename2 S.170905.00216_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701562 SAMN20522539 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00942 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00942_1.fastq.gz filename2 S.170908.00942_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701563 SAMN20522540 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00946 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00946_1.fastq.gz filename2 S.170908.00946_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701564 SAMN20522538 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00940 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_051 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00940_1.fastq.gz filename2 S.170908.00940_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701565 SAMN20522537 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00938 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_051 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00938_1.fastq.gz filename2 S.170908.00938_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701566 SAMN20522535 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00936 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00936_1.fastq.gz filename2 S.170908.00936_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701567 SAMN20522534 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00932 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00932_1.fastq.gz filename2 S.170908.00932_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701568 SAMN20522536 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00937 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00937_1.fastq.gz filename2 S.170908.00937_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701569 SAMN20522533 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00928 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00928_1.fastq.gz filename2 S.170908.00928_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701570 SAMN20522532 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00924 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-08 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00924_1.fastq.gz filename2 S.170908.00924_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701571 SAMN20522528 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00481 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00481_1.fastq.gz filename2 S.170906.00481_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701572 SAMN20522527 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00479 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00479_1.fastq.gz filename2 S.170906.00479_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701573 SAMN20522529 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00485 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00485_1.fastq.gz filename2 S.170906.00485_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701574 SAMN20522526 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00477 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_051 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00477_1.fastq.gz filename2 S.170906.00477_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701575 SAMN20522525 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00475 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_050 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00475_1.fastq.gz filename2 S.170906.00475_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701576 SAMN20522523 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00471 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00471_1.fastq.gz filename2 S.170906.00471_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701577 SAMN20522524 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00473 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_046 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00473_1.fastq.gz filename2 S.170906.00473_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701578 SAMN20522522 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00467 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00467_1.fastq.gz filename2 S.170906.00467_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701579 SAMN20522521 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00240 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00240_1.fastq.gz filename2 S.170905.00240_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701580 SAMN20522615 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00134 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00134_1.fastq.gz filename2 S.170921.00134_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701581 SAMN20522613 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00022 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00022_1.fastq.gz filename2 S.170920.00022_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701582 SAMN20522612 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00021 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00021_1.fastq.gz filename2 S.170920.00021_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701583 SAMN20522614 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00131 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00131_1.fastq.gz filename2 S.170921.00131_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701584 SAMN20522611 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00018 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00018_1.fastq.gz filename2 S.170920.00018_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701585 SAMN20522610 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00015 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00015_1.fastq.gz filename2 S.170920.00015_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701586 SAMN20522591 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01511 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01511_1.fastq.gz filename2 S.170915.01511_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701587 SAMN20522590 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01507 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01507_1.fastq.gz filename2 S.170915.01507_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701588 SAMN20522520 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00238 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00238_1.fastq.gz filename2 S.170905.00238_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701589 SAMN20522518 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00231 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_051 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00231_1.fastq.gz filename2 S.170905.00231_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701590 SAMN20522561 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00450 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00450_1.fastq.gz filename2 S.170912.00450_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701591 SAMN20522560 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00446 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_056 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00446_1.fastq.gz filename2 S.170912.00446_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701592 SAMN20522559 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00442 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00442_1.fastq.gz filename2 S.170912.00442_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701593 SAMN20522558 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00438 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00438_1.fastq.gz filename2 S.170912.00438_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701594 SAMN20522557 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00434 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00434_1.fastq.gz filename2 S.170912.00434_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701595 SAMN20522555 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00081 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_056 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00081_1.fastq.gz filename2 S.170911.00081_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701596 SAMN20522556 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170912.00432 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-12 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170912.00432_1.fastq.gz filename2 S.170912.00432_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701597 SAMN20522515 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00223 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00223_1.fastq.gz filename2 S.170905.00223_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701598 SAMN20522554 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00079 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00079_1.fastq.gz filename2 S.170911.00079_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701599 SAMN20522553 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00075 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00075_1.fastq.gz filename2 S.170911.00075_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701600 SAMN20522552 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170911.00071 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-11 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170911.00071_1.fastq.gz filename2 S.170911.00071_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701601 SAMN20522512 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170901.00045 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-07-31 subject_id MIRA_043 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170901.00045_1.fastq.gz filename2 S.170901.00045_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701602 SAMN20522530 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170906.00488 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-06 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170906.00488_1.fastq.gz filename2 S.170906.00488_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701603 SAMN20522511 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170901.00044 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-07-31 subject_id MIRA_043 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170901.00044_1.fastq.gz filename2 S.170901.00044_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701604 SAMN20522510 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170901.00037 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-08-31 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170901.00037_1.fastq.gz filename2 S.170901.00037_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701605 SAMN20522606 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170920.00004 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-20 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170920.00004_1.fastq.gz filename2 S.170920.00004_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701606 SAMN20522531 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170908.00920 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-07 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170908.00920_1.fastq.gz filename2 S.170908.00920_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701607 SAMN20522605 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00026 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00026_1.fastq.gz filename2 S.170919.00026_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701608 SAMN20522604 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00022 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00022_1.fastq.gz filename2 S.170919.00022_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701609 SAMN20522603 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00018 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00018_1.fastq.gz filename2 S.170919.00018_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701610 SAMN20522602 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00014 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00014_1.fastq.gz filename2 S.170919.00014_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701611 SAMN20522519 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170905.00234 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-05 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170905.00234_1.fastq.gz filename2 S.170905.00234_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701612 SAMN20522600 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00009 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00009_1.fastq.gz filename2 S.170919.00009_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701613 SAMN20522601 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00010 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00010_1.fastq.gz filename2 S.170919.00010_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701614 SAMN20522599 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170919.00004 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-19 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170919.00004_1.fastq.gz filename2 S.170919.00004_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701615 SAMN20522598 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00070 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00070_1.fastq.gz filename2 S.170918.00070_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701616 SAMN20522597 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00066 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00066_1.fastq.gz filename2 S.170918.00066_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701617 SAMN20522595 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00057 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00057_1.fastq.gz filename2 S.170918.00057_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701618 SAMN20522594 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00053 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00053_1.fastq.gz filename2 S.170918.00053_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701619 SAMN20522592 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00048 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00048_1.fastq.gz filename2 S.170918.00048_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701620 SAMN20522593 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00052 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00052_1.fastq.gz filename2 S.170918.00052_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701621 SAMN20522596 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170918.00061 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-18 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170918.00061_1.fastq.gz filename2 S.170918.00061_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701622 SAMN20522589 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01504 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01504_1.fastq.gz filename2 S.170915.01504_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701623 SAMN20522588 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01500 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01500_1.fastq.gz filename2 S.170915.01500_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701624 SAMN20522587 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01496 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_053 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01496_1.fastq.gz filename2 S.170915.01496_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701625 SAMN20522586 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01494 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01494_1.fastq.gz filename2 S.170915.01494_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701626 SAMN20522584 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01488 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01488_1.fastq.gz filename2 S.170915.01488_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701627 SAMN20522583 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01541 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_059 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01541_1.fastq.gz filename2 S.170914.01541_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701628 SAMN20522582 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170914.01540 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-14 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170914.01540_1.fastq.gz filename2 S.170914.01540_2.fastq.gz BioSampleModel Metagenome or environmental SRS9701631 SAMN20522585 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170915.01492 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-15 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170915.01492_1.fastq.gz filename2 S.170915.01492_2.fastq.gz BioSampleModel Metagenome or environmental