SRS9702042 SAMN20522766 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00719 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00719_1.fastq.gz filename2 S.171003.00719_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702043 SAMN20522722 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00264 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-24 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00264_1.fastq.gz filename2 S.170925.00264_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702044 SAMN20522721 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00151 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00151_1.fastq.gz filename2 S.170921.00151_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702045 SAMN20522775 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00142 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00142_1.fastq.gz filename2 S.171004.00142_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702047 SAMN20522774 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00138 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00138_1.fastq.gz filename2 S.171004.00138_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702048 SAMN20522767 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00723 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00723_1.fastq.gz filename2 S.171003.00723_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702049 SAMN20522773 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00135 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00135_1.fastq.gz filename2 S.171004.00135_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702050 SAMN20522772 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00133 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00133_1.fastq.gz filename2 S.171004.00133_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702051 SAMN20522771 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00733 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00733_1.fastq.gz filename2 S.171003.00733_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702052 SAMN20522768 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00727 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00727_1.fastq.gz filename2 S.171003.00727_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702053 SAMN20522757 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00355 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00355_1.fastq.gz filename2 S.171002.00355_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702054 SAMN20522756 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170929.00794 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-29 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170929.00794_1.fastq.gz filename2 S.170929.00794_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702055 SAMN20522770 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00731 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00731_1.fastq.gz filename2 S.171003.00731_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702056 SAMN20522769 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00729 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00729_1.fastq.gz filename2 S.171003.00729_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702057 SAMN20522720 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00149 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00149_1.fastq.gz filename2 S.170921.00149_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702058 SAMN20522821 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00221 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00221_1.fastq.gz filename2 S.171011.00221_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702059 SAMN20522819 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00212 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00212_1.fastq.gz filename2 S.171011.00212_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702060 SAMN20522817 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00204 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00204_1.fastq.gz filename2 S.171011.00204_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702061 SAMN20522820 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00216 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00216_1.fastq.gz filename2 S.171011.00216_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702062 SAMN20522818 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00209 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00209_1.fastq.gz filename2 S.171011.00209_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702063 SAMN20522816 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00200 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00200_1.fastq.gz filename2 S.171011.00200_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702064 SAMN20522726 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00280 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-24 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00280_1.fastq.gz filename2 S.170925.00280_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702065 SAMN20522812 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00108 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00108_1.fastq.gz filename2 S.171010.00108_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702066 SAMN20522813 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00110 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00110_1.fastq.gz filename2 S.171010.00110_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702067 SAMN20522815 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00198 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00198_1.fastq.gz filename2 S.171011.00198_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702068 SAMN20522811 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00104 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00104_1.fastq.gz filename2 S.171010.00104_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702069 SAMN20522810 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00101 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00101_1.fastq.gz filename2 S.171010.00101_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702070 SAMN20522814 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00112 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00112_1.fastq.gz filename2 S.171010.00112_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702071 SAMN20522808 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00095 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00095_1.fastq.gz filename2 S.171010.00095_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702072 SAMN20522807 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00092 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00092_1.fastq.gz filename2 S.171010.00092_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702073 SAMN20522805 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00500 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00500_1.fastq.gz filename2 S.171009.00500_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702074 SAMN20522806 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00088 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00088_1.fastq.gz filename2 S.171010.00088_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702075 SAMN20522809 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171010.00099 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-10 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171010.00099_1.fastq.gz filename2 S.171010.00099_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702076 SAMN20522804 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00498 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00498_1.fastq.gz filename2 S.171009.00498_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702077 SAMN20522803 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00496 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00496_1.fastq.gz filename2 S.171009.00496_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702078 SAMN20522802 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00492 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00492_1.fastq.gz filename2 S.171009.00492_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702079 SAMN20522801 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00489 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00489_1.fastq.gz filename2 S.171009.00489_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702080 SAMN20522800 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00483 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00483_1.fastq.gz filename2 S.171009.00483_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702081 SAMN20522725 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00276 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-24 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00276_1.fastq.gz filename2 S.170925.00276_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702082 SAMN20522798 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00477 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00477_1.fastq.gz filename2 S.171009.00477_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702083 SAMN20522797 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00476 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00476_1.fastq.gz filename2 S.171009.00476_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702084 SAMN20522796 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00697 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00697_1.fastq.gz filename2 S.171006.00697_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702085 SAMN20522724 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00272 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-24 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00272_1.fastq.gz filename2 S.170925.00272_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702086 SAMN20522795 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00696 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00696_1.fastq.gz filename2 S.171006.00696_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702087 SAMN20522793 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00691 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00691_1.fastq.gz filename2 S.171006.00691_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702088 SAMN20522799 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171009.00479 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-09 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171009.00479_1.fastq.gz filename2 S.171009.00479_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702089 SAMN20522791 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00682 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00682_1.fastq.gz filename2 S.171006.00682_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702090 SAMN20522792 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00687 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00687_1.fastq.gz filename2 S.171006.00687_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702091 SAMN20522790 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00678 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00678_1.fastq.gz filename2 S.171006.00678_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702092 SAMN20522794 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171006.00694 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-06 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171006.00694_1.fastq.gz filename2 S.171006.00694_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702093 SAMN20522789 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00775 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_062 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00775_1.fastq.gz filename2 S.171005.00775_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702094 SAMN20522764 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00712 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00712_1.fastq.gz filename2 S.171003.00712_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702095 SAMN20522765 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171003.00715 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-03 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171003.00715_1.fastq.gz filename2 S.171003.00715_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702096 SAMN20522761 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00369 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00369_1.fastq.gz filename2 S.171002.00369_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702097 SAMN20522788 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00774 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00774_1.fastq.gz filename2 S.171005.00774_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702098 SAMN20522762 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00373 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00373_1.fastq.gz filename2 S.171002.00373_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702099 SAMN20522760 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00367 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00367_1.fastq.gz filename2 S.171002.00367_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702100 SAMN20522758 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00359 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00359_1.fastq.gz filename2 S.171002.00359_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702101 SAMN20522759 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00363 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00363_1.fastq.gz filename2 S.171002.00363_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702102 SAMN20522763 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171002.00376 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-02 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171002.00376_1.fastq.gz filename2 S.171002.00376_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702103 SAMN20522746 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00309 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00309_1.fastq.gz filename2 S.170928.00309_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702104 SAMN20522719 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00147 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00147_1.fastq.gz filename2 S.170921.00147_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702105 SAMN20522747 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00313 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00313_1.fastq.gz filename2 S.170928.00313_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702106 SAMN20522744 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00303 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00303_1.fastq.gz filename2 S.170928.00303_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702107 SAMN20522743 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170927.00076 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-27 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170927.00076_1.fastq.gz filename2 S.170927.00076_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702108 SAMN20522745 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00306 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00306_1.fastq.gz filename2 S.170928.00306_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702109 SAMN20522742 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170927.00072 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-27 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170927.00072_1.fastq.gz filename2 S.170927.00072_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702110 SAMN20522741 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170927.00070 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-27 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170927.00070_1.fastq.gz filename2 S.170927.00070_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702111 SAMN20522739 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170927.00062 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-27 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170927.00062_1.fastq.gz filename2 S.170927.00062_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702112 SAMN20522738 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170927.00058 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-27 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170927.00058_1.fastq.gz filename2 S.170927.00058_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702113 SAMN20522735 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170926.00031 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-26 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170926.00031_1.fastq.gz filename2 S.170926.00031_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702114 SAMN20522733 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170926.00023 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-26 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170926.00023_1.fastq.gz filename2 S.170926.00023_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702115 SAMN20522740 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170927.00066 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-27 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170927.00066_1.fastq.gz filename2 S.170927.00066_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702116 SAMN20522734 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170926.00027 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-26 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170926.00027_1.fastq.gz filename2 S.170926.00027_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702117 SAMN20522732 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00344 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-25 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00344_1.fastq.gz filename2 S.170925.00344_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702118 SAMN20522731 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00339 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-25 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00339_1.fastq.gz filename2 S.170925.00339_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702119 SAMN20522729 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00332 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-25 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00332_1.fastq.gz filename2 S.170925.00332_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702120 SAMN20522728 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00328 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-25 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00328_1.fastq.gz filename2 S.170925.00328_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702121 SAMN20522717 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00139 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00139_1.fastq.gz filename2 S.170921.00139_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702122 SAMN20522716 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00136 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00136_1.fastq.gz filename2 S.170921.00136_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702123 SAMN20522730 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00335 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-25 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00335_1.fastq.gz filename2 S.170925.00335_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702124 SAMN20522755 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170929.00792 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-29 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170929.00792_1.fastq.gz filename2 S.170929.00792_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702125 SAMN20522727 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00282 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-24 subject_id MIRA_052 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00282_1.fastq.gz filename2 S.170925.00282_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702126 SAMN20522754 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170929.00791 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-29 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170929.00791_1.fastq.gz filename2 S.170929.00791_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702127 SAMN20522753 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170929.00787 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-29 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170929.00787_1.fastq.gz filename2 S.170929.00787_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702128 SAMN20522750 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00321 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00321_1.fastq.gz filename2 S.170928.00321_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702129 SAMN20522752 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170929.00782 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-29 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170929.00782_1.fastq.gz filename2 S.170929.00782_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702130 SAMN20522751 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170929.00778 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-29 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170929.00778_1.fastq.gz filename2 S.170929.00778_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702131 SAMN20522749 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00319 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00319_1.fastq.gz filename2 S.170928.00319_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702132 SAMN20522748 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170928.00315 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-28 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170928.00315_1.fastq.gz filename2 S.170928.00315_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702133 SAMN20522736 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170926.00035 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-26 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170926.00035_1.fastq.gz filename2 S.170926.00035_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702134 SAMN20522737 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170926.00039 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-26 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170926.00039_1.fastq.gz filename2 S.170926.00039_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702135 SAMN20522787 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00772 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00772_1.fastq.gz filename2 S.171005.00772_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702136 SAMN20522786 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00769 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00769_1.fastq.gz filename2 S.171005.00769_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702137 SAMN20522723 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170925.00268 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-24 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170925.00268_1.fastq.gz filename2 S.170925.00268_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702138 SAMN20522718 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.170921.00143 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-09-21 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.170921.00143_1.fastq.gz filename2 S.170921.00143_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702139 SAMN20522785 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00766 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00766_1.fastq.gz filename2 S.171005.00766_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702140 SAMN20522784 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00763 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00763_1.fastq.gz filename2 S.171005.00763_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702141 SAMN20522783 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00759 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00759_1.fastq.gz filename2 S.171005.00759_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702142 SAMN20522782 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00757 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00757_1.fastq.gz filename2 S.171005.00757_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702143 SAMN20522781 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00753 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00753_1.fastq.gz filename2 S.171005.00753_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702144 SAMN20522779 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00153 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00153_1.fastq.gz filename2 S.171004.00153_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702145 SAMN20522777 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00149 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00149_1.fastq.gz filename2 S.171004.00149_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702146 SAMN20522776 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00145 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00145_1.fastq.gz filename2 S.171004.00145_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702148 SAMN20522780 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171005.00751 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-05 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171005.00751_1.fastq.gz filename2 S.171005.00751_2.fastq.gz BioSampleModel Metagenome or environmental SRS9702149 SAMN20522778 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171004.00151 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-04 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171004.00151_1.fastq.gz filename2 S.171004.00151_2.fastq.gz BioSampleModel Metagenome or environmental