SRS9666539 SAMN20523144 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00011 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00011_1.fastq.gz filename2 S.171023.00011_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666541 SAMN20523141 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00595 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_065 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00595_1.fastq.gz filename2 S.171020.00595_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666542 SAMN20523139 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00590 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00590_1.fastq.gz filename2 S.171020.00590_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666543 SAMN20523140 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00592 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00592_1.fastq.gz filename2 S.171020.00592_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666544 SAMN20523138 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00588 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00588_1.fastq.gz filename2 S.171020.00588_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666545 SAMN20523137 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00586 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00586_1.fastq.gz filename2 S.171020.00586_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666546 SAMN20523136 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00582 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00582_1.fastq.gz filename2 S.171020.00582_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666547 SAMN20523135 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00578 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00578_1.fastq.gz filename2 S.171020.00578_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666548 SAMN20523134 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00574 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00574_1.fastq.gz filename2 S.171020.00574_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666549 SAMN20523113 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00692 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00692_1.fastq.gz filename2 S.171017.00692_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666550 SAMN20523112 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00690 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00690_1.fastq.gz filename2 S.171017.00690_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666551 SAMN20523111 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00689 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00689_1.fastq.gz filename2 S.171017.00689_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666552 SAMN20523076 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00139 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00139_1.fastq.gz filename2 S.171012.00139_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666553 SAMN20523110 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00687 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00687_1.fastq.gz filename2 S.171017.00687_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666554 SAMN20523109 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00685 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00685_1.fastq.gz filename2 S.171017.00685_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666555 SAMN20523106 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00676 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00676_1.fastq.gz filename2 S.171017.00676_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666556 SAMN20523108 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00681 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00681_1.fastq.gz filename2 S.171017.00681_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666557 SAMN20523107 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00679 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00679_1.fastq.gz filename2 S.171017.00679_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666558 SAMN20523105 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00675 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00675_1.fastq.gz filename2 S.171017.00675_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666559 SAMN20523104 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00672 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00672_1.fastq.gz filename2 S.171017.00672_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666560 SAMN20523103 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171017.00671 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-17 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171017.00671_1.fastq.gz filename2 S.171017.00671_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666561 SAMN20523102 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01588 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01588_1.fastq.gz filename2 S.171016.01588_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666562 SAMN20523075 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00135 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00135_1.fastq.gz filename2 S.171012.00135_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666563 SAMN20523171 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00548 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00548_1.fastq.gz filename2 S.171026.00548_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666564 SAMN20523101 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01586 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01586_1.fastq.gz filename2 S.171016.01586_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666565 SAMN20523153 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00186 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00186_1.fastq.gz filename2 S.171024.00186_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666566 SAMN20523157 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00082 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00082_1.fastq.gz filename2 S.171025.00082_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666567 SAMN20523158 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00086 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00086_1.fastq.gz filename2 S.171025.00086_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666568 SAMN20523152 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00184 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00184_1.fastq.gz filename2 S.171024.00184_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666569 SAMN20523080 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00153 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00153_1.fastq.gz filename2 S.171012.00153_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666570 SAMN20523143 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00009 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00009_1.fastq.gz filename2 S.171023.00009_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666571 SAMN20523142 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00005 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00005_1.fastq.gz filename2 S.171023.00005_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666572 SAMN20523079 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00150 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00150_1.fastq.gz filename2 S.171012.00150_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666573 SAMN20523133 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00570 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00570_1.fastq.gz filename2 S.171020.00570_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666574 SAMN20523132 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171020.00569 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-20 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171020.00569_1.fastq.gz filename2 S.171020.00569_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666575 SAMN20523131 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00627 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_065 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00627_1.fastq.gz filename2 S.171019.00627_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666576 SAMN20523124 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00610 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00610_1.fastq.gz filename2 S.171019.00610_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666577 SAMN20523121 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00172 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00172_1.fastq.gz filename2 S.171018.00172_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666578 SAMN20523117 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00158 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00158_1.fastq.gz filename2 S.171018.00158_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666579 SAMN20523116 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00154 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00154_1.fastq.gz filename2 S.171018.00154_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666580 SAMN20523114 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00149 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00149_1.fastq.gz filename2 S.171018.00149_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666581 SAMN20523115 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00151 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00151_1.fastq.gz filename2 S.171018.00151_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666582 SAMN20523092 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00033 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00033_1.fastq.gz filename2 S.171016.00033_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666583 SAMN20523074 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00133 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00133_1.fastq.gz filename2 S.171012.00133_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666584 SAMN20523091 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00031 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00031_1.fastq.gz filename2 S.171016.00031_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666585 SAMN20523089 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00026 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00026_1.fastq.gz filename2 S.171016.00026_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666586 SAMN20523088 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00022 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00022_1.fastq.gz filename2 S.171016.00022_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666587 SAMN20523086 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00014 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00014_1.fastq.gz filename2 S.171016.00014_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666588 SAMN20523085 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00009 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00009_1.fastq.gz filename2 S.171016.00009_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666589 SAMN20523100 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01583 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01583_1.fastq.gz filename2 S.171016.01583_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666590 SAMN20523099 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01581 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01581_1.fastq.gz filename2 S.171016.01581_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666591 SAMN20523097 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01573 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01573_1.fastq.gz filename2 S.171016.01573_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666592 SAMN20523098 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01577 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01577_1.fastq.gz filename2 S.171016.01577_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666593 SAMN20523096 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01570 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01570_1.fastq.gz filename2 S.171016.01570_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666594 SAMN20523095 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01568 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01568_1.fastq.gz filename2 S.171016.01568_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666595 SAMN20523177 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171030.00725 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-30 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171030.00725_1.fastq.gz filename2 S.171030.00725_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666596 SAMN20523084 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00005 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00005_1.fastq.gz filename2 S.171016.00005_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666597 SAMN20523174 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171030.00715 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-30 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171030.00715_1.fastq.gz filename2 S.171030.00715_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666598 SAMN20523175 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171030.00717 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-30 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171030.00717_1.fastq.gz filename2 S.171030.00717_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666599 SAMN20523173 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00551 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_065 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00551_1.fastq.gz filename2 S.171026.00551_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666600 SAMN20523082 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00156 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00156_1.fastq.gz filename2 S.171012.00156_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666601 SAMN20523172 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00550 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00550_1.fastq.gz filename2 S.171026.00550_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666602 SAMN20523073 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00228 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_061 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00228_1.fastq.gz filename2 S.171011.00228_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666603 SAMN20523072 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171011.00224 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-11 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171011.00224_1.fastq.gz filename2 S.171011.00224_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666604 SAMN20523163 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00097 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00097_1.fastq.gz filename2 S.171025.00097_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666605 SAMN20523155 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00190 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00190_1.fastq.gz filename2 S.171024.00190_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666606 SAMN20523154 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00188 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00188_1.fastq.gz filename2 S.171024.00188_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666607 SAMN20523151 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00181 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00181_1.fastq.gz filename2 S.171024.00181_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666608 SAMN20523150 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00177 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00177_1.fastq.gz filename2 S.171024.00177_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666609 SAMN20523149 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00173 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00173_1.fastq.gz filename2 S.171024.00173_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666610 SAMN20523148 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00021 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_065 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00021_1.fastq.gz filename2 S.171023.00021_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666611 SAMN20523147 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00019 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00019_1.fastq.gz filename2 S.171023.00019_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666612 SAMN20523146 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00017 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00017_1.fastq.gz filename2 S.171023.00017_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666613 SAMN20523145 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171023.00015 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-23 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171023.00015_1.fastq.gz filename2 S.171023.00015_2.fastq.gz BioSampleModel Metagenome or environmental SRS9666614 SAMN20523156 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171024.00192 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-24 subject_id MIRA_065 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171024.00192_1.fastq.gz filename2 S.171024.00192_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667628 SAMN20523170 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00545 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00545_1.fastq.gz filename2 S.171026.00545_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667629 SAMN20523168 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00539 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00539_1.fastq.gz filename2 S.171026.00539_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667630 SAMN20523169 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00543 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00543_1.fastq.gz filename2 S.171026.00543_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667631 SAMN20523167 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00534 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00534_1.fastq.gz filename2 S.171026.00534_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667632 SAMN20523164 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00099 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_065 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00099_1.fastq.gz filename2 S.171025.00099_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667633 SAMN20523166 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00530 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_041 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00530_1.fastq.gz filename2 S.171026.00530_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667634 SAMN20523165 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171026.00528 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-26 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171026.00528_1.fastq.gz filename2 S.171026.00528_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667635 SAMN20523159 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00088 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00088_1.fastq.gz filename2 S.171025.00088_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667636 SAMN20523161 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00093 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00093_1.fastq.gz filename2 S.171025.00093_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667637 SAMN20523160 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00092 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00092_1.fastq.gz filename2 S.171025.00092_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667638 SAMN20523078 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00146 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00146_1.fastq.gz filename2 S.171012.00146_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667639 SAMN20523129 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00624 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00624_1.fastq.gz filename2 S.171019.00624_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667640 SAMN20523130 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00625 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00625_1.fastq.gz filename2 S.171019.00625_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667641 SAMN20523126 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00617 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00617_1.fastq.gz filename2 S.171019.00617_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667642 SAMN20523128 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00622 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00622_1.fastq.gz filename2 S.171019.00622_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667643 SAMN20523125 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00613 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_045 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00613_1.fastq.gz filename2 S.171019.00613_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667644 SAMN20523122 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00174 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_064 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00174_1.fastq.gz filename2 S.171018.00174_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667645 SAMN20523123 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00609 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00609_1.fastq.gz filename2 S.171019.00609_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667646 SAMN20523077 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00143 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_054 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00143_1.fastq.gz filename2 S.171012.00143_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667647 SAMN20523119 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00166 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_058 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00166_1.fastq.gz filename2 S.171018.00166_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667648 SAMN20523120 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00168 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00168_1.fastq.gz filename2 S.171018.00168_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667649 SAMN20523118 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171018.00162 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-18 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171018.00162_1.fastq.gz filename2 S.171018.00162_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667650 SAMN20523093 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01562 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01562_1.fastq.gz filename2 S.171016.01562_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667651 SAMN20523090 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00029 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00029_1.fastq.gz filename2 S.171016.00029_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667652 SAMN20523087 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00018 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_055 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00018_1.fastq.gz filename2 S.171016.00018_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667653 SAMN20523094 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.01564 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-16 subject_id MIRA_007 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.01564_1.fastq.gz filename2 S.171016.01564_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667654 SAMN20523083 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171016.00003 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-13 subject_id MIRA_003 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171016.00003_1.fastq.gz filename2 S.171016.00003_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667655 SAMN20523176 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171030.00719 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-30 subject_id MIRA_041 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171030.00719_1.fastq.gz filename2 S.171030.00719_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667656 SAMN20523162 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171025.00095 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-25 subject_id MIRA_063 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171025.00095_1.fastq.gz filename2 S.171025.00095_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667657 SAMN20523081 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171012.00154 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-12 subject_id MIRA_060 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171012.00154_1.fastq.gz filename2 S.171012.00154_2.fastq.gz BioSampleModel Metagenome or environmental SRS9667658 SAMN20523127 1850221 respiratory tract metagenome bioproject 529220 PRJNA529220 library_ID S.171019.00619 host Homo sapiens isolation_source human endotracheal aspirate collection_date 2017-10-19 subject_id MIRA_057 geo_loc_name USA: Philadelphia, Pennsylvania lat_lon 39.9526 N 75.1652 W title Respiratory microbiome disruption and risk for ventilator-associated lower respiratory tract infection library_strategy AMPLICON library_source METAGENOMIC library_selection PCR library_layout paired platform ILLUMINA instrument_model Illumina HiSeq 2500 design_description V1-V2 16S rRNA filetype fastq filename S.171019.00619_1.fastq.gz filename2 S.171019.00619_2.fastq.gz BioSampleModel Metagenome or environmental