SRS10146521 SAMN21406185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09668615/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.039 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.804 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.4 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146523 SAMN21406488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09670472/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.325 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.913 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.867 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.086 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146522 SAMN21406489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09668673/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.09 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.831 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.952 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.731 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146520 SAMN21406171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09668270/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.863 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.745 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.148 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.166 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146519 SAMN21406490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09668132/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.541 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.235 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.568 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146518 SAMN21406491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09667818/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.973 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.997 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.158 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146517 SAMN21406493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09667414/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.894 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.754 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.42 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146516 SAMN21406492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09667689/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.039 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.049 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146515 SAMN21406494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09667317/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.383 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.224 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.132 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146514 SAMN21406495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09667212/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.51 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.732 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.457 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146513 SAMN21406496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09666931/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.43 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.449 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146512 SAMN21406497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09666903/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.229 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.269 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.289 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.097 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146511 SAMN21406172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09665908/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.04 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.713 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.95 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.305 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146510 SAMN21406498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09665905/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.308 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146509 SAMN21406499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09665401/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.594 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.334 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.762 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.394 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146508 SAMN21406501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09665238/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.401 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.577 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.323 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.512 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146507 SAMN21406502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09664884/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.767 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.724 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146506 SAMN21406500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09665355/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.87 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 10.464 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 9.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146505 SAMN21406173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09662908/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.415 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.246 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.728 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146504 SAMN21406503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09664772/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.44 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.35 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.138 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146503 SAMN21406148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09662960/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.153 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.136 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.979 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.455 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146502 SAMN21406186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09660311/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.413 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.262 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.942 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146501 SAMN21406504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09650275/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.338 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.01 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.442 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.12 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146500 SAMN21406149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09651379/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.777 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.164 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.359 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.085 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146499 SAMN21406150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09598438/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.951 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.739 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.019 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146524 SAMN21406170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09670489/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.171 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.69 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146525 SAMN21406139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB09670774/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.213 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.243 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.966 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.767 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146526 SAMN21406487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09671502/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.388 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.438 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.519 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.49 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146527 SAMN21406147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09671771/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.347 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.998 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.405 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146528 SAMN21406637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CA-CDC-MMB09671899/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.916 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.559 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.058 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146529 SAMN21406486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09673157/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.464 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.237 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.869 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146530 SAMN21406461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686527/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.681 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.119 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146531 SAMN21406193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB09672197/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.542 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.726 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.046 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146532 SAMN21406460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686552/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.412 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.561 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.91 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146533 SAMN21406459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686576/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.629 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.254 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.471 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.002 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146534 SAMN21406458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686616/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.033 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.633 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.115 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146535 SAMN21406457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686695/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.469 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.27 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.835 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146536 SAMN21406456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686731/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.868 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.637 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.816 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146537 SAMN21406454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686769/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.022 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.101 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.486 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146538 SAMN21406455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686756/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.514 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.395 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.676 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.82 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146539 SAMN21406453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686989/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.159 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.562 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.824 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.335 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146540 SAMN21406636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09687244/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.433 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.57 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.32 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146541 SAMN21406452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687264/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.681 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.828 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.315 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.483 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146542 SAMN21406450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687322/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.66 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.286 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.299 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146543 SAMN21406451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687282/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.072 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.351 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.539 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146544 SAMN21406449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687403/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.304 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.289 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.512 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146545 SAMN21406448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687499/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.557 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.315 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.775 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.744 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146546 SAMN21406447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687549/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.114 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.019 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.281 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146547 SAMN21406446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687618/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.779 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.892 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.481 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.85 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146548 SAMN21406445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687731/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.343 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.587 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.493 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146549 SAMN21406182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09687626/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.26 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.367 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.015 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146550 SAMN21406444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687752/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.417 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.297 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.479 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.441 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146551 SAMN21406443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687761/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.999 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.802 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.467 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146552 SAMN21406442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687834/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.436 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.076 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.879 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146553 SAMN21406441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687963/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.447 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.134 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.863 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146554 SAMN21406635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09687875/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.764 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.482 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.9 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146555 SAMN21406440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09687988/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.291 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.685 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.755 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.627 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146556 SAMN21406634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09688027/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.293 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.892 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.634 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.125 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146557 SAMN21406439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688075/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.893 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.212 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.582 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.108 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146558 SAMN21406438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688112/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.682 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.717 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.839 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.966 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146559 SAMN21406633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09688099/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.281 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.393 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.238 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.587 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146560 SAMN21406437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688161/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.123 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.54 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.122 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146561 SAMN21406436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688197/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.078 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.831 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.212 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.386 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146562 SAMN21406435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688435/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.104 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.937 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.373 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146563 SAMN21406434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688477/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.14 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.027 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146564 SAMN21406433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688561/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.561 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.259 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.439 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146565 SAMN21406432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09688638/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.388 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.863 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.45 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146566 SAMN21406431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09689207/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.16 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.927 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.658 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.356 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146567 SAMN21406430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09689219/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.24 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.493 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.485 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.708 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146568 SAMN21406429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09689246/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.53 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.486 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.144 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.952 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146569 SAMN21406428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09689662/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.625 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.415 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.863 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.259 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146570 SAMN21406632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09689444/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.166 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.947 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.134 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146571 SAMN21406631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09689666/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.556 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.619 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.457 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.423 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146572 SAMN21406630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09689841/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.388 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.004 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146573 SAMN21406427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09689864/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.988 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.395 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.833 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146574 SAMN21406426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690088/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.8 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.371 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.875 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146575 SAMN21406505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/FL-CDC-MMB09690050/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 96 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.383 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.439 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.026 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146576 SAMN21406629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690205/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.672 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.987 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146577 SAMN21406628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690211/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.238 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.116 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.538 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.83 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146578 SAMN21406627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690374/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.376 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.359 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.607 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.619 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146579 SAMN21406425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690289/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.694 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.303 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.24 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.08 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146580 SAMN21406424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690357/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.758 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.644 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.558 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146581 SAMN21406423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690379/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.901 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.991 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.205 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.906 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146582 SAMN21406626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690409/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.514 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.882 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.505 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.055 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146583 SAMN21406625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690454/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.347 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.337 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.083 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146584 SAMN21406422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690502/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.903 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.74 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.693 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146585 SAMN21406623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690558/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.24 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.655 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.385 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.255 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146586 SAMN21406624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690515/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.822 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.558 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.14 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.667 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146587 SAMN21406421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690620/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.721 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.661 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146588 SAMN21406622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690764/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.561 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.022 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.916 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146589 SAMN21406420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09690780/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.023 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.685 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.35 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.755 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146590 SAMN21406621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09690797/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.499 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.109 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.717 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146591 SAMN21406419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691101/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.027 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.632 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146592 SAMN21406418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691172/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.956 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.234 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.894 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146593 SAMN21406416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691424/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.808 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.438 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.865 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.738 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146594 SAMN21406258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716757/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.943 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.128 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146595 SAMN21406417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691285/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.313 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.935 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.614 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146597 SAMN21406257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716761/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.486 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.215 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.682 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146598 SAMN21406256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716802/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.595 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.341 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.664 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146599 SAMN21406554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09716834/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.458 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.078 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.499 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146600 SAMN21406555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09716819/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.978 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.096 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.973 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146601 SAMN21406255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716995/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.23 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.208 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.412 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146602 SAMN21406553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09716997/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.39 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.083 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.38 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.79 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146603 SAMN21406253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717009/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.288 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.767 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.273 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.534 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146604 SAMN21406254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716998/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.868 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.322 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.922 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146605 SAMN21406252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717018/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.399 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.274 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.385 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146606 SAMN21406251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717090/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.554 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.814 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.884 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146607 SAMN21406552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09717010/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.183 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.322 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146608 SAMN21406250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717112/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.628 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.05 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.385 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.559 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146609 SAMN21406249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717136/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.33 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.096 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.969 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146610 SAMN21406551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09717204/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.448 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.434 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.712 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146611 SAMN21406248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717205/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.365 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.091 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.39 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146612 SAMN21406550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09717245/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.443 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.492 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.182 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146613 SAMN21406246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717259/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.126 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.215 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.41 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.708 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146596 SAMN21406556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09716758/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.011 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.527 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.133 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146614 SAMN21406245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717262/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.672 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.484 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.176 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146615 SAMN21406247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717228/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.821 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.074 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.116 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.772 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146616 SAMN21406244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717286/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.51 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.433 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.892 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.59 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146617 SAMN21406127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09717345/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.559 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.057 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146618 SAMN21406243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717372/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.976 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.937 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.176 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146619 SAMN21406241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717504/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.477 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.978 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.147 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146620 SAMN21406242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717415/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.488 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.765 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.43 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146621 SAMN21406240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717565/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.772 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.534 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.801 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.73 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146622 SAMN21406549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09718095/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.29 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.096 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.89 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146623 SAMN21406239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09717889/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.389 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.566 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.36 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.124 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146624 SAMN21406238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09718219/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.717 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.392 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.424 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146625 SAMN21406189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB09718293/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.893 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.713 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.321 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.884 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146626 SAMN21406237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09718318/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.142 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.729 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146627 SAMN21406548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09718228/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.205 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.223 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.111 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.451 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146628 SAMN21406235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09718350/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.043 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.24 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.532 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146629 SAMN21406234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09718387/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.228 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.097 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.215 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.228 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146630 SAMN21406236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09718323/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.326 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.795 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.281 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146631 SAMN21406547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09718603/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.268 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.093 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.157 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.319 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146632 SAMN21406546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09718613/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.035 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.368 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.237 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146633 SAMN21406232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09719036/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.472 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.513 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.645 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146634 SAMN21406233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09718557/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.087 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.03 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.984 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146635 SAMN21406545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09719216/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.37 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.401 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.67 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.759 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146636 SAMN21406544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09719224/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.806 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.188 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.008 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.78 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146637 SAMN21406188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB09719135/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.745 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.248 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.656 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.614 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146638 SAMN21406543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09719524/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.413 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.492 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.922 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146639 SAMN21406542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09719842/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.085 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.667 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.732 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146640 SAMN21406126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09719778/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.967 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.386 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.969 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146641 SAMN21406541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09719847/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.87 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.327 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.893 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146642 SAMN21406230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720014/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.431 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.572 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.804 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146643 SAMN21406231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09719976/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.114 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.879 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.105 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146644 SAMN21406229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720133/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.933 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.832 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.944 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146645 SAMN21406227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720173/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.672 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.469 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.851 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.848 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146646 SAMN21406228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720143/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.322 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.092 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.238 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146647 SAMN21406540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09720202/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.884 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.759 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.91 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.348 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146648 SAMN21406226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720287/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.03 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.844 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.216 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146649 SAMN21406180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09720388/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.6 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.96 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.434 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.138 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146650 SAMN21406539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09720606/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.656 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.758 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.298 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.973 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146651 SAMN21406224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720733/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.882 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.528 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.077 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146652 SAMN21406225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720665/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.622 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.636 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.521 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146653 SAMN21406223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09720992/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race N collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.688 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.524 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.078 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146654 SAMN21406538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09721021/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.49 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.867 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.713 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146655 SAMN21406179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09721046/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.735 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.267 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.824 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146656 SAMN21406222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721058/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.67 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.322 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.543 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.857 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146657 SAMN21406221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721086/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.919 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.57 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.997 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.216 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146658 SAMN21406220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721197/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.187 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.699 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.179 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.115 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146659 SAMN21406415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691433/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.757 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.675 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.65 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146660 SAMN21406414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691593/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.321 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.978 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.228 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.569 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146661 SAMN21406413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691675/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.853 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.616 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.135 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146662 SAMN21406412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09691726/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.8 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.817 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.096 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.096 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146663 SAMN21406411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692050/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.325 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.672 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.594 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146664 SAMN21406410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692076/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.268 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.397 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.555 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146665 SAMN21406409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692180/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.692 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.553 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.023 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.29 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146666 SAMN21406620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09692217/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.81 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.319 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.125 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146667 SAMN21406408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692209/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.954 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.512 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146668 SAMN21406619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09692277/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.49 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.4 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.564 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146669 SAMN21406618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09692353/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.093 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.851 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.404 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146670 SAMN21406407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692337/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.449 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.97 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.503 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146671 SAMN21406406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692466/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.324 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.311 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.661 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146672 SAMN21406405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09692564/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.465 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.873 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.115 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.561 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146673 SAMN21406168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09692666/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.39 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.547 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.57 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146674 SAMN21406404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09693021/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.437 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.974 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.453 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.72 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146675 SAMN21406181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09692672/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.145 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.226 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.887 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146676 SAMN21406191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB09693138/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.027 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.434 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.914 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.954 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146677 SAMN21406403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09693109/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.954 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.704 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146678 SAMN21406402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09693248/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.04 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.295 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.847 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146679 SAMN21406401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09693327/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.911 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.635 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.109 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.652 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146680 SAMN21406144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09693409/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.574 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.557 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.968 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146681 SAMN21406617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09693418/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.199 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.169 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.278 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.251 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146682 SAMN21406616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09693595/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.517 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.513 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.659 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146683 SAMN21406615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09693785/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.774 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.481 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.768 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.556 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146684 SAMN21406400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09693896/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.493 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.572 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.661 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146685 SAMN21406614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09694320/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.463 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.381 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.43 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.533 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146686 SAMN21406398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694141/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.587 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.323 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.674 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146687 SAMN21406399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09693961/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.066 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.865 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.477 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146688 SAMN21406397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694384/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.487 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.127 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.436 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.841 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146689 SAMN21406396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694442/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.821 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.456 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.958 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146690 SAMN21406395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694468/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.154 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.552 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.067 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.208 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146691 SAMN21406394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694489/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.676 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.856 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.548 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146692 SAMN21406613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09694797/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.296 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.492 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146693 SAMN21406393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694601/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.277 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.929 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.195 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146694 SAMN21406392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694910/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.389 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.002 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.952 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.239 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146695 SAMN21406167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09695027/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.865 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.194 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.198 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146696 SAMN21406391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09694990/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.63 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.47 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.503 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146697 SAMN21406389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09695274/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.878 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.886 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.459 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.479 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146698 SAMN21406390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09695113/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.994 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.563 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.108 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146699 SAMN21406612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09695440/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.903 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.865 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.217 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146700 SAMN21406388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09695610/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.115 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.392 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.424 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.592 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146701 SAMN21406387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09695773/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.531 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.091 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.672 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.946 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146702 SAMN21406386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09695777/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.974 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.024 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.957 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146703 SAMN21406385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09695859/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.529 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.496 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146704 SAMN21406384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696018/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.505 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.059 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.658 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146705 SAMN21406611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09696138/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.53 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.246 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.719 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146706 SAMN21406383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696256/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.527 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.919 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.428 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146707 SAMN21406382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696362/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.579 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.027 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.716 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146708 SAMN21406381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696448/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.776 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.369 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.711 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146709 SAMN21406380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696466/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.697 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.911 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.736 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.928 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146710 SAMN21406610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09696476/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.856 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.462 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.16 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.896 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146711 SAMN21406379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696477/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.358 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.89 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.868 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146712 SAMN21406378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09696720/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.552 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.505 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.144 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146713 SAMN21406609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09696864/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.025 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.297 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.437 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.69 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146714 SAMN21406608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09697045/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.595 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.293 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.573 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.601 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146715 SAMN21406143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09697483/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.718 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.477 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.617 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.353 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146716 SAMN21406377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09697570/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.616 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.794 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.747 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146717 SAMN21406176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09697871/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.146 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.321 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.392 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146718 SAMN21406607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09697764/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.508 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.44 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.183 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.935 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146719 SAMN21406606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09697921/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.114 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.835 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.086 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.034 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146720 SAMN21406137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB09698044/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.856 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.865 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.475 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.345 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146721 SAMN21406605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09698585/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.298 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.275 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.838 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146722 SAMN21406604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09698646/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.726 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.501 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.858 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.929 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146723 SAMN21406219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721257/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.331 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.443 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.915 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146724 SAMN21406125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09721370/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.871 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.647 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.136 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146725 SAMN21406218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721364/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.579 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.057 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.588 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146726 SAMN21406217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721406/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.623 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.966 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.449 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146727 SAMN21406537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09721548/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.588 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.498 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.658 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146728 SAMN21406216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721621/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.753 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.015 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.03 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146729 SAMN21406536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09721823/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.94 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.867 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.977 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146730 SAMN21406535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09721880/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.665 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.715 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.656 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146731 SAMN21406534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09721885/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.318 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.114 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.709 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146732 SAMN21406215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09721996/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.102 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.189 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.983 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.645 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146733 SAMN21406533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09722158/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.048 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.125 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.931 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146734 SAMN21406116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB09722162/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.189 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.948 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146735 SAMN21406214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09722380/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.942 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.125 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.807 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.867 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146736 SAMN21406213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09722394/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.092 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.943 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.273 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146737 SAMN21406211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09722468/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.243 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.133 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.214 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.571 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146738 SAMN21406212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09722451/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.81 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.035 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.167 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.974 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146739 SAMN21406532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09722477/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.033 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.879 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.452 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146740 SAMN21406124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09722545/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.029 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.753 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.359 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146741 SAMN21406531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09722762/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.869 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.184 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.215 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146742 SAMN21406530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09722841/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.599 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.476 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146743 SAMN21406210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09722913/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.912 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.626 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.726 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146744 SAMN21406209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09722961/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.952 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.951 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.543 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.66 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146745 SAMN21406207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09723127/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.712 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.629 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.896 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146746 SAMN21406529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09723208/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.876 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.667 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.421 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146747 SAMN21406208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09723066/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.984 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.909 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.046 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.306 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146748 SAMN21406527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09723371/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.252 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.98 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.694 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146749 SAMN21406528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09723261/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.82 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.887 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.846 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146750 SAMN21406175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB09723420/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.654 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.266 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146751 SAMN21406526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09723587/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.379 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.839 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.667 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.967 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146752 SAMN21406525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09723758/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.901 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.238 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.997 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146753 SAMN21406206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09723774/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.688 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.278 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.394 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.151 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146754 SAMN21406524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09724122/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.163 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.083 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.345 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146755 SAMN21406205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09724153/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.313 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.966 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.086 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146756 SAMN21406523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09724430/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.123 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.54 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.256 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146757 SAMN21406522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09724484/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.542 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.449 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.712 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.885 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146758 SAMN21406521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725500/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.075 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.316 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.842 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.053 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146759 SAMN21406520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725583/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.283 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.313 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.02 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.077 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146760 SAMN21406519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725592/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.188 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.537 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.101 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.583 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146761 SAMN21406518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725662/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.156 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.406 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.159 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146762 SAMN21406517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725683/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.639 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.121 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.769 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.157 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146763 SAMN21406204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09725698/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.434 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.347 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.567 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146765 SAMN21406515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725899/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.764 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.159 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.715 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146764 SAMN21406516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725864/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.908 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.236 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.755 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146766 SAMN21406178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09726056/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.861 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.28 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.831 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.213 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146767 SAMN21406187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MA-CDC-MMB09726362/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.922 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.601 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.144 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146768 SAMN21406514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09725908/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.825 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.126 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.87 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.406 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146769 SAMN21406513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726465/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.374 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.823 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146770 SAMN21406511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726631/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.012 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.181 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.213 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146771 SAMN21406512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726535/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.909 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.662 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.979 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146772 SAMN21406510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726640/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.752 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.221 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.98 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.181 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146773 SAMN21406509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726659/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.908 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.18 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.851 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146774 SAMN21406508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726698/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.237 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.784 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.127 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146775 SAMN21406177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09726781/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.767 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.442 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.817 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.229 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146776 SAMN21406123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09727262/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.521 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.909 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.396 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146777 SAMN21406507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09726804/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.83 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.473 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.145 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146778 SAMN21406122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09727269/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.195 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.847 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.181 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146779 SAMN21406121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09727387/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.588 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.217 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.281 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146780 SAMN21406120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09727582/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.563 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.764 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.532 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146781 SAMN21406118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09727684/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.201 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.577 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.679 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.774 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146782 SAMN21406119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09727655/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.735 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.263 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.664 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.87 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146783 SAMN21406117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09729148/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.064 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.011 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.308 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146784 SAMN21406203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09729980/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.704 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.984 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.822 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.058 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146785 SAMN21406506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09737594/2021 collected_by Mako Medical collection_date 2021-08-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.882 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.292 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.22 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.754 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146786 SAMN21406153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09734262/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.881 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.809 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.888 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146787 SAMN21406142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09699091/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.411 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.627 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.524 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.264 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146788 SAMN21406135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB09699146/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.532 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.733 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.769 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146789 SAMN21406136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB09699131/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.804 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.019 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.374 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146790 SAMN21406603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09699350/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.276 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.719 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.476 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146791 SAMN21406376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09699694/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.417 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.859 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.173 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.295 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146792 SAMN21406375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09699901/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.462 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.97 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.643 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.097 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146793 SAMN21406602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09699957/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.467 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.466 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.778 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.965 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146794 SAMN21406374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09700021/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.935 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.203 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.965 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146795 SAMN21406373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09700117/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.071 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.64 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.106 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146796 SAMN21406601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09700164/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.611 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146797 SAMN21406600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09700287/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.138 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.131 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.574 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146798 SAMN21406134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09700961/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.509 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.706 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.55 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146799 SAMN21406166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09700847/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.953 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.918 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.99 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.298 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146800 SAMN21406372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09700974/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.091 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.764 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.905 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.756 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146801 SAMN21406599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09700983/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.773 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.889 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.261 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.203 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146802 SAMN21406597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09701215/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.915 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.365 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.02 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146803 SAMN21406596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09701251/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.46 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.405 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.294 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146804 SAMN21406598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09701138/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.562 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.182 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.459 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.269 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146805 SAMN21406595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09701358/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.97 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.39 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.095 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146806 SAMN21406165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09701478/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.449 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.689 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.089 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146807 SAMN21406133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09701331/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.681 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.009 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.708 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146808 SAMN21406594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09701679/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.866 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.978 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146809 SAMN21406593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09701964/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.769 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.282 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.945 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146810 SAMN21406591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09702214/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.245 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.203 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 1 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.671 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146811 SAMN21406592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09702109/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.613 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.648 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.869 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.125 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146812 SAMN21406590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09702256/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.611 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.78 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.758 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.301 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146813 SAMN21406132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09702714/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.201 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.545 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.051 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146814 SAMN21406164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09703244/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 98 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.505 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.429 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.504 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146815 SAMN21406163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09703672/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.061 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.75 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.008 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.59 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146816 SAMN21406162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09703895/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.78 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.635 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.772 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146817 SAMN21406161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09704137/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.59 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.211 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.53 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.939 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146818 SAMN21406141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09704447/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.542 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.117 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.636 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146819 SAMN21406131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09704911/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.983 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.131 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.799 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146820 SAMN21406160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09704890/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.298 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.233 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.168 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146821 SAMN21406371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705016/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.915 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.101 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.213 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146822 SAMN21406370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705311/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.604 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.278 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.682 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.576 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146823 SAMN21406369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705340/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.261 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.926 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.238 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146824 SAMN21406368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705432/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.786 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.334 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.841 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.107 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146825 SAMN21406367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705486/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.849 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.501 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146826 SAMN21406366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705504/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.359 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.144 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.171 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146827 SAMN21406365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705570/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.894 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.755 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.985 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146828 SAMN21406363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705678/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.18 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.938 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.286 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146829 SAMN21406364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705672/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.479 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.475 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.85 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146830 SAMN21406361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705977/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.006 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.905 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.171 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.233 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146831 SAMN21406362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09705687/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.864 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.089 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.706 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146832 SAMN21406190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB09705989/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.648 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.771 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.694 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146833 SAMN21406360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706000/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.169 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.735 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.226 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146834 SAMN21406359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706016/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.311 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.492 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.261 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146835 SAMN21406357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706183/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.452 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.005 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.813 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146836 SAMN21406358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706166/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.279 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.394 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.451 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.925 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146837 SAMN21406356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706192/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.404 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.017 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.005 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.532 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146838 SAMN21406355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706340/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.694 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.098 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.538 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.045 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146839 SAMN21406354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706350/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.189 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.851 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.274 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146840 SAMN21406352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706386/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.256 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.893 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.6 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.602 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146841 SAMN21406353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706379/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.429 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.864 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.581 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.09 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146842 SAMN21406351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706504/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.169 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.023 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.358 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146843 SAMN21406350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706508/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.098 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.005 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146844 SAMN21406349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706619/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.895 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.848 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146845 SAMN21406348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706771/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.097 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.843 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.701 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146846 SAMN21406347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09706828/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.58 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.639 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.813 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.541 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146847 SAMN21406346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707006/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.539 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.009 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.117 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146848 SAMN21406159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09707248/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.587 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.428 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.67 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.76 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146849 SAMN21406345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707283/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.833 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.787 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.611 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146850 SAMN21406344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707481/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.577 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.428 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.71 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146851 SAMN21406152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09743856/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.664 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.888 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.508 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146852 SAMN21406202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10069915/2021 collected_by Mako Medical collection_date 2021-08-17 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146853 SAMN21406201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10069996/2021 collected_by Mako Medical collection_date 2021-08-18 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146854 SAMN21406200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070006/2021 collected_by Mako Medical collection_date 2021-08-18 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146855 SAMN21406199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070019/2021 collected_by Mako Medical collection_date 2021-08-18 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146856 SAMN21406198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070063/2021 collected_by Mako Medical collection_date 2021-08-17 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146857 SAMN21406197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070083/2021 collected_by Mako Medical collection_date 2021-08-17 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146858 SAMN21406196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070111/2021 collected_by Mako Medical collection_date 2021-08-17 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146859 SAMN21406194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070173/2021 collected_by Mako Medical collection_date 2021-08-17 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146860 SAMN21406343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707744/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.032 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.857 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.031 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.614 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146861 SAMN21406342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707838/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.317 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.58 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.534 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.28 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146862 SAMN21406195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10070138/2021 collected_by Mako Medical collection_date 2021-08-17 isolation_source Mid-turbinate Nasal Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race UNK collection_device Mid-turbinate Nasal Swab collection_method Mid-turbinate Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 Unknown diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146863 SAMN21406341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707854/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.255 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.55 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.768 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146864 SAMN21406589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09707983/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.514 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.091 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.752 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146865 SAMN21406340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09707939/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.191 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.993 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.986 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146866 SAMN21406158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09707960/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.273 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.635 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.672 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.195 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146867 SAMN21406338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09708081/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.944 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.571 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.614 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146868 SAMN21406336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09708241/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.509 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.726 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.167 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146869 SAMN21406337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09708084/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.494 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.349 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.546 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.992 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146870 SAMN21406339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09708024/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.454 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.457 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.777 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146871 SAMN21406335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09708558/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.754 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.537 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.889 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146872 SAMN21406588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09708875/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.507 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.89 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.751 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.881 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146873 SAMN21406587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09708912/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.721 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.644 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.001 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146874 SAMN21406333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709071/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.808 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.309 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.542 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146875 SAMN21406334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09708967/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.798 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.355 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146876 SAMN21406157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09709093/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.919 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.417 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.46 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146877 SAMN21406586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09709142/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.849 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.717 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.296 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146878 SAMN21406332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709212/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.251 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.832 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.219 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.172 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146879 SAMN21406585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09709311/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.367 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.077 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.521 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.21 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146880 SAMN21406330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709388/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.614 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.24 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146881 SAMN21406329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709459/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.094 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.256 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.755 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.425 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146882 SAMN21406331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709372/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.393 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.036 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.566 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.931 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146883 SAMN21406328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709521/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.721 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.716 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.993 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146884 SAMN21406327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709526/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.927 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.774 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.055 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146885 SAMN21406130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09709530/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.126 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.933 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.32 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146886 SAMN21406324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709842/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.148 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.415 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.832 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146887 SAMN21406325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709772/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.669 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.613 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.697 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146888 SAMN21406326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09709754/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.229 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.828 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.18 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146889 SAMN21406322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710098/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.734 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.083 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.102 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146890 SAMN21406323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710081/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.057 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.54 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.297 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146891 SAMN21406321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710136/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.481 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.81 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.605 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146892 SAMN21406151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NE-CDC-MMB09710174/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.638 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.722 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.73 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146893 SAMN21406584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09710246/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.653 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.432 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.72 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146894 SAMN21406320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710297/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.988 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.359 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.655 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.382 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146895 SAMN21406319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710477/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.028 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.465 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.61 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146896 SAMN21406583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09710464/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.016 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.218 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.092 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146897 SAMN21406318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710627/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.68 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.58 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.482 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146898 SAMN21406582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09710656/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.821 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.026 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.893 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146899 SAMN21406317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710671/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.269 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.833 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146900 SAMN21406316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710692/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.831 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.889 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.19 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.951 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146901 SAMN21406315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710730/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.77 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.918 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.618 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146902 SAMN21406314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09710811/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.192 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.212 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.34 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.925 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146903 SAMN21406129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09711099/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.997 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.178 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.382 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146904 SAMN21406581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09710989/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.19 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.121 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.298 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146905 SAMN21406580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09711177/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.164 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.169 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.076 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146906 SAMN21406313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711105/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.507 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.844 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.9 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146907 SAMN21406312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711251/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.775 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.992 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146908 SAMN21406579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09711260/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.599 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.136 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146909 SAMN21406311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711363/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.682 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.246 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.679 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.349 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146910 SAMN21406310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711547/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.746 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.712 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.292 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146911 SAMN21406309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711567/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.455 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.561 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.871 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.51 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146912 SAMN21406308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711588/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.143 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.713 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.444 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146913 SAMN21406307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711705/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.242 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.146 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.663 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.001 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146914 SAMN21406578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09711648/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.553 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.103 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.09 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146915 SAMN21406306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711721/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.432 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.507 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.799 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.126 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146916 SAMN21406304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711876/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.815 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.469 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.836 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.67 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146917 SAMN21406305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711785/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.101 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.531 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.738 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146918 SAMN21406303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711922/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.384 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.068 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.974 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146919 SAMN21406302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09711932/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.99 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.098 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.117 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.81 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146920 SAMN21406577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712074/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.663 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.68 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.904 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146921 SAMN21406301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712203/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.83 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.563 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.681 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146922 SAMN21406576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712214/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.447 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.192 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146923 SAMN21406299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712332/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.481 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.504 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.8 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146924 SAMN21406298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712373/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.361 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.493 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.631 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.738 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146925 SAMN21406300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712235/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.622 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.035 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.736 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146926 SAMN21406575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712396/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.436 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.989 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.148 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146927 SAMN21406297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712428/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.489 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.153 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.549 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146928 SAMN21406156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09712430/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.289 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.283 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.361 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.551 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146929 SAMN21406128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB09712443/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.817 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.775 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.283 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146930 SAMN21406573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712510/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.899 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.262 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.215 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.508 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146931 SAMN21406574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712484/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.084 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.206 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.185 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.149 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146932 SAMN21406296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712529/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.051 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.542 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.233 lineage/clade name B.1.628 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146933 SAMN21406140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09712579/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.985 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.158 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.395 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146934 SAMN21406295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712614/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.623 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.742 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.978 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146935 SAMN21406572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712647/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.779 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.186 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.727 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146936 SAMN21406294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09712721/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.388 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.268 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.35 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.959 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146937 SAMN21406571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712673/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.104 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.807 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.346 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146938 SAMN21406570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712875/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.084 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.474 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.018 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.411 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146939 SAMN21406569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712915/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.534 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.055 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.616 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.386 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146940 SAMN21406568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09712972/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.37 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.713 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.519 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146941 SAMN21406292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713138/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.435 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.622 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146942 SAMN21406293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713018/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.766 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.307 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.74 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146943 SAMN21406291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713155/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.95 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.178 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.501 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146944 SAMN21406567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09713171/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.164 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.868 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.28 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146945 SAMN21406566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09713196/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.595 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.077 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.85 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146946 SAMN21406565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09713215/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.006 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.507 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.438 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.29 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146947 SAMN21406564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09713253/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.888 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.879 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146948 SAMN21406290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713242/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.697 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.399 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.723 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146949 SAMN21406563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09713313/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.21 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.961 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.736 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146950 SAMN21406289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713308/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.833 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.581 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146951 SAMN21406288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713320/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.32 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.348 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.545 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.895 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146952 SAMN21406287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713333/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.289 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.886 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.517 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.072 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146953 SAMN21406562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09713377/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.863 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.63 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.032 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.79 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146954 SAMN21406286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713529/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.043 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.28 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.567 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.327 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146955 SAMN21406285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713805/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.24 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.103 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.418 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146956 SAMN21406284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713907/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.971 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.698 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.947 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.72 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146957 SAMN21406146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09673375/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.533 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.17 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.49 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146958 SAMN21406484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09674698/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.222 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.153 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.779 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146959 SAMN21406485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09673868/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.986 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.52 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146960 SAMN21406145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB09675479/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.175 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.056 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146961 SAMN21406483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09675536/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.815 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.404 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.688 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146962 SAMN21406174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MT-CDC-MMB09676079/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.08 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.988 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146963 SAMN21406482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09678111/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.97 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.072 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.009 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146964 SAMN21406183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09682895/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.472 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.625 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.363 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146965 SAMN21406184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB09680502/2021 collected_by Mako Medical collection_date 2021-08-10 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.093 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.974 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.13 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.071 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146966 SAMN21406480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09684989/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.945 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.029 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.023 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146967 SAMN21406481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09684794/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.68 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.259 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.389 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.81 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146968 SAMN21406478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685032/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.365 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.521 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.852 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146969 SAMN21406479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685025/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.351 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.902 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.658 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146970 SAMN21406477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685160/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.927 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.072 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.577 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.33 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146971 SAMN21406476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685203/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.818 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.41 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.491 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146972 SAMN21406475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685218/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.248 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.146 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.148 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.296 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146973 SAMN21406474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685236/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.477 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.705 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146974 SAMN21406473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685294/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.446 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.965 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146975 SAMN21406472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685316/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.23 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.448 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.725 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146976 SAMN21406471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685436/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.59 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.572 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.812 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.151 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146977 SAMN21406138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB09685473/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.92 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.846 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.304 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.522 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146978 SAMN21406470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09685557/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.282 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.295 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.749 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.158 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146979 SAMN21406192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB09685983/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.507 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.343 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146980 SAMN21406469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686104/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.229 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.463 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.218 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.408 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146981 SAMN21406169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09686117/2021 collected_by Mako Medical collection_date 2021-08-09 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.464 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.386 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.802 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.421 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146982 SAMN21406468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686142/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.608 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.264 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.495 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146983 SAMN21406466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686230/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.853 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.895 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.372 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146984 SAMN21406465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686235/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.663 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.231 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.101 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146985 SAMN21406464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686360/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.882 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.306 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.087 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146986 SAMN21406467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686179/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.009 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.472 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.725 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146987 SAMN21406462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686504/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.65 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.901 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.971 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.388 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146988 SAMN21406283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09713980/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.808 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.431 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.767 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146989 SAMN21406463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09686389/2021 collected_by Mako Medical collection_date 2021-08-11 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.718 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.584 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146990 SAMN21406281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714089/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.438 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.194 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.862 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.431 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146991 SAMN21406280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714107/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.884 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.791 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.104 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.152 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146992 SAMN21406155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09714137/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.763 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.937 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.935 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146993 SAMN21406282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714065/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.693 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.117 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146994 SAMN21406279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714139/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.675 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.373 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.792 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.261 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146995 SAMN21406561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09714637/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.074 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.286 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.489 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.43 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146996 SAMN21406278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714662/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.02 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.755 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.412 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146997 SAMN21406277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714664/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.525 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.93 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.159 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.951 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146998 SAMN21406276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09714995/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.832 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.649 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.006 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10146999 SAMN21406275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715117/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.745 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.436 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.694 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147000 SAMN21406560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09714919/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.354 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.191 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.476 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147001 SAMN21406274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715194/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.193 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.744 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.386 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147002 SAMN21406272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715600/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.814 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.888 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.711 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.759 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147003 SAMN21406273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715367/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.123 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.215 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.853 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.67 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147004 SAMN21406271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715633/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.612 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.811 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.246 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.905 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147005 SAMN21406270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715798/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.377 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.303 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.594 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147006 SAMN21406269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715837/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.182 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.835 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.316 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147007 SAMN21406559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09715728/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.135 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.081 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.115 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.645 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147008 SAMN21406268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715856/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.757 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.411 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.961 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147009 SAMN21406267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09715919/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.884 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.738 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.745 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 39.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147010 SAMN21406558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09716240/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.067 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.538 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.071 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.846 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147011 SAMN21406266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716292/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.576 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.65 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.914 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.807 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147012 SAMN21406265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716335/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.682 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.446 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.961 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147013 SAMN21406557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB09716504/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.57 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.243 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.792 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147014 SAMN21406154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB09716488/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.678 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.058 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.616 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.24 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147015 SAMN21406263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716655/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.153 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.659 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.342 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.31 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147016 SAMN21406264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716525/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.146 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.028 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.285 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.144 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147017 SAMN21406262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716667/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.52 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.398 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.447 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.119 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147018 SAMN21406261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716692/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.754 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.76 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.984 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147019 SAMN21406260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716703/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.712 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.125 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.549 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.515 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10147020 SAMN21406259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB09716728/2021 collected_by Mako Medical collection_date 2021-08-12 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.087 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.543 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.071 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.794 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated