SRX12192127 R1_9 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169826 CH_young_leaf R1_9 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192128 R2_9 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169826 CH_young_leaf R2_9 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192129 R2_13 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169827 CH_mature_shoot R2_13 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192130 R3_13 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169827 CH_mature_shoot R3_13 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192131 R1_2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169828 CH_closed_flower R1_2 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192132 R2_2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169828 CH_closed_flower R2_2 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192133 R3_2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169828 CH_closed_flower R3_2 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192134 R1_1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169829 CH_open_flower R1_1 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192135 R2_1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169829 CH_open_flower R2_1 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192136 R3_1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169829 CH_open_flower R3_1 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192137 R1_11 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169830 CH_root R1_11 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192138 R2_11 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169830 CH_root R2_11 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192139 R3_9 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169826 CH_young_leaf R3_9 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192140 R3_11 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169830 CH_root R3_11 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192141 R1_6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169831 CH_stage2_fruit R1_6 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192142 R2_6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169831 CH_stage2_fruit R2_6 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192143 R3_6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169831 CH_stage2_fruit R3_6 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192144 R1_3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169832 CH_stage2_endocarp R1_3 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192145 R2_3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169832 CH_stage2_endocarp R2_3 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192146 R3_3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169832 CH_stage2_endocarp R3_3 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192147 R1_7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169833 CH_stage3_fruit R1_7 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192148 R2_7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169833 CH_stage3_fruit R2_7 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192149 R3_7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169833 CH_stage3_fruit R3_7 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192150 R1_14 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169834 CH_young_shoot R1_14 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192151 R1_4 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169835 CH_stage3_endocarp R1_4 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192152 R2_4 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169835 CH_stage3_endocarp R2_4 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192153 R3_4 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169835 CH_stage3_endocarp R3_4 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192154 R1_8 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169836 CH_stage4_fruit R1_8 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192155 R2_8 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169836 CH_stage4_fruit R2_8 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192156 R3_8 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169836 CH_stage4_fruit R3_8 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192157 R1_5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169837 CH_stage4_endocarp R1_5 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192158 R2_5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169837 CH_stage4_endocarp R2_5 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192159 R3_5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169837 CH_stage4_endocarp R3_5 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192160 R1_10 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169838 CH_stage4_stalk R1_10 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192161 R2_14 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169834 CH_young_shoot R2_14 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192162 R2_10 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169838 CH_stage4_stalk R2_10 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192163 R3_10 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169838 CH_stage4_stalk R3_10 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192164 Neb6609_A1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169839 KO_young_leaf Neb6609_A1 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192165 Neb6609_A2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169839 KO_young_leaf Neb6609_A2 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192166 Neb6609_A3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169839 KO_young_leaf Neb6609_A3 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192167 Neb6609_A4 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169840 KO_young_shoot Neb6609_A4 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192168 Neb6609_A5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169840 KO_young_shoot Neb6609_A5 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192169 Neb6609_A6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169840 KO_young_shoot Neb6609_A6 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192170 Neb6609_A7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169841 KO_mature_leaf Neb6609_A7 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192171 Neb6609_A8 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169841 KO_mature_leaf Neb6609_A8 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192172 R3_14 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169834 CH_young_shoot R3_14 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192173 Neb6609_A9 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169841 KO_mature_leaf Neb6609_A9 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192174 Neb6609_A10 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169842 KO_mature_shoot Neb6609_A10 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192175 Neb6609_A11 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169842 KO_mature_shoot Neb6609_A11 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192176 Neb6609_A12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169842 KO_mature_shoot Neb6609_A12 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192177 Neb6609_1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169843 KO_closed_flower Neb6609_1 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192178 Neb6609_2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169843 KO_closed_flower Neb6609_2 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192179 Neb6609_3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169843 KO_closed_flower Neb6609_3 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192180 Neb6609_4 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169844 KO_open_flower Neb6609_4 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192181 Neb6609_5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169844 KO_open_flower Neb6609_5 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192182 Neb6609_6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169844 KO_open_flower Neb6609_6 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192183 R1_12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169846 CH_mature_leaf R1_12 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192184 Neb6609_7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169845 KO_root Neb6609_7 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192185 Neb6609_8 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169845 KO_root Neb6609_8 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192186 Neb6609_9 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169845 KO_root Neb6609_9 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192187 Neb6609_10 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169847 KO_stage2_fruit Neb6609_10 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192188 Neb6609_11 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169847 KO_stage2_fruit Neb6609_11 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192189 Neb6609_12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169847 KO_stage2_fruit Neb6609_12 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192190 NNeb6609_C1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169848 KO_stage2_endocarp NNeb6609_C1 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192191 Neb6609_C2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169848 KO_stage2_endocarp Neb6609_C2 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192192 Neb6609_C3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169848 KO_stage2_endocarp Neb6609_C3 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192193 Neb6609_C4 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169849 KO_stage3_fruit Neb6609_C4 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192194 R2_12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169846 CH_mature_leaf R2_12 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192195 Neb6609_C5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169849 KO_stage3_fruit Neb6609_C5 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192196 Neb6609_C6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169849 KO_stage3_fruit Neb6609_C6 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192197 Neb6609_C7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169850 KO_stage3_endocarp Neb6609_C7 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192198 Neb6609_C8 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169850 KO_stage3_endocarp Neb6609_C8 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192199 Neb6609_C9 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169850 KO_stage3_endocarp Neb6609_C9 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192200 E2 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169851 KO_stage4_fruit E2 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192201 E3 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169851 KO_stage4_fruit E3 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192202 E5 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169851 KO_stage4_fruit E5 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192203 E6 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169852 KO_stage4_endocarp E6 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192204 E7 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169852 KO_stage4_endocarp E7 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192205 R3_12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169846 CH_mature_leaf R3_12 RNA-Seq TRANSCRIPTOMIC other NextSeq 550 SRX12192206 E11 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169852 KO_stage4_endocarp E11 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192207 E12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169853 KO_stage4_stalk E12 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192208 D1 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169853 KO_stage4_stalk D1 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192209 F12 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Koroneiki" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the NEBNext Multiplex Oligos for Illumina kit (NEB, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the Qubit dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 2100 Bioanalyzer (Agilent Technology Inc., CA, USA) using the Agilent High sensitivity DNA kit and the NEBnext library quant for Illumina kit ((NEB, Ipswich, MA, USA). Sequencing was performed in the NextSeq500 platform (Illumina, San Diego, CA, USA), using the NextSeq 500/550 High Output Kit v2.5 (300 Cycles), paired-end, 2x150 bp. SRS10169853 KO_stage4_stalk F12 RNA-Seq TRANSCRIPTOMIC other NextSeq 500 SRX12192210 R1_13 SRP337118 bp0 Total RNA was extracted from fresh tissue material for 14 tissue types of the olive variety "Chondrolia Chalkidikis" in three biological replicates, using the Monarch Total RNA Miniprep Kit (NEB, Ipswich, MA, USA). The biological replicates per tissue type were equimolarly mixed in 2 g final RNA pools. The RNA libraries were prepared using the NeBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB, Ipswich, MA, USA) and library indexing was performed using the EBNext Multiplex Oligos for Illumina (Set 1 and 2) kit (, Ipswich, MA, USA), according to the manufacturers instructions. RNA library quantity and quality were assessed using the QubitTM dsDNA HS Assay Kit (Invitrogen, Oregon, USA), the 5200 Fragment Analyzer (Agilent Technology Inc., CA, USA) according to DNF-473-33 - SS NGS Fragment 1-6000bp protocol, and the KAPA library Quantification kit (KAPA Biosystems, Cape Town, South Africa). SRS10169827 CH_mature_shoot R1_13 RNA-Seq TRANSCRIPTOMIC other NextSeq 550