<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX12198641" alias="ACHN-1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198641</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">ACHN-1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of human ccRCC: ACHN-VHL+</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>ACHN-VHL+ cells were the geniune cell line of ACHN from ATCC with crispr/cas9 vehicle control</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174990">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174990</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">ACHN-VHL+_bulk_RNAseq</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>ACHN-1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198642" alias="ACHN-2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198642</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">ACHN-2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of human ccRCC: ACHN-VHL-</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>ACHN-VHL- cells were made by crispr/cas9 mediated knockout of VHL on the basis of ACHN-VHL+ cells</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174992">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174992</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">ACHN-VHL-_bulk_RNAseq</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>ACHN-2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198643" alias="WES-loci-1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198643</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">WES-loci-1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WES of human ccRCC: #22, loci 1</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>It's the primary tumor sample from the patient #22 in table 1 of the manuscript and it's one piece of the tumor, labeled as loci 1.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174993">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174993</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">WES_#22_loci_1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WES-loci-1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198644" alias="WES-loci-2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198644</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">WES-loci-2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WES of human ccRCC: #22, loci 2</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>It's the primary tumor sample from the patient #22 in table 1 of the manuscript and it's one piece of the tumor, labeled as loci 2.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174991">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174991</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">WES_#22_loci_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WES-loci-2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198645" alias="WES-loci-3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198645</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">WES-loci-3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WES of human ccRCC: #22, loci 3</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>It's the primary tumor sample from the patient #22 in table 1 of the manuscript and it's one piece of the tumor, labeled as loci 3.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174994">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174994</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">WES_#22_loci_3</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WES-loci-3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198646" alias="WES-loci-4">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198646</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">WES-loci-4</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WES of human ccRCC: #22, loci 4</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>It's the primary tumor sample from the patient #22 in table 1 of the manuscript and it's one piece of the tumor, labeled as loci 4</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174995">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174995</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">WES_#22_loci_4</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WES-loci-4</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198647" alias="WES-cells">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198647</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">WES-cells</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WES of human ccRCC: #22, cells, VHL+</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>It's the primary tumor sample derived cell line of patient #22 in table 1 of the manuscript and was sent for Whole exome sequencing</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174996">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174996</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">WES_#22_primary_tumor_derived_cells</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WES-cells</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198648" alias="WES-cells-ko">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198648</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">WES-cells-ko</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WES of human ccRCC: #22, cells, VHL-</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>it's the crispr/cas9 mediated knockout of VHL cell line based on the primary cell line from patient #22</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174997">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174997</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">WES_#22_primary_tumor_derived_cells_VHL-</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WES-cells-ko</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WXS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198649" alias="scRNAseq-cells">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198649</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">scRNAseq-cells</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>single cell RNAseq of human ccRCC: #22, cells</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The primary cell line from patient #22 in table 1 from the manuscript and it was sent for single cell sequencing.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174998">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174998</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">scRNAseq_#22_primary_tumor_derived_cells</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>scRNAseq-cells</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC SINGLE CELL</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12198650" alias="sc-nucRNAseq-tissue">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12198650</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10364666">sc-nucRNAseq-tissue</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>single cell nuclear RNAseq of human ccRCC: #22, tissue</TITLE>
    <STUDY_REF accession="SRP337263">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP337263</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB10364666">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The digested tissue nuclei from the frozen stock of primary tumor from patient #22 in table 1 of the manuscript. It was sent for single cell nuclei RNAseq.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10174999">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10174999</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|danielhelix@gmail.com">sc-nucRNAseq_#22_primary_tumor</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>sc-nucRNAseq-tissue</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC SINGLE CELL</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
