SRS10538766 SAMN22234767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29167934/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.78 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538767 SAMN22234817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29167935/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538768 SAMN22234816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29167936/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538769 SAMN22234815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29167937/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538770 SAMN22234733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29167938/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-18 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.55 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538771 SAMN22234882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX29167939/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.78 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538772 SAMN22234969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29167940/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24.32 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538773 SAMN22235091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29167941/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.35 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538775 SAMN22234792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX29167943/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.62 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538774 SAMN22235090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29167942/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.63 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538781 SAMN22235084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ID-CDC-QDX29167949/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538765 SAMN22234768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29167933/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538783 SAMN22234814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29167951/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.59 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538764 SAMN22234883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX29167931/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538785 SAMN22234858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167962/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.31 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538763 SAMN22234787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/UT-CDC-QDX29167930/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.89 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538787 SAMN22234856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167980/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.71 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538762 SAMN22234769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29167929/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.37 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538789 SAMN22235087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/HI-CDC-QDX29168021/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538761 SAMN22234770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29167928/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.55 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538791 SAMN22234994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168038/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538760 SAMN22234818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29167927/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.88 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538793 SAMN22234992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168052/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538759 SAMN22234819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29167926/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.02 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538795 SAMN22234990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168074/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538758 SAMN22235085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ID-CDC-QDX29167925/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.54 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538797 SAMN22234988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168095/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538757 SAMN22235092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29167922/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.63 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538799 SAMN22234986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168112/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538756 SAMN22235093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29167921/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.75 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538801 SAMN22234854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29168185/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538747 SAMN22234864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167845/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.47 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538748 SAMN22234863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167849/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.28 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538749 SAMN22234862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167850/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.93 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538750 SAMN22234861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167851/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.88 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538751 SAMN22234860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167853/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538752 SAMN22234859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167854/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.91 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538753 SAMN22234996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29167917/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.49 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538754 SAMN22235094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29167918/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538755 SAMN22234788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/UT-CDC-QDX29167920/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-17 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538776 SAMN22234766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29167944/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.49 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538777 SAMN22234765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29167945/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.71 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538778 SAMN22235194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX29167946/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.18 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538779 SAMN22235089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29167947/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.07 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538780 SAMN22234732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29167948/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.6 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538782 SAMN22235083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ID-CDC-QDX29167950/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 10.09 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538784 SAMN22234884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MS-CDC-QDX29167952/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538786 SAMN22234857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX29167963/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.92 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538788 SAMN22235261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29167984/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538790 SAMN22234995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168035/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538792 SAMN22234993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168039/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538794 SAMN22234991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168067/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538796 SAMN22234989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168082/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538798 SAMN22234987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX29168111/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538800 SAMN22234855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29168177/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538802 SAMN22234853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29168205/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538803 SAMN22234841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29168212/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538804 SAMN22234795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX29168217/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538805 SAMN22234840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29168220/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.41 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538806 SAMN22234839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29168225/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538807 SAMN22234852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29168247/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538808 SAMN22234838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29168262/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538809 SAMN22234837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29168267/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538810 SAMN22234836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29168269/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538811 SAMN22235260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168278/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538812 SAMN22235259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168280/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538813 SAMN22235258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168285/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538814 SAMN22235257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168286/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538815 SAMN22235256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168290/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538817 SAMN22235254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168316/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538819 SAMN22234984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29168336/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.5943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538821 SAMN22234961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29168440/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538823 SAMN22234968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213297/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.98 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538825 SAMN22234786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213299/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.72 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538827 SAMN22234784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213302/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.53 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538829 SAMN22234965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213304/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.33 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538831 SAMN22234783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213306/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538833 SAMN22234781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213310/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.52 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538835 SAMN22234779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213312/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.96 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538837 SAMN22234777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213314/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.61 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538839 SAMN22234775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213317/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.6 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538841 SAMN22234773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213319/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.73 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538843 SAMN22234962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213328/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538845 SAMN22234866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX29213337/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538847 SAMN22235082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213356/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538849 SAMN22235080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213358/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.63 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538851 SAMN22235078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213360/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538853 SAMN22234791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX29213363/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.78 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538855 SAMN22235253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213365/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538857 SAMN22235075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213367/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.69 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538859 SAMN22235073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213369/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.22 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538861 SAMN22235252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213372/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538863 SAMN22235250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213374/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.47 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538816 SAMN22235255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29168291/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538818 SAMN22234985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29168333/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.7205 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538820 SAMN22235193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29168360/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.1442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538822 SAMN22235088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX29213293/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538824 SAMN22234967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213298/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.57 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538826 SAMN22234785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213300/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538828 SAMN22234966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213303/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.49 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538830 SAMN22234964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213305/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.81 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538832 SAMN22234782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213307/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538834 SAMN22234780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213311/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.3 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538836 SAMN22234778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213313/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.62 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538838 SAMN22234776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213316/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.74 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538840 SAMN22234774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX29213318/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.62 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538842 SAMN22234963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX29213323/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538844 SAMN22234835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213329/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.15 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538846 SAMN22234865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX29213350/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538848 SAMN22235081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213357/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.84 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538850 SAMN22235079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213359/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538852 SAMN22235077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213361/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.79 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538854 SAMN22234790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX29213364/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 9.16 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538856 SAMN22235076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213366/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.84 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538858 SAMN22235074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213368/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.53 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538860 SAMN22235072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213370/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.35 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538862 SAMN22235251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213373/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12.74 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538864 SAMN22235249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213375/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.13 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538865 SAMN22235248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213376/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.69 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538866 SAMN22235247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213378/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.83 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538867 SAMN22235246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213379/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.87 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538868 SAMN22235245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213380/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.87 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538869 SAMN22235244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213381/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.92 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538870 SAMN22235243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213382/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.91 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538871 SAMN22235242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213383/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.67 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538872 SAMN22235241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213384/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.79 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538873 SAMN22235240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213385/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 11.13 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538874 SAMN22235239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213386/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.67 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538875 SAMN22235238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213387/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.52 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538876 SAMN22235237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213389/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538877 SAMN22235236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213390/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.54 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538878 SAMN22235235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213391/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.14 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538879 SAMN22235234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213392/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.08 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538880 SAMN22235233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213394/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.75 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538881 SAMN22235232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213395/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12.59 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538882 SAMN22235229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213398/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538883 SAMN22235230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213397/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12.52 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538884 SAMN22235231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213396/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.56 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538885 SAMN22235228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213399/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.03 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538886 SAMN22235227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213400/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.99 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538887 SAMN22235226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213401/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.08 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538888 SAMN22235225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213402/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.11 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538889 SAMN22235223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213404/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538890 SAMN22235224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213403/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.65 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538891 SAMN22235222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213405/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.49 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538892 SAMN22235221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213406/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538893 SAMN22235220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213407/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538894 SAMN22235219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213408/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.65 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538895 SAMN22235217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213411/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.69 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538896 SAMN22235216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213412/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.41 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538897 SAMN22235218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213410/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.92 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538898 SAMN22235215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213413/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.44 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538899 SAMN22235214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213414/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22.92 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538900 SAMN22235212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213416/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.45 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538901 SAMN22235213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213415/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24.85 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538902 SAMN22235211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213424/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538903 SAMN22235210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213440/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538904 SAMN22235209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213462/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538905 SAMN22235208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213469/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538906 SAMN22235207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213473/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538907 SAMN22235206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213484/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538909 SAMN22235204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213514/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538910 SAMN22235203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213522/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538911 SAMN22235202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213523/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538912 SAMN22235200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213541/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538913 SAMN22235199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213543/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538914 SAMN22235201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213529/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538915 SAMN22235198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213544/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538916 SAMN22235197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213545/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538917 SAMN22235195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213554/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538918 SAMN22235196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213548/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538919 SAMN22235016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX29213569/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.84 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538920 SAMN22234891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213570/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538921 SAMN22234890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213572/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.36 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538922 SAMN22234889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213573/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.49 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538923 SAMN22234888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213576/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.32 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538924 SAMN22235015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX29213577/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538925 SAMN22234887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213583/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538926 SAMN22234886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213584/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538927 SAMN22235014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX29213592/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538928 SAMN22234885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX29213588/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538929 SAMN22235013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX29213593/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.56 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538930 SAMN22235012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX29213594/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.7 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538931 SAMN22235011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX29213595/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.84 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538932 SAMN22234880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NE-CDC-QDX29213599/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 12.97 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538933 SAMN22234881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NE-CDC-QDX29213597/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538934 SAMN22235314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX29213601/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538935 SAMN22235313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX29213602/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538936 SAMN22234822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OK-CDC-QDX29213605/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538937 SAMN22235312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX29213604/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.34 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538938 SAMN22235311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX29213609/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538939 SAMN22234821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OK-CDC-QDX29213610/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538941 SAMN22235310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX29213614/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.49 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538943 SAMN22234812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213622/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538945 SAMN22234810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213624/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538947 SAMN22234763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213629/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538949 SAMN22234761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213631/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538951 SAMN22234809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213633/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-19 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538953 SAMN22234807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213637/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538955 SAMN22234804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213640/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538957 SAMN22234805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213639/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538959 SAMN22234758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213643/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538961 SAMN22234756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213646/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538963 SAMN22234755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213647/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538965 SAMN22234751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213653/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538967 SAMN22234750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213654/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538969 SAMN22234748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213656/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538971 SAMN22234802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213659/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538973 SAMN22234746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213661/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538975 SAMN22234745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213670/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538977 SAMN22234743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213672/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538979 SAMN22234799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213675/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538981 SAMN22234798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213676/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538983 SAMN22234740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213679/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538984 SAMN22234739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213680/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538985 SAMN22234738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213682/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538987 SAMN22234737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213683/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538908 SAMN22235205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX29213513/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538940 SAMN22235309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX29213617/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.26 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538942 SAMN22234813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213620/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538944 SAMN22234764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213625/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538946 SAMN22234811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213623/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-21 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538948 SAMN22234762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213630/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538950 SAMN22234760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213632/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538952 SAMN22234808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213634/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538954 SAMN22234806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213638/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538956 SAMN22234759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213641/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538958 SAMN22234803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213642/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538960 SAMN22234757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213645/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538962 SAMN22234754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213648/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538964 SAMN22234753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213650/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538966 SAMN22234752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213651/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538968 SAMN22234749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213655/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538970 SAMN22234747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213657/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538972 SAMN22234801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213667/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538974 SAMN22234800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213668/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538976 SAMN22234744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213671/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538978 SAMN22234742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213673/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538980 SAMN22234741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213674/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538982 SAMN22234797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213678/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538986 SAMN22234796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OR-CDC-QDX29213681/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538988 SAMN22234736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213685/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538989 SAMN22234734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213688/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538990 SAMN22235320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AK-CDC-QDX29213690/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538991 SAMN22234735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX29213686/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538992 SAMN22235319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AK-CDC-QDX29213691/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538993 SAMN22235318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AK-CDC-QDX29213692/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538994 SAMN22235316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AK-CDC-QDX29213694/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538995 SAMN22235317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AK-CDC-QDX29213693/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538996 SAMN22235315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AK-CDC-QDX29213696/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538997 SAMN22234834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213699/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538998 SAMN22234833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213700/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10538999 SAMN22234832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213701/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539000 SAMN22234831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213702/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539001 SAMN22234830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213703/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539002 SAMN22234850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213715/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539003 SAMN22234851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213713/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539004 SAMN22234849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213716/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539005 SAMN22234848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213717/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539006 SAMN22234847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213718/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539007 SAMN22234794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX29213720/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539008 SAMN22234829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213726/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539009 SAMN22234828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213727/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539010 SAMN22234827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213728/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539011 SAMN22234825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213731/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539012 SAMN22234826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213730/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539013 SAMN22234824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29213732/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539014 SAMN22234846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213734/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539015 SAMN22234845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213735/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539016 SAMN22234843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213737/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539017 SAMN22234844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29213736/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539018 SAMN22234793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX29213741/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539019 SAMN22234713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29213800/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.38 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539020 SAMN22234731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213802/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539021 SAMN22234730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213803/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539022 SAMN22234729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213805/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539023 SAMN22235071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213812/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539024 SAMN22235070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213815/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539025 SAMN22234728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213813/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539026 SAMN22235069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213817/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539027 SAMN22235068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213821/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539028 SAMN22234727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213827/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539029 SAMN22234923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213834/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539030 SAMN22234922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213835/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539031 SAMN22234726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213837/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539032 SAMN22234725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213840/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539033 SAMN22235067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213844/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.52 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539034 SAMN22234724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29213842/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539035 SAMN22234921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213848/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.39 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539036 SAMN22234920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213849/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.29 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539037 SAMN22234918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213854/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.44 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539038 SAMN22234919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213852/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539039 SAMN22234917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213856/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.98 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539040 SAMN22234916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213857/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539041 SAMN22235066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213859/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.46 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539042 SAMN22235065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213863/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.8 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539043 SAMN22234915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213860/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539044 SAMN22235064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213865/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.98 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539045 SAMN22234914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213867/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539046 SAMN22234913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213870/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.26 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539047 SAMN22235063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213872/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539048 SAMN22235062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213875/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.45 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539049 SAMN22234912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213881/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.31 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539050 SAMN22234911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213882/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.79 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539051 SAMN22234910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213883/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539052 SAMN22234909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213887/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.98 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539053 SAMN22234908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213888/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539054 SAMN22235060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213900/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.62 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539055 SAMN22235061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213893/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539056 SAMN22234954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213904/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.05 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539057 SAMN22234952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213906/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.61 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539058 SAMN22234953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213905/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.51 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539059 SAMN22234951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213907/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.78 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539060 SAMN22234950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213909/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.77 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539061 SAMN22234949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213911/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.19 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539062 SAMN22234948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213916/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539063 SAMN22234907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213918/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.85 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539064 SAMN22234947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213917/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.56 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539065 SAMN22234906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29213919/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.28 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539066 SAMN22234946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213920/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.31 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539067 SAMN22234945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213921/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539068 SAMN22234944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213923/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539069 SAMN22234942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213932/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539070 SAMN22234943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213924/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.43 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539071 SAMN22234941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213939/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539072 SAMN22235027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213943/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539073 SAMN22235026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213944/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.88 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539074 SAMN22235025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213945/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539075 SAMN22235059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213946/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539076 SAMN22235058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29213947/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.01 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539077 SAMN22235024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213948/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539078 SAMN22234940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213950/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.76 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539079 SAMN22235023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213949/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539080 SAMN22234939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29213951/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539081 SAMN22235022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213959/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.03 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539082 SAMN22235021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29213960/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.33 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539083 SAMN22235308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29255961/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539084 SAMN22235306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29255967/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539085 SAMN22235305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29255984/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539086 SAMN22235304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29255992/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539087 SAMN22235307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29255966/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539088 SAMN22235303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256025/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539089 SAMN22235302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256049/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539090 SAMN22235301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256056/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539091 SAMN22235300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256061/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539092 SAMN22235299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256063/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539093 SAMN22235297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256093/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539094 SAMN22235298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256077/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539095 SAMN22235296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256112/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539096 SAMN22235295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256125/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539097 SAMN22235292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256174/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539098 SAMN22235294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256137/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539099 SAMN22235293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256140/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539100 SAMN22235291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256236/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539101 SAMN22235289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256324/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539102 SAMN22235290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256252/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539103 SAMN22235288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256600/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539104 SAMN22235287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256602/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539105 SAMN22235286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256634/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539106 SAMN22235285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256682/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539107 SAMN22235284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256769/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539108 SAMN22235283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256797/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539109 SAMN22235282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256846/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539110 SAMN22235281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256856/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539111 SAMN22235280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256923/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539112 SAMN22235279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256936/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539113 SAMN22235278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256939/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539114 SAMN22235276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256948/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539115 SAMN22235275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257036/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539116 SAMN22235277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29256944/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539117 SAMN22235274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257097/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539118 SAMN22235273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257103/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539119 SAMN22235272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257654/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539120 SAMN22235271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257661/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539121 SAMN22235270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257713/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539122 SAMN22235268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257731/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539123 SAMN22235269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257717/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539124 SAMN22235267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257732/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539125 SAMN22235266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257744/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539126 SAMN22235265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257747/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539127 SAMN22235264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257825/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539128 SAMN22235263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29257863/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539129 SAMN22235010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260153/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.27 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539130 SAMN22235009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260154/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539131 SAMN22235008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260155/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.33 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539132 SAMN22235005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260158/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.06 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539133 SAMN22235006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260157/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.1 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539134 SAMN22235007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260156/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.78 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539135 SAMN22235004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260159/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539136 SAMN22235003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260160/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.78 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539137 SAMN22235001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260162/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.02 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539138 SAMN22235002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260161/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.08 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539139 SAMN22235177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260228/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.05 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539140 SAMN22235000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260164/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.8 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539141 SAMN22235176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260229/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.19 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539142 SAMN22235175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260230/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.97 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539143 SAMN22235174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260231/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.01 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539144 SAMN22235173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260232/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539145 SAMN22235172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260234/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.04 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539146 SAMN22235170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260236/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.82 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539147 SAMN22235171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260235/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.63 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539148 SAMN22235169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260237/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 17.56 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539149 SAMN22235167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260239/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.15 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539150 SAMN22235168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260238/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.63 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539151 SAMN22235166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260240/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539152 SAMN22235165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260241/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539153 SAMN22235164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260243/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.75 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539154 SAMN22235163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260244/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.5 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539155 SAMN22235162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260245/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539156 SAMN22235161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260246/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539157 SAMN22235160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260247/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.08 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539158 SAMN22235159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260248/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.8 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539159 SAMN22235158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260249/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.95 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539160 SAMN22235157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260250/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.98 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539161 SAMN22235155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260257/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539162 SAMN22235156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260256/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.92 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539163 SAMN22235154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260258/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.8 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539164 SAMN22235153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260265/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.73 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539165 SAMN22235150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260277/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539166 SAMN22235151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260273/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.44 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539167 SAMN22235152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260272/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.5 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539168 SAMN22235149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260278/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539169 SAMN22235147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260280/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.11 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539170 SAMN22235148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260279/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539171 SAMN22235146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260284/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.93 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539172 SAMN22235145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260289/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.47 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539173 SAMN22235144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260290/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539174 SAMN22235143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260291/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.08 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539175 SAMN22235141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260293/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.42 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539177 SAMN22235140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260294/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.25 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539178 SAMN22235139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260295/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.78 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539179 SAMN22235138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260296/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.56 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539180 SAMN22235137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260297/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.75 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539181 SAMN22235136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260298/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539182 SAMN22235135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260300/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.46 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539183 SAMN22235134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260302/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.48 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539184 SAMN22235133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260304/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.1 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539185 SAMN22235132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260305/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.02 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539186 SAMN22235131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260308/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.67 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539187 SAMN22235129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260315/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.83 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539188 SAMN22235130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260309/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.29 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539189 SAMN22235127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260317/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.67 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539191 SAMN22235128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260316/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.08 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539193 SAMN22235124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260323/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.32 lineage/clade name AY.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539195 SAMN22235123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260324/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539197 SAMN22235121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260326/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.07 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539199 SAMN22235119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260328/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.81 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539201 SAMN22235116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260334/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539203 SAMN22235114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260336/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.61 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539205 SAMN22235112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260338/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.4 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539207 SAMN22235110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260340/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539209 SAMN22235109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260341/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539211 SAMN22234820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OK-CDC-QDX29260351/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.73 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539213 SAMN22235105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260355/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539215 SAMN22235103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260360/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.09 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539217 SAMN22235101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260362/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539219 SAMN22234823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX29260363/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.27 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539221 SAMN22235100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260366/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.58 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539223 SAMN22235099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260368/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.58 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539225 SAMN22235096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260373/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.88 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539227 SAMN22234960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29260385/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.7545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539229 SAMN22234959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29260390/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.0265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539231 SAMN22235189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260408/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.0757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539233 SAMN22235188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260415/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.3954 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539235 SAMN22235187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260419/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 12.1779 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539176 SAMN22235142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260292/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539190 SAMN22235126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260321/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.82 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539192 SAMN22235125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260322/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.53 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539194 SAMN22235122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260325/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539196 SAMN22235120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260327/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.92 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539198 SAMN22235117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260330/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.16 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539200 SAMN22235118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260329/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.48 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539202 SAMN22235115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260335/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.67 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539204 SAMN22235113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260337/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.46 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539206 SAMN22235111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260339/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.78 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539208 SAMN22235108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260344/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539210 SAMN22235107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260350/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539212 SAMN22235106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260354/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.79 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539214 SAMN22235104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260358/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.48 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539216 SAMN22235102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260361/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539218 SAMN22235262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX29260364/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539220 SAMN22235020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29260365/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.84 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539222 SAMN22235098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260369/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539224 SAMN22235097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260372/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539226 SAMN22235192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260378/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.2509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539228 SAMN22235191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260403/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.5884 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539230 SAMN22235190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260406/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.443 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539232 SAMN22234983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260413/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.9671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539234 SAMN22234982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260416/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24.257 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539236 SAMN22234879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260417/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.1931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539237 SAMN22234981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260423/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.0644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539238 SAMN22235186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260427/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.4374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539239 SAMN22235184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260431/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.4273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539240 SAMN22235185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260428/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24.2521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539241 SAMN22235183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260436/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.5681 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539242 SAMN22235182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260438/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.1482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539243 SAMN22234980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260440/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.3253 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539244 SAMN22234878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260441/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.6582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539245 SAMN22234876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260445/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.0358 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539246 SAMN22234877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260443/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.8758 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539247 SAMN22234875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260446/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.2568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539248 SAMN22234874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260447/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.7665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539249 SAMN22234873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260450/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.5216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539250 SAMN22234872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260451/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 11.5743 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539251 SAMN22234871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260452/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.9153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539252 SAMN22234772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VT-CDC-QDX29260457/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.2346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539253 SAMN22235178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/DC-CDC-QDX29260455/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.1404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539254 SAMN22234771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VT-CDC-QDX29260459/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.6856 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539255 SAMN22234870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260458/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.9202 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539256 SAMN22234842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX29260470/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.5352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539257 SAMN22234789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX29260474/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.3209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539258 SAMN22234979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260475/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.4877 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539259 SAMN22234978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260477/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20.2597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539260 SAMN22234977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260479/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539261 SAMN22234975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260484/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23.4563 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539262 SAMN22234976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260483/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.3927 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539263 SAMN22234974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260486/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14.2207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539264 SAMN22234972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260490/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.8116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539265 SAMN22234973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260487/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.9481 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539266 SAMN22234869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260491/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.93 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539267 SAMN22234971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260492/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539268 SAMN22235095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX29260496/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.9916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539269 SAMN22235181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260497/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.1792 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539270 SAMN22234970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX29260495/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.99 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539271 SAMN22234868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260498/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.8932 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539272 SAMN22235180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260500/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.29 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539273 SAMN22235179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX29260501/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.2059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539274 SAMN22234958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29260502/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21.1374 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539275 SAMN22234956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29260504/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.0385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539276 SAMN22234957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29260503/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 11.5302 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539277 SAMN22234867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NH-CDC-QDX29260505/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.9898 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539278 SAMN22234955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/ME-CDC-QDX29260506/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13.6328 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539279 SAMN22234711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260534/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.31 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539280 SAMN22234712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260518/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.96 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539281 SAMN22235086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IA-CDC-QDX29260536/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.58 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539282 SAMN22234709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260542/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539283 SAMN22234708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260544/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.69 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539284 SAMN22234710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260540/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.32 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539285 SAMN22234706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260547/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.75 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539286 SAMN22234707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260545/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.61 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539287 SAMN22234705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260549/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539288 SAMN22234702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260553/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.32 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539289 SAMN22234704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260550/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.74 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539290 SAMN22234701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260554/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.88 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539291 SAMN22234703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX29260552/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539292 SAMN22234723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260563/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539293 SAMN22235057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260556/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.4 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539294 SAMN22235056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260565/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539295 SAMN22235055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260571/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.04 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539296 SAMN22234722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260573/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.84 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539297 SAMN22234721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260575/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.79 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539298 SAMN22234720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260578/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.61 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539299 SAMN22235054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260581/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.43 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539300 SAMN22235052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260587/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.43 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539301 SAMN22235053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260584/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.09 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539302 SAMN22235048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260597/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13.6 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539303 SAMN22235049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260596/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.02 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539304 SAMN22235050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260595/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.98 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539305 SAMN22235051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260591/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.04 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539306 SAMN22234719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260602/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539307 SAMN22234905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260607/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.85 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539308 SAMN22234904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260609/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.79 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539309 SAMN22235046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260621/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.85 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539310 SAMN22234718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260611/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539311 SAMN22234903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260622/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.41 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539312 SAMN22235047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260610/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.46 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539313 SAMN22235045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260623/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.64 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539314 SAMN22235044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260624/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.53 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539315 SAMN22235043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260630/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.01 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539316 SAMN22235042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260634/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539317 SAMN22235041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260647/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.07 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539318 SAMN22234902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260652/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539319 SAMN22234901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260653/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.98 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539320 SAMN22234900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260654/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.77 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539321 SAMN22234899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260655/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.16 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539322 SAMN22234898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260656/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.97 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539323 SAMN22235039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260659/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.59 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539324 SAMN22234717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260663/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539325 SAMN22235040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260657/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.75 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539326 SAMN22235038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260688/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.47 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539327 SAMN22235037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260689/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.94 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539328 SAMN22234938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260690/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.2 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539329 SAMN22234937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260694/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.57 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539330 SAMN22235019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29260697/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.77 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539331 SAMN22234936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260696/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.21 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539332 SAMN22235036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260698/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.52 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539333 SAMN22234935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260701/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.62 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539334 SAMN22234934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260703/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539335 SAMN22234933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260706/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.97 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539336 SAMN22234999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260707/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.31 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539337 SAMN22234897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260708/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.44 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539338 SAMN22234895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260711/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.08 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539339 SAMN22234896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260709/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539340 SAMN22234894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260713/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539341 SAMN22234931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260722/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.46 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539342 SAMN22234932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260721/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539343 SAMN22234893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260717/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539344 SAMN22234930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260724/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.56 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539345 SAMN22234929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260725/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.94 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539346 SAMN22234928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260726/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.02 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539347 SAMN22234926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260730/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.65 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539348 SAMN22234892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX29260737/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539349 SAMN22234925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260739/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539350 SAMN22234927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260728/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539351 SAMN22234924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX29260748/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539352 SAMN22235035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260753/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539353 SAMN22235018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29260765/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539354 SAMN22235034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260768/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.36 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539355 SAMN22235033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260769/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.57 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539356 SAMN22235031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260771/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.92 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539357 SAMN22235030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260774/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.47 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539358 SAMN22235032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260770/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539359 SAMN22235029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260779/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.78 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539360 SAMN22234716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260780/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.76 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539361 SAMN22235028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX29260781/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.96 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539362 SAMN22234998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260788/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.01 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539363 SAMN22234997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX29260797/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.95 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539364 SAMN22234715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260790/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.68 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539365 SAMN22235017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX29260798/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.2 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10539366 SAMN22234714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX29260799/2021 collected_by Quest Diagnostics Incorporated collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated