SRS10541410 SAMN22237955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10413176/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.282 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.558 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541409 SAMN22237956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10413108/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.713 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.32 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.467 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541408 SAMN22237737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10412781/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.398 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.018 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.611 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541407 SAMN22237957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10412629/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.104 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.038 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.193 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541406 SAMN22237958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10412529/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.183 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.908 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.28 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541405 SAMN22237959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10412361/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.813 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.853 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541404 SAMN22237960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10412343/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.159 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.904 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.318 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541403 SAMN22237738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10412326/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.097 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.066 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.702 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.698 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541402 SAMN22237961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10412142/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.741 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.176 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.709 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541401 SAMN22237538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10412035/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.811 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.958 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.153 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541400 SAMN22237739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10412006/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.351 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.824 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.62 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541399 SAMN22237589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10411736/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.197 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.957 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.996 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.237 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541398 SAMN22237962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10411561/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.617 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.897 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.647 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.59 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541397 SAMN22237550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NY-CDC-MMB10411392/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.964 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.651 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.515 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.776 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541396 SAMN22237963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10411306/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.532 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.119 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.566 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541395 SAMN22237524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10411228/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.971 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.884 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.712 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541394 SAMN22237964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10411194/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.641 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.959 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.424 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541393 SAMN22237740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10410383/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.759 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.38 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.708 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541392 SAMN22237741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10410274/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.672 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.489 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.717 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541391 SAMN22237742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10410265/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.337 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.785 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.419 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541390 SAMN22237743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10410194/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.84 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.383 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.941 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.88 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541389 SAMN22237965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10410155/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.25 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.91 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.883 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.224 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541388 SAMN22237571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10410075/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.434 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.682 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.859 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.59 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541387 SAMN22237966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10410052/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.974 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.763 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541386 SAMN22237744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10410006/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.986 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.379 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.157 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.772 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541411 SAMN22237954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10413187/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.148 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.115 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.525 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.769 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541412 SAMN22237953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10413389/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.586 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.567 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.155 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541413 SAMN22237952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10413703/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.224 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.227 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.204 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.566 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541414 SAMN22237951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10413930/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.517 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.969 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.587 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.886 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541415 SAMN22237570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10414018/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.071 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.919 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.795 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541416 SAMN22237950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10414167/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.423 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.705 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.393 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.749 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541417 SAMN22237736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10414179/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.827 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.849 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.795 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.027 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541418 SAMN22237710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428506/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.973 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.05 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.42 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.341 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541419 SAMN22237709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428542/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.041 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.177 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.199 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.143 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541420 SAMN22237708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428599/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.929 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.088 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.14 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.192 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541421 SAMN22237916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10428699/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.298 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.011 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.717 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.202 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541422 SAMN22237915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10428977/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.998 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.212 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.122 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541423 SAMN22237707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429088/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.063 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.578 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.89 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.845 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541424 SAMN22237529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10429125/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.141 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.961 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.872 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.428 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541425 SAMN22237706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429211/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.642 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.919 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.921 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.541 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541426 SAMN22237705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429224/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.21 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.014 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.388 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.528 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541427 SAMN22237704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429312/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.983 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.821 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.697 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.178 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541428 SAMN22237703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429466/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.763 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.296 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.689 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541429 SAMN22237914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10429542/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.907 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.352 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.448 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.19 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541430 SAMN22237913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10429624/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.645 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.583 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.861 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.692 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541431 SAMN22237702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429627/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.547 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.773 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.883 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541432 SAMN22237528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10429736/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.962 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.623 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.07 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.844 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541433 SAMN22237506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10429775/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.792 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.752 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.736 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541434 SAMN22237701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429876/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.222 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.062 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.311 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.631 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541435 SAMN22237700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429901/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.423 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.88 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.133 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.553 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541436 SAMN22237699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430748/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.036 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.292 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.696 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.069 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541437 SAMN22237698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430837/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.456 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.021 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.827 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541438 SAMN22237697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430847/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.72 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.798 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.67 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541439 SAMN22237696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430862/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.085 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541440 SAMN22237695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431206/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.706 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.071 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.578 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.626 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541441 SAMN22237912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10431373/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.458 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.065 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.252 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541442 SAMN22237911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10431658/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.849 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.998 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.894 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.11 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541443 SAMN22237554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10431804/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.473 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.751 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.249 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541444 SAMN22237910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10431838/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.638 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.327 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.828 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.55 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541445 SAMN22237694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431841/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.969 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.05 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.376 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541446 SAMN22237909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10431877/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.925 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.344 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.225 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.508 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541447 SAMN22237908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10432143/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.705 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.037 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.258 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541448 SAMN22237693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10432234/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.264 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.116 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.419 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.261 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541449 SAMN22237692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10432294/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 34.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.058 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541450 SAMN22238011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400409/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.794 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.721 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.863 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.476 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541451 SAMN22237784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400425/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.002 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.237 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.206 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.159 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541452 SAMN22237783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400466/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.193 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.386 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.451 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.015 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541453 SAMN22237782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400467/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.788 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.554 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.236 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541454 SAMN22237781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400520/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.168 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.869 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.309 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.924 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541455 SAMN22238010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400531/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.726 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.593 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.824 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541456 SAMN22237780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400638/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.955 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.545 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.351 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.724 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541457 SAMN22238009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400665/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.91 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.384 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.591 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541460 SAMN22238006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400824/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.491 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.432 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.636 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541461 SAMN22237779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400849/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.404 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.927 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.053 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.007 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541462 SAMN22237778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400860/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.856 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.658 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.043 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.777 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541463 SAMN22238005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400887/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.858 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.304 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.125 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.351 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541464 SAMN22237777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400901/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.812 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.336 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.737 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541465 SAMN22237776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10401007/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.156 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.779 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.41 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.023 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541466 SAMN22237525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10401011/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.889 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.733 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.535 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541467 SAMN22238004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10401014/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.435 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.696 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.007 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541468 SAMN22237775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10401046/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.333 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.866 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.7 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541469 SAMN22237774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10401049/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.967 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.474 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541470 SAMN22237773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10401145/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.754 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.391 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.305 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.818 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541471 SAMN22237772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10401452/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.066 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.843 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.385 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.651 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541472 SAMN22238003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10401543/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.912 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.806 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.787 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.453 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541473 SAMN22238002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10401713/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.685 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.058 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.798 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.781 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541474 SAMN22238001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10401810/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.828 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.76 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.169 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.668 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541475 SAMN22238000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10401880/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.389 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.638 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.102 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.15 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541476 SAMN22237771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10401985/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.929 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.973 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.94 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.212 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541477 SAMN22237770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10402056/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.068 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.089 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.941 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.303 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541478 SAMN22237999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10402147/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.432 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.996 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.449 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.229 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541479 SAMN22237998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10402182/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.664 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.03 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.718 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.12 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541458 SAMN22238008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400685/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.823 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.401 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.101 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541459 SAMN22238007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400751/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.746 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.615 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.743 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541480 SAMN22237593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10402319/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.891 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.384 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.135 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541481 SAMN22237997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10402331/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.814 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.409 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.772 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.945 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541482 SAMN22237769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10402338/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.792 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.642 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.863 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541483 SAMN22237996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10402371/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.074 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.925 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.124 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541484 SAMN22237573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10402463/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.382 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.342 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.449 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.596 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541485 SAMN22237995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10402557/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.495 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.965 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.391 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541486 SAMN22237768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10402574/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.112 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.252 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.571 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541487 SAMN22237767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10402709/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.078 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.476 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.23 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.592 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541488 SAMN22237592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10402908/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.604 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.233 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.691 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541489 SAMN22237591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10403362/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.427 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.53 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.153 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.246 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541490 SAMN22237994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10403485/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.34 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.312 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.116 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.14 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541491 SAMN22237766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10403493/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.413 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541492 SAMN22237765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10403574/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.489 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.253 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.629 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541493 SAMN22237993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10403618/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.165 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.99 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.21 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.877 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541494 SAMN22237992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10403736/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.163 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.399 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.901 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.804 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541495 SAMN22237764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10403939/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.919 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.6 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.16 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.173 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541496 SAMN22237763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10403964/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.747 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.688 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.957 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541497 SAMN22237991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10403996/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.527 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.247 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.997 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.395 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541498 SAMN22237762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10403997/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.409 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.807 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.257 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.139 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541499 SAMN22237990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10404015/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.242 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.239 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.09 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541500 SAMN22237989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10404033/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.039 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.158 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.076 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.104 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541501 SAMN22237761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10404063/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.837 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.353 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.204 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541502 SAMN22237988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10404249/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.568 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.413 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541503 SAMN22237987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10404253/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.28 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.448 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541504 SAMN22237760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10404345/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.334 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.153 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.424 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541505 SAMN22237759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10404451/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.119 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.671 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.834 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.254 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541506 SAMN22237758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10404531/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.728 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.98 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.762 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541507 SAMN22237986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10404659/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.584 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.128 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.557 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541508 SAMN22237757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10404745/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.474 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.625 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.72 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541509 SAMN22237985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10404857/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.854 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.906 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.003 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541510 SAMN22237542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10405134/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 92 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.841 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.583 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.968 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.96 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541511 SAMN22237984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10405155/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.163 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.786 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.018 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.767 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541512 SAMN22237756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10405223/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.703 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.507 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.099 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541513 SAMN22237983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10405386/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.967 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.888 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.688 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541514 SAMN22237825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394363/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.915 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.465 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.904 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541515 SAMN22237600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10394564/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.993 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.844 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.401 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.825 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541516 SAMN22237824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394725/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.011 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.837 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.552 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541517 SAMN22238026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10394732/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.252 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.869 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.387 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541518 SAMN22237823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394767/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.7 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.994 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.653 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541519 SAMN22237822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394800/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.393 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.066 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.609 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.85 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541520 SAMN22237599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10394948/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.495 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.491 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.207 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.784 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541521 SAMN22237821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394957/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.883 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.643 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.155 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541522 SAMN22237598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10395063/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.38 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.35 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.565 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.871 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541523 SAMN22237820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10395184/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race N collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.378 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.614 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541524 SAMN22237819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10395587/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.575 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.479 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 19.828 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541525 SAMN22237818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10395605/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.233 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.874 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.006 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.944 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541526 SAMN22237817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10395795/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.199 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.449 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.552 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.267 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541527 SAMN22237816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10395823/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.871 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.501 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541528 SAMN22237543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10395966/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.731 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.903 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.097 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.047 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541529 SAMN22238025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10396055/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.005 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.83 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.181 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.101 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541530 SAMN22237815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10396060/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.641 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.848 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.175 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541531 SAMN22237597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10396056/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.945 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.765 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.423 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541532 SAMN22238024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10396129/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.059 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.187 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541533 SAMN22237814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10396149/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.086 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.974 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.92 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541534 SAMN22237813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10396240/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.799 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.644 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.735 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541535 SAMN22238023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10396365/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.183 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.647 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.205 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.499 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541536 SAMN22238022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10396419/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.156 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.679 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.112 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.169 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541537 SAMN22238021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10396528/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.697 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.923 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.826 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.098 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541538 SAMN22237812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10396545/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.753 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.579 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.144 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541539 SAMN22238020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10396589/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.786 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.341 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.901 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.366 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541540 SAMN22237811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10396814/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.972 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.285 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.224 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.72 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541541 SAMN22237810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10396890/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.115 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.262 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541542 SAMN22237809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397016/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.941 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.718 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.839 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541543 SAMN22238019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10397026/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.212 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.34 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.319 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541544 SAMN22237808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397123/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.006 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.694 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.119 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541545 SAMN22237807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397326/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.85 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.867 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.229 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.715 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541546 SAMN22237724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10424741/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.245 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.508 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.496 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541547 SAMN22237725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10424611/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.791 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.316 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541548 SAMN22237531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10424931/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.948 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.869 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.243 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.275 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541549 SAMN22237723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425116/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.124 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541550 SAMN22237566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10425058/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.529 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.31 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.388 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541551 SAMN22237722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425199/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.986 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.743 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.012 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.751 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541552 SAMN22237926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10425513/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.522 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.165 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.378 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541553 SAMN22237565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10425639/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.021 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.158 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541554 SAMN22237721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425745/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.823 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.147 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.952 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541555 SAMN22237925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10425867/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.917 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.485 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.607 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.023 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541556 SAMN22237720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425971/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.7 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.92 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.789 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.226 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541557 SAMN22237719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426170/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.336 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.485 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 19.861 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541558 SAMN22237924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10426198/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.317 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.837 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.966 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541559 SAMN22237718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426386/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.913 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.115 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.675 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.47 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541560 SAMN22237717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426596/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.342 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.725 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.462 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.666 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541561 SAMN22237716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426657/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.977 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.969 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.143 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.757 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541562 SAMN22237536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10426797/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 96 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.788 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.44 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541563 SAMN22237923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10426835/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.895 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.566 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.938 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.87 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541564 SAMN22237922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10426866/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.087 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.398 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.307 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.69 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541565 SAMN22237921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10427018/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.596 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.426 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.612 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.36 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541566 SAMN22237920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10427055/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.82 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.358 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.033 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541567 SAMN22237919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10427076/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.956 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.655 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.997 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.888 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541568 SAMN22237564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10427093/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.341 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.742 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.532 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541569 SAMN22237563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10427097/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.37 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.929 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.797 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541570 SAMN22237715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10427526/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.817 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.763 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.664 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.142 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541571 SAMN22237918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10427541/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.482 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.343 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.494 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.859 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541572 SAMN22237530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10427551/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.419 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.672 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.451 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.91 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541573 SAMN22237714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10427659/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.369 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.44 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.726 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.603 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541574 SAMN22237713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428222/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.959 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.793 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.176 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.974 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541575 SAMN22237917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10428244/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.247 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.126 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.426 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.504 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541576 SAMN22237712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428451/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.314 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.112 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541577 SAMN22237711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428496/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.928 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.462 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.983 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.794 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541579 SAMN22237805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397588/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.016 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.518 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.137 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.435 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541580 SAMN22237804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397834/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.777 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.46 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.12 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541581 SAMN22237803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397840/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.588 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.36 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.415 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541582 SAMN22237802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397870/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.476 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.047 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.428 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541583 SAMN22237801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397984/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.066 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.31 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541584 SAMN22237800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398027/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.742 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.965 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.203 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.389 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541585 SAMN22238018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10397985/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.713 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.815 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.134 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541586 SAMN22237799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398040/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.857 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.962 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.525 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541587 SAMN22237798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398062/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.119 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.549 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.947 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541588 SAMN22238017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10398191/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.883 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.06 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.747 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.022 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541589 SAMN22237797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398219/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.373 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.524 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.007 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.901 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541590 SAMN22237796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398324/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.799 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.833 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.338 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541591 SAMN22237795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398390/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.046 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.8 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.413 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541592 SAMN22238016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10398401/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.082 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.352 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.623 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541593 SAMN22237794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398495/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.942 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.855 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.654 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541594 SAMN22237596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10398526/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.893 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.993 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.27 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.994 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541595 SAMN22237793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398566/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.121 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.916 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.6 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.151 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541596 SAMN22237792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10398606/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.05 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.524 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.231 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.303 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541597 SAMN22238015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10398650/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.674 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.512 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.938 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.628 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541598 SAMN22237791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10399054/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.298 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.212 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.618 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.128 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541599 SAMN22237790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10399079/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.242 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.153 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.459 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541600 SAMN22237789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10399136/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.2 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.191 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.36 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541601 SAMN22237788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10399171/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.481 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.472 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.149 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.549 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541602 SAMN22238014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10399228/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.719 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.006 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541578 SAMN22237806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10397573/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.449 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.376 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.203 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541603 SAMN22238013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10399493/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.734 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.305 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.486 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.991 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541604 SAMN22237787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10399515/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.622 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.368 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.977 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.481 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541605 SAMN22237595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10399536/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.794 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.388 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.926 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541606 SAMN22237786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10399671/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.758 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.913 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.076 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.883 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541607 SAMN22237785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10400274/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.422 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.554 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.135 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541608 SAMN22238012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10400295/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.228 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.112 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.508 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.486 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541609 SAMN22237594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10400362/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.978 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.07 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.565 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541610 SAMN22237487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10376429/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.684 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.342 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.577 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.128 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541611 SAMN22237527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10386088/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.39 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.231 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.683 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541612 SAMN22238032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10387393/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.307 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.616 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.092 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.629 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541613 SAMN22238031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10387574/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.517 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.929 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.171 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541614 SAMN22238030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10388139/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.774 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.826 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.116 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.593 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541615 SAMN22238029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10388891/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.802 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.812 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.067 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541616 SAMN22238028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10389902/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.573 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.833 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.91 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541617 SAMN22238027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10389931/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.024 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.949 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.427 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.226 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541618 SAMN22237546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10390293/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.547 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.084 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.507 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.7 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541619 SAMN22237545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10392070/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.805 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.967 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.99 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541620 SAMN22237844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10392457/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.728 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.583 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.247 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541621 SAMN22237843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10392508/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.065 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.463 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541622 SAMN22237526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10392574/2021 collected_by Mako Medical collection_date 2021-09-12 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.721 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.434 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.988 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.94 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541623 SAMN22237842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10392587/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.6 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.195 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.458 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541624 SAMN22237841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10392670/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.088 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.771 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.429 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.084 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541625 SAMN22237840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10392997/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.777 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.612 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.182 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541626 SAMN22237839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393071/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.856 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.836 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.389 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.401 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541627 SAMN22237838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393146/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.354 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.273 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.376 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.004 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541628 SAMN22237837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393230/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.972 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.864 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.626 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541629 SAMN22237601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10393314/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.15 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.095 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.491 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.462 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541630 SAMN22237836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393427/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.613 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.009 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.897 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541631 SAMN22237835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393453/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.597 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.218 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.6 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541632 SAMN22237834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393512/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.724 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.296 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.326 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541633 SAMN22237544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10393784/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.371 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.181 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.462 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541634 SAMN22237833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393821/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.734 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.765 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.655 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541635 SAMN22237832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393868/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.848 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.255 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541636 SAMN22237831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393911/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.679 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.886 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.452 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541637 SAMN22237830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10393929/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.791 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.229 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.825 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 38.998 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541638 SAMN22237828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394113/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.863 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.059 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.436 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541639 SAMN22237829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394108/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.271 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.373 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.809 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541640 SAMN22237827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394124/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.246 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.417 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.772 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541641 SAMN22237826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10394240/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.189 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.546 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.998 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541642 SAMN22237907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10432470/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.23 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.024 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541643 SAMN22237505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10432926/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.058 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.415 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.119 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541644 SAMN22237691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10432999/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.013 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.859 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.037 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.649 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541645 SAMN22237690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10433046/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.44 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.728 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.451 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.116 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541646 SAMN22237689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10433326/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.773 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.852 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541647 SAMN22237480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10433485/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.871 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.145 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.468 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541648 SAMN22237688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10433724/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.097 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.035 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541649 SAMN22237906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10434097/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.031 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.313 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.244 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.992 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541650 SAMN22237687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10434323/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.33 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.144 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.805 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541651 SAMN22237686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10434388/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.361 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.229 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.71 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541652 SAMN22237553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10434532/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.301 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.239 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.305 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541653 SAMN22237552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10434552/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.712 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.918 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.718 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541654 SAMN22237685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10434670/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.401 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.921 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.663 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541655 SAMN22237684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10434868/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.841 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.071 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.88 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.698 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541656 SAMN22237683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435057/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.372 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.303 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541657 SAMN22237682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435117/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.355 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.097 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.542 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541658 SAMN22237905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10435158/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.89 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.633 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.149 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.766 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541659 SAMN22237562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10435429/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.164 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.03 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.231 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541660 SAMN22237680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435897/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.475 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.916 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.795 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541661 SAMN22237681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435691/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.165 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.459 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.723 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20.962 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541662 SAMN22237679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435976/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.84 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.535 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.395 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.129 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541663 SAMN22237904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10436007/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.263 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.59 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.13 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541664 SAMN22237678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10436180/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.434 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.035 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.832 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541665 SAMN22237903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10436211/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.548 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.143 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.914 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.328 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541666 SAMN22237561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10436697/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.557 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.191 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.8 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541667 SAMN22237479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10437150/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.978 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.97 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.576 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.112 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541668 SAMN22237902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10437346/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.891 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.279 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541669 SAMN22237677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10437355/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.685 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.564 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.467 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.183 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541670 SAMN22237901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10437428/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.436 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.048 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.672 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.871 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541671 SAMN22237489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TX-CDC-MMB10438314/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.931 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.326 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.033 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.069 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541672 SAMN22237478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10438150/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.114 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.533 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.864 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541673 SAMN22237676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438455/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.627 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.309 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.177 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541674 SAMN22237556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10479823/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.713 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.284 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.574 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.924 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541675 SAMN22237495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479832/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.662 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.323 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.604 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.751 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541676 SAMN22237494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479841/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.395 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.861 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.589 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.535 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541677 SAMN22237493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479874/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.765 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.499 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.762 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.492 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541678 SAMN22237492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479885/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.177 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.783 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.499 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541679 SAMN22237491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10480004/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.727 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.212 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.879 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541680 SAMN22237604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10482055/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.642 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.604 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.724 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541681 SAMN22237603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10482278/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.469 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.364 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.483 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.097 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541682 SAMN22237845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10483624/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.643 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.429 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.591 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541683 SAMN22237577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10485310/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.039 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.091 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541684 SAMN22237576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10487757/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.761 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.399 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.616 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.013 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541685 SAMN22237575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10489853/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.686 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.277 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.561 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.297 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541686 SAMN22237574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10490131/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.112 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.258 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.177 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541687 SAMN22238034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/AL-CDC-MMB10491020/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.863 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.211 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541688 SAMN22237602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10493547/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.098 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.2 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.232 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541689 SAMN22237555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10502775/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.801 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.957 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.347 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.66 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541690 SAMN22237490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10506819/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.673 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.293 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.908 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541691 SAMN22237755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10405388/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.168 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.137 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.378 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541692 SAMN22237590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10405713/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.563 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.473 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.305 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.216 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541693 SAMN22237982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10405794/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.843 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.16 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.839 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541694 SAMN22237981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10406077/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.968 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.559 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541695 SAMN22237754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10405900/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.916 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.089 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.092 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.415 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541696 SAMN22237572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10406124/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.429 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541697 SAMN22237753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10406361/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.136 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.107 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.287 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.746 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541698 SAMN22237980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10406394/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.256 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.077 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541699 SAMN22237979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10406402/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.172 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.89 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.155 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541700 SAMN22237752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10406691/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.367 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.373 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.344 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541701 SAMN22237978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10406692/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.841 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.007 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.97 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.87 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541702 SAMN22237976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10406955/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.592 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.356 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.688 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541703 SAMN22237977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10406814/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.817 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.751 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.937 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.43 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541704 SAMN22237975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10407152/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.715 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.678 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.521 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.63 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541705 SAMN22237974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10407452/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.385 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.923 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.35 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541706 SAMN22237751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10407738/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.525 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.454 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.753 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.598 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541707 SAMN22237750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10407994/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.158 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.762 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.315 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.184 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541708 SAMN22237973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10408194/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.032 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.584 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541709 SAMN22237972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10408257/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.453 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.51 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541710 SAMN22237749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10408308/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.164 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.649 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.331 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541711 SAMN22237541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10408519/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.214 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.66 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.801 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541712 SAMN22237971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10408805/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.997 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.796 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541713 SAMN22237970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10409014/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.433 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.704 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.956 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541714 SAMN22237969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10409094/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.349 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.922 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.332 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.57 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541715 SAMN22237968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10409142/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.741 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.85 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.678 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541716 SAMN22237540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10409449/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.25 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.752 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.618 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541717 SAMN22237967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10409194/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.566 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.117 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.723 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541718 SAMN22237748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10409346/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.312 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.12 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.535 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541719 SAMN22237747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10409720/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.673 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.499 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.541 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.565 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541720 SAMN22237745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10409928/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.722 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.712 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.93 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.405 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541721 SAMN22237746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10409756/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.082 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.778 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.008 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.217 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541722 SAMN22237539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10409846/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.9 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.947 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.033 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541723 SAMN22237949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10414286/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.936 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.74 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.571 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.348 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541724 SAMN22237948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415022/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.39 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.185 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.512 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541725 SAMN22237588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10415039/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.465 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.017 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.976 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.834 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541726 SAMN22237587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10415042/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.553 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.046 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.266 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.859 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541727 SAMN22237586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10415061/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.166 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.391 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.61 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.64 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541728 SAMN22237947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415301/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.998 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.993 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.141 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541729 SAMN22237946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415383/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.117 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.861 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.207 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541730 SAMN22237585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10415390/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.43 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.803 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.102 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541731 SAMN22237945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415703/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.038 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.121 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.367 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.67 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541732 SAMN22237944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415796/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.226 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.843 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.276 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541733 SAMN22237943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415805/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.544 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.775 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.819 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541734 SAMN22237942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10415885/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.127 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.793 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541735 SAMN22237941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10416026/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.994 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.53 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541736 SAMN22237940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10416032/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.455 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.091 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.469 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.603 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541737 SAMN22237939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10416396/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.84 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.927 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.021 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.464 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541738 SAMN22237938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10416844/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.095 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.891 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.378 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541739 SAMN22237937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10416908/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.963 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.825 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.806 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541740 SAMN22237936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10417038/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.238 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.94 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.25 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.386 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541741 SAMN22237537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10417049/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.775 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.577 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.845 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541742 SAMN22237935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10417189/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.64 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.162 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.83 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 39.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541743 SAMN22237933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10417753/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.736 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.752 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.081 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.222 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541744 SAMN22237934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10417502/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.054 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.806 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.84 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541745 SAMN22237931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10418165/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.936 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.175 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.527 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541746 SAMN22237569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10418226/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.664 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.711 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.946 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.979 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541747 SAMN22237932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10417774/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.255 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.362 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.421 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541748 SAMN22237930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10418466/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.362 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.244 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.375 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.953 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541749 SAMN22237929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10418544/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.275 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.531 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.27 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541750 SAMN22237928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10418555/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.528 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.882 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.083 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.229 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541751 SAMN22237927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10418598/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.865 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.406 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.217 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541752 SAMN22237486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10419668/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.856 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.728 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.497 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.34 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541753 SAMN22237523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10419713/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.611 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.128 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.446 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541754 SAMN22237522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10419753/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.892 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.513 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.758 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541755 SAMN22237675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438595/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.161 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.895 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.28 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541756 SAMN22237900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10439420/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.097 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.426 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.281 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541757 SAMN22237533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OR-CDC-MMB10439660/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.27 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.063 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.716 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541758 SAMN22237535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10440160/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.213 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.719 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.402 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.262 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541759 SAMN22237899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10440062/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.938 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.533 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.116 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541760 SAMN22237674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10440221/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.592 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.99 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.525 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.513 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541761 SAMN22237583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10440564/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.113 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.041 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.506 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541762 SAMN22237673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10441339/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.323 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.388 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.643 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541763 SAMN22237672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10441372/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.231 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.923 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.396 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541764 SAMN22237671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10441562/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.488 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.726 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.461 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541765 SAMN22237670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10442139/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.743 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.467 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.514 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541766 SAMN22237560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10442220/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.645 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.897 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.111 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541767 SAMN22237477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10442255/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.482 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.064 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541768 SAMN22237669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10442770/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.824 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.546 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.901 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541769 SAMN22237898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10442297/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.864 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.978 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.043 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.73 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541770 SAMN22237897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10443136/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.461 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.166 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.68 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541771 SAMN22237668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10443179/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.316 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.982 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.703 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.491 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541772 SAMN22237896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10443362/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.228 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.33 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.589 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541773 SAMN22237895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10443788/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.848 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.142 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.928 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541774 SAMN22237894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10443987/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.89 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.325 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.07 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541775 SAMN22237893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10444375/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.88 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541776 SAMN22237892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10444410/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.981 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.765 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541777 SAMN22237890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445115/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.689 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.342 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.874 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.572 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541778 SAMN22237891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10444596/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.105 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.582 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.451 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541779 SAMN22237559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10444643/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.019 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.276 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.141 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541780 SAMN22237889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445430/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.691 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.7 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.087 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.33 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541781 SAMN22237888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445884/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.321 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.07 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.784 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.38 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541782 SAMN22237886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445994/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.637 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.969 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.996 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541783 SAMN22237887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445980/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.358 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.502 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.337 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.739 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541784 SAMN22237885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446359/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.388 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.078 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.65 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541785 SAMN22237884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446382/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.627 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.05 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.566 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541786 SAMN22237883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446400/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.813 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.308 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541787 SAMN22237521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10419848/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.062 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.936 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.333 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541788 SAMN22237520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10419899/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.863 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.875 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.198 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541789 SAMN22237519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10419904/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.177 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.182 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541790 SAMN22237551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NJ-CDC-MMB10420228/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.706 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.083 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.709 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.77 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541791 SAMN22237518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420006/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.661 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.588 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.669 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541792 SAMN22237517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420334/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.967 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.441 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.325 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541793 SAMN22237485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10420345/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.503 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.613 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.787 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.361 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541794 SAMN22237484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10420416/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.955 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.427 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.825 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.632 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541795 SAMN22237516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420437/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.884 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.856 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.369 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541796 SAMN22237515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420456/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.172 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.037 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.202 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541797 SAMN22237514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420569/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.436 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.984 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.743 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541798 SAMN22237513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420579/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.271 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.609 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.654 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541799 SAMN22237512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10420938/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.893 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.85 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.705 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.36 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541800 SAMN22237511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10421230/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.487 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.272 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.5 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541801 SAMN22237509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10421626/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.046 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.946 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.317 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541802 SAMN22237510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10421423/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.881 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.729 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.236 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541803 SAMN22237508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10421654/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.699 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.575 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.934 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541804 SAMN22237735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10422363/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.389 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.875 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.813 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541805 SAMN22237734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10422507/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.469 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.021 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.536 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.384 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541806 SAMN22237568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10422635/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.08 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.652 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.004 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.955 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541807 SAMN22237567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10422698/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.944 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.189 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.504 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.768 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541808 SAMN22237733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423241/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.687 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.915 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.702 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.2 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541809 SAMN22237532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10423426/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.678 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.646 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.564 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.978 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541810 SAMN22237507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10423505/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.594 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.242 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.671 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.958 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541811 SAMN22237732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423538/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.91 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.661 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.128 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.587 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541812 SAMN22237731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423577/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.491 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.044 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.297 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541813 SAMN22237730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423619/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.753 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.73 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.827 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541814 SAMN22237729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423675/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.947 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.896 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.906 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541815 SAMN22237728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423787/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.001 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.445 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.202 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.739 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541816 SAMN22237726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10424200/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.308 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.716 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.324 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.355 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541817 SAMN22237727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423794/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.129 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.688 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.136 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.379 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541818 SAMN22237584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10424330/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.401 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.038 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.933 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.173 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541819 SAMN22237548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10314667/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.057 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.389 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.097 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.597 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541820 SAMN22237547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10351436/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.654 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.675 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.687 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541821 SAMN22238033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10344054/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.206 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.026 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.525 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.563 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541822 SAMN22237488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10376422/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.772 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.627 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.746 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541823 SAMN22237882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446585/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.18 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.594 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.253 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.867 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541824 SAMN22237881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446597/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.018 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.879 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.384 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.804 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541825 SAMN22237879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446622/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.105 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.771 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.37 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541826 SAMN22237880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446614/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.237 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.61 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.203 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541828 SAMN22237877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446757/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.597 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.019 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.741 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.605 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541829 SAMN22237875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10447438/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.666 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.481 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.903 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.727 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541830 SAMN22237874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10447708/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.284 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.847 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.419 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.986 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541831 SAMN22237876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446836/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.212 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.186 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.492 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.392 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541832 SAMN22237483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10448144/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.087 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.016 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.371 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.28 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541833 SAMN22237482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10448377/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.799 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.93 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.072 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.196 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541834 SAMN22237582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10452061/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.332 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.903 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.44 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.065 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541835 SAMN22237581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10452879/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.033 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.778 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.283 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541836 SAMN22237504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10452777/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.628 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.48 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.946 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.214 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541837 SAMN22237667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453348/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.78 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.334 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.554 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541838 SAMN22237666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453397/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.029 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.97 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.429 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.707 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541839 SAMN22237665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453482/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.443 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.085 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.72 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.504 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541840 SAMN22237503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10453747/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.567 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.259 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541841 SAMN22237476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10453517/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.133 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.812 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.794 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.103 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541842 SAMN22237502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10453751/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.689 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.646 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.631 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541843 SAMN22237664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453810/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.005 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.979 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.228 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541844 SAMN22237663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453985/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.974 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.042 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.956 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541845 SAMN22237661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10455279/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.153 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.687 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.097 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.022 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541846 SAMN22237475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10456017/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.44 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.264 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.599 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.845 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541847 SAMN22237662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10454047/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.865 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.166 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541848 SAMN22237474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10456079/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.461 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.028 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.261 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.698 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541849 SAMN22237473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10456103/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.303 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.204 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.448 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.129 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541850 SAMN22237501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10456343/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.453 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.048 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.874 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.672 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541827 SAMN22237878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10446657/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.244 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.244 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.438 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541851 SAMN22237659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10456368/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.953 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.364 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541852 SAMN22237660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10456204/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.961 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.3 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.319 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541853 SAMN22237658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10456417/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.995 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.971 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.061 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.012 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541854 SAMN22237657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457011/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.616 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.73 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.014 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.289 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541855 SAMN22237656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457168/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.788 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.521 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.713 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541856 SAMN22237872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10457527/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.242 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.7 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.474 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.05 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541857 SAMN22237500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10457558/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.572 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.791 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.787 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541858 SAMN22237873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10457318/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.717 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.561 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.656 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541859 SAMN22237655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457638/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.527 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.389 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.651 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.552 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541860 SAMN22237653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457825/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.904 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.442 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.878 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.292 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541861 SAMN22237654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457692/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.702 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.235 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.457 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.671 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541862 SAMN22237871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10457677/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.845 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.572 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.05 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.52 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541863 SAMN22237651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457996/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.978 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.745 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.165 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.705 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541864 SAMN22237650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458026/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.939 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.12 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.25 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541865 SAMN22237652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10457921/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.741 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.438 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.944 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541866 SAMN22237649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458410/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.615 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.53 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.97 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.581 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541867 SAMN22237648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458634/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.675 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.947 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541868 SAMN22237647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458788/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.027 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.038 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.277 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.2 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541869 SAMN22237646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458811/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.655 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.098 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.245 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.532 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541870 SAMN22237645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458821/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.008 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.317 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.383 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.885 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541871 SAMN22237870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10459322/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.772 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.586 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.897 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.912 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541872 SAMN22237644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10458887/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.075 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.423 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.544 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.435 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541873 SAMN22237643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10459114/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.36 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.604 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.432 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541874 SAMN22237642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10459724/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.84 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.022 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.299 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.087 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541875 SAMN22237472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10459791/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.694 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.488 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.888 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541876 SAMN22237869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10460042/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.622 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.482 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.827 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.761 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541877 SAMN22237641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10460158/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.983 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.279 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541878 SAMN22237640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10460216/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.558 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.993 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.733 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.664 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541879 SAMN22237471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10461105/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.346 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.248 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.654 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541880 SAMN22237580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10460984/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.926 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.393 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541881 SAMN22237639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461318/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.098 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.296 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.615 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.301 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541882 SAMN22237637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461568/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.215 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.595 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541883 SAMN22237638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461508/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.705 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.12 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.058 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.901 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541884 SAMN22237636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461632/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.382 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.688 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.666 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541885 SAMN22237634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461769/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.142 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.958 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.554 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.229 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541886 SAMN22237633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462414/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.052 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.712 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.333 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541887 SAMN22237635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461689/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.286 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.663 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.461 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.55 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541888 SAMN22237632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462427/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.802 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.204 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.28 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541889 SAMN22237631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462541/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.136 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.682 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.391 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541890 SAMN22237579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10462535/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.257 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.753 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.617 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.101 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541891 SAMN22237578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10462698/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.942 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.92 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.049 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541892 SAMN22237630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462829/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.202 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.912 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.577 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.462 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541893 SAMN22237629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462850/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.492 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.498 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.324 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.426 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541894 SAMN22237868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10462827/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.392 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.257 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.26 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.049 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541895 SAMN22237628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462990/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.061 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.67 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.412 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.434 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541896 SAMN22237627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10463086/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.836 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.809 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.075 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.461 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541897 SAMN22237867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10463166/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.531 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.804 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.616 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.995 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541898 SAMN22237866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10463584/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.499 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.743 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.472 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541899 SAMN22237865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10463707/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.324 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.156 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.557 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.244 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541900 SAMN22237626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10463537/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.819 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.237 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.816 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541901 SAMN22237549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NY-CDC-MMB10464347/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.065 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.389 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541902 SAMN22237864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10464892/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.578 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.209 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.746 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541903 SAMN22237625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10464733/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.316 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.428 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.293 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541904 SAMN22237623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10465370/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.567 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.333 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.99 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.847 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541905 SAMN22237622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10465414/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.86 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.477 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.173 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541906 SAMN22237863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10464975/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.043 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.442 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.009 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541907 SAMN22237624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10465353/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.482 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.186 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.127 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 38.669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541908 SAMN22237534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10465646/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.256 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.756 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541909 SAMN22237862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10465997/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.57 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.808 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.254 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541910 SAMN22237620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10466404/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.103 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.619 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.34 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.166 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541911 SAMN22237861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10466380/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.667 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.501 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.768 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.289 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541912 SAMN22237621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10466317/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.651 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.195 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.824 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541913 SAMN22237860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10466805/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.587 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.201 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541914 SAMN22237619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10466445/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.57 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.863 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.442 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.138 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541915 SAMN22237481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10467071/2021 collected_by Mako Medical collection_date 2021-09-13 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.397 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.686 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.668 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541916 SAMN22237618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10467257/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.372 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.306 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.753 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541917 SAMN22237859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10467141/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.071 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.366 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.33 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541918 SAMN22237617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10467870/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.809 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.717 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.16 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541919 SAMN22237857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10467874/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.46 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.431 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.509 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.838 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541920 SAMN22237858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10467533/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.418 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.951 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.646 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541921 SAMN22237616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10468210/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.945 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.188 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.291 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.777 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541922 SAMN22237615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10468972/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.385 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.049 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.57 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541923 SAMN22237614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10469908/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.138 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 34.718 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.925 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.485 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541924 SAMN22237856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10468944/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.13 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.291 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 38.172 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541925 SAMN22237499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10468902/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.542 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.203 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.144 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541926 SAMN22237613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10470242/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.368 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.204 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.898 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.258 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541927 SAMN22237558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10470539/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.017 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.748 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.413 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.697 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541928 SAMN22237470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10470698/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.429 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.453 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541929 SAMN22237612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10470768/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.675 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.419 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.972 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.766 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541930 SAMN22237611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10470902/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.823 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.067 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.048 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541931 SAMN22237609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10470976/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.967 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.228 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.291 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.89 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541932 SAMN22237608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10471369/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.414 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.888 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541933 SAMN22237610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10470928/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.014 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.389 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541934 SAMN22237855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10471908/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.104 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.036 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.45 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.855 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541935 SAMN22237607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10471685/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.984 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.195 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.929 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.655 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541936 SAMN22237557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10472832/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.603 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.381 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.591 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.111 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541937 SAMN22237498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10472404/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.932 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.551 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.303 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541938 SAMN22237853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10473250/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.787 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.091 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.935 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.508 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541939 SAMN22237854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10473209/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.651 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.482 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.985 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541940 SAMN22237497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10473178/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.827 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.05 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.165 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541941 SAMN22237852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10473701/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.24 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.427 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.192 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.318 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541942 SAMN22237851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10473922/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.609 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.891 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.954 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541943 SAMN22237606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10473930/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.698 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.298 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.938 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.896 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541944 SAMN22237850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10474487/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.141 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.014 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541945 SAMN22237849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10474653/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.865 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.506 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.783 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541946 SAMN22237605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10475224/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.512 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.287 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.496 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.214 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541947 SAMN22237848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10475045/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.977 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.346 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.719 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541948 SAMN22237847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10476107/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.54 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.874 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.891 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.527 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541949 SAMN22237846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10476438/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.976 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.566 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.297 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10541950 SAMN22237496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479623/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.239 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.688 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.394 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated