SRS10546734 SAMN22243579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999399/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546735 SAMN22243578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999400/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.1 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546736 SAMN22243544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999453/2021 collected_by WY Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546737 SAMN22243557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999454/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-25 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546738 SAMN22243543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999457/2021 collected_by WY Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546739 SAMN22243606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999458/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-14 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.3 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546740 SAMN22243556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999455/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.33 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546741 SAMN22243555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999456/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.71 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546742 SAMN22243605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999459/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546743 SAMN22243604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999460/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-01 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546744 SAMN22243603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999461/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-02 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546745 SAMN22243577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999463/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546746 SAMN22243560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-4999466/2021 collected_by MT Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546747 SAMN22243575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999465/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.3 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546748 SAMN22243576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999464/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546749 SAMN22243602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999467/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-08-30 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546750 SAMN22243601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999468/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-01 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546751 SAMN22243574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999471/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546752 SAMN22243600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999469/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source Anterior nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546753 SAMN22243599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999472/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.87 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546754 SAMN22243573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999474/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546755 SAMN22243559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-4999475/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546756 SAMN22243572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999476/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.1 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546757 SAMN22243571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999477/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546758 SAMN22243598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999480/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-02 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546759 SAMN22243597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999481/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-07 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546760 SAMN22243596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999482/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546761 SAMN22243554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999484/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.77 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546762 SAMN22243542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999483/2021 collected_by WY Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546763 SAMN22243541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999485/2021 collected_by WY Public Health Laboratory collection_date 2021-09-23 isolation_source Anterior Nasal Swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior Nasal Swab collection_method Anterior Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.351 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546764 SAMN22243540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999486/2021 collected_by WY Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546765 SAMN22243539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999488/2021 collected_by WY Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546766 SAMN22243553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999487/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.31 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546767 SAMN22243552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999490/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.43 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546768 SAMN22243551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999491/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-25 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.7 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546769 SAMN22243550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999492/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.58 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546770 SAMN22243549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999493/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.39 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546771 SAMN22243538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999494/2021 collected_by WY Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546772 SAMN22243595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999496/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-14 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546773 SAMN22243570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999497/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546774 SAMN22243569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999498/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546775 SAMN22243594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999499/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546776 SAMN22243593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999500/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546777 SAMN22243592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999551/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-02 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546778 SAMN22243548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999552/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.78 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546779 SAMN22243537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999553/2021 collected_by WY Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546780 SAMN22243547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999554/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-25 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.74 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546781 SAMN22243536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999555/2021 collected_by WY Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.511 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546782 SAMN22243591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999556/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source Anterior nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546783 SAMN22243590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999557/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-01 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.8 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546784 SAMN22243589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999558/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-08-30 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546785 SAMN22243588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999560/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.48 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546786 SAMN22243568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999561/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546787 SAMN22243558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OK-CDC-2-4999563/2021 collected_by OK Public Health Laboratory, Oklahoma State DOH collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.2 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546788 SAMN22243567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999564/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546789 SAMN22243587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999565/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.6 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546790 SAMN22243586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999566/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-08-29 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546791 SAMN22243585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999567/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-18 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546792 SAMN22243584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999568/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-14 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546793 SAMN22243566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999570/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546794 SAMN22243565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999571/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546795 SAMN22243545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-4999572/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546796 SAMN22243583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999573/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.88 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546797 SAMN22243564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999576/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546798 SAMN22243582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999578/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-08-30 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546799 SAMN22243581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999579/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-08-31 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.3 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546800 SAMN22243563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999580/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.7 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546801 SAMN22243580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999582/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source Anterior nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546802 SAMN22243562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-4999583/2021 collected_by ID Bureau of Laboratories collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546803 SAMN22243535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999584/2021 collected_by WY Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.375 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546804 SAMN22243546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-4999585/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.2 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546805 SAMN22243534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/WY-CDC-2-4999586/2021 collected_by WY Public Health Laboratory collection_date 2021-09-22 isolation_source Anterior Nasal Swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior Nasal Swab collection_method Anterior Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.835 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546806 SAMN22243561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MS-CDC-2-4999394/2021 collected_by MS Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546807 SAMN22243609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999396/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546808 SAMN22243607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999398/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10546809 SAMN22243608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-4999397/2021 collected_by CDPH, Viral and Rickettsial Disease Laboratory collection_date 2021-09-02 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.6 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated