SRS10581975 SAMN22313525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516289/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.17 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.982 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581974 SAMN22313526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516281/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.633 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.735 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.518 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.204 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581973 SAMN22313527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516193/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.052 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.995 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.354 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.193 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581972 SAMN22313189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516176/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.928 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.797 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.081 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.834 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581971 SAMN22313528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516164/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.26 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.161 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.34 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.565 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581970 SAMN22313190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516161/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.195 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.934 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.681 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581969 SAMN22313529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516152/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.897 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.575 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581968 SAMN22313530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516150/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.831 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.313 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.061 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.271 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581967 SAMN22313191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516090/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.833 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.503 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.066 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581966 SAMN22313064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10516030/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.223 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.15 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.723 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.914 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581965 SAMN22313192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516014/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.883 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581964 SAMN22313531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10515985/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.263 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 10.819 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.39 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581963 SAMN22313532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10515960/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.783 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.973 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581987 SAMN22312818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10523892/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.835 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.867 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.87 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581986 SAMN22313472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523835/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.85 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.019 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.862 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581985 SAMN22312927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10523805/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.133 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.872 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.486 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.998 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581984 SAMN22313473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523685/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.605 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.29 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.764 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.601 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581983 SAMN22312928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10523671/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.675 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.568 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.599 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.337 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581976 SAMN22313524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516299/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.188 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.762 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.468 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.993 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581977 SAMN22313188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516459/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.641 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.796 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.827 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581978 SAMN22313187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516462/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.347 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.934 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.283 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581979 SAMN22313523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516524/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.705 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.754 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.353 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581980 SAMN22313186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516554/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.198 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.914 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.36 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581981 SAMN22312893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10516673/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 90 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.391 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.173 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.346 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581982 SAMN22313185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516702/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.439 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.803 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581988 SAMN22313471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523983/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.723 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.752 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.661 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581989 SAMN22312926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10523992/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.849 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.109 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.201 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581990 SAMN22313470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524014/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.67 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.462 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.889 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.269 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581991 SAMN22313469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524090/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.235 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.355 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.375 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.112 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581992 SAMN22313135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10524098/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.451 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.707 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.721 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.313 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581993 SAMN22312817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10524339/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.036 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.875 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.944 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.32 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581994 SAMN22313468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524442/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.322 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.732 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.776 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.759 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581995 SAMN22312989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10524489/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.617 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.049 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.421 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581996 SAMN22313467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524517/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.904 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.967 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.309 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.938 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581997 SAMN22313134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10524531/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.232 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581998 SAMN22313466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524535/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.095 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.454 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10581999 SAMN22313465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524608/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.658 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.101 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.634 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.968 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582001 SAMN22313133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10524655/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.34 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.032 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.32 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.116 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582002 SAMN22313132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10524752/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.126 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.059 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.049 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.065 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582003 SAMN22313463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524782/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.366 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.505 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.703 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.207 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582004 SAMN22313131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10524815/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.378 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.602 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.588 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.28 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582005 SAMN22312925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10524842/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.94 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.041 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.029 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.862 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582007 SAMN22312816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10524862/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.725 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.172 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.94 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582008 SAMN22313461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524872/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.786 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.342 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.747 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.125 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582009 SAMN22313460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524902/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.694 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.02 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582010 SAMN22312988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10524938/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.391 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.569 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.083 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582011 SAMN22313459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525006/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race N collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.093 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.473 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.404 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.542 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582012 SAMN22313458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525041/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.805 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.589 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.69 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.854 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582013 SAMN22313130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525141/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.867 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.505 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.121 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582014 SAMN22312924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10525191/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.352 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.87 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.951 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.354 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582015 SAMN22312874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531926/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.692 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.547 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.873 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582016 SAMN22312873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531944/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.209 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.605 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.804 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582017 SAMN22312872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531995/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.673 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.688 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.631 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.196 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582018 SAMN22312871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10532011/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.718 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.721 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.075 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.834 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582019 SAMN22312870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10532070/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.857 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.323 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.016 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20.809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582020 SAMN22312869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10532141/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.545 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.858 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.684 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582000 SAMN22313464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524628/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.7 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.552 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.017 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582006 SAMN22313462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524852/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.262 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.79 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.248 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.127 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582021 SAMN22313047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532164/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.746 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.416 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.634 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582022 SAMN22313046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532180/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.231 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.346 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.34 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.681 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582023 SAMN22313045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532212/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.203 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.99 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.341 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582024 SAMN22313044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532379/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.979 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.963 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.442 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.062 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582025 SAMN22313043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532389/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.805 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.802 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.623 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582026 SAMN22313042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532473/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.444 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.531 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.713 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.82 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582027 SAMN22313041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532481/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.101 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.301 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.518 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582028 SAMN22313040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532483/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.385 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.848 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.156 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.201 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582029 SAMN22313039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532516/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.352 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.657 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.374 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.813 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582030 SAMN22312986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10532550/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.688 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.759 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.625 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.671 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582031 SAMN22313038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10532756/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.825 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.135 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.06 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.049 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582032 SAMN22312985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10533637/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.559 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.84 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.582 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.929 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582033 SAMN22313037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10533947/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.608 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.592 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.556 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582034 SAMN22312815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535028/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.327 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.961 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.013 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582035 SAMN22312814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535042/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.708 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.906 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.213 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582036 SAMN22312813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535096/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.771 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.302 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.314 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.594 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582037 SAMN22312812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535193/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.012 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.78 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.945 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.839 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582038 SAMN22312811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535200/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.529 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.435 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.479 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.987 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582039 SAMN22312984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10535247/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.55 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.767 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.875 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582040 SAMN22312868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10535289/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.905 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.735 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.065 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582041 SAMN22312810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535320/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.901 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.035 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.576 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.406 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582042 SAMN22312809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10535346/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.583 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.158 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.346 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.606 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582043 SAMN22312867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10535469/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.92 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.464 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.859 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.41 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582044 SAMN22312866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10535606/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 66 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.1 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.885 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.192 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.578 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582045 SAMN22312865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10536678/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.915 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.077 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.198 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582046 SAMN22312864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10536806/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.628 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.024 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.829 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582047 SAMN22313522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516735/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.332 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.917 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.982 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582048 SAMN22313521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516765/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.123 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.088 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.501 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582049 SAMN22313520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516778/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.106 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.539 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582050 SAMN22313184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516806/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.966 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.433 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.242 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582051 SAMN22313519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516807/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.803 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.696 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.787 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.882 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582052 SAMN22313183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516810/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.546 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.183 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.4 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582053 SAMN22313518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516870/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.339 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.784 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.287 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582054 SAMN22313182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10516908/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.056 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.966 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.449 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582055 SAMN22312824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10516933/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.003 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.064 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.042 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582056 SAMN22313517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517012/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.931 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.991 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.975 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.136 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582057 SAMN22313181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517177/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.293 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.277 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.619 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.765 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582058 SAMN22313063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517193/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.438 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.753 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.383 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.359 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582059 SAMN22313516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517216/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.945 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.361 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.851 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.132 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582060 SAMN22313180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517220/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.184 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.146 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.461 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.733 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582061 SAMN22313062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517224/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.758 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.95 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.957 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582062 SAMN22313061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517284/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.565 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.135 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.404 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582063 SAMN22313179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517286/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.595 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.709 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.776 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.605 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582064 SAMN22313178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517290/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.691 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.364 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.592 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.172 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582065 SAMN22313177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517397/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.758 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.841 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.843 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.589 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582066 SAMN22313060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517354/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.271 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.258 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.561 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582067 SAMN22313515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517405/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.884 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.556 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.839 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582068 SAMN22313059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517418/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.519 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.065 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.62 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.517 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582069 SAMN22313176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517431/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.707 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.622 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.764 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.693 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582070 SAMN22313058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517509/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.269 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.118 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.103 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.969 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582071 SAMN22313175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517450/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.08 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.102 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.996 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.782 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582072 SAMN22313057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517518/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.081 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.945 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.175 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582073 SAMN22312855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TX-CDC-MMB10517537/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.346 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.512 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.686 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.484 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582074 SAMN22313174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517577/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.028 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.064 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.999 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.523 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582075 SAMN22313173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517579/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.571 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.314 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.244 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582076 SAMN22313172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517611/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.032 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.164 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.01 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.815 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582077 SAMN22313171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517666/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.084 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.036 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.777 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582078 SAMN22313514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517678/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.327 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.917 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.129 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582079 SAMN22313363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10434409/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.288 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.277 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.558 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.279 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582080 SAMN22313647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10434719/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.74 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.638 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.186 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.81 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582081 SAMN22313362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435013/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.903 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.547 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.454 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582082 SAMN22313646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10435052/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.681 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.038 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.905 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582083 SAMN22313361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435063/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.446 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.1 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.288 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582084 SAMN22313360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435106/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.702 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.39 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.563 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.324 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582085 SAMN22313359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435209/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.994 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.658 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.783 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582086 SAMN22313645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10435308/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.534 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.304 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.57 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582087 SAMN22313358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435362/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.912 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.924 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.634 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582088 SAMN22312972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10435482/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.083 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.636 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.541 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582089 SAMN22313026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10435530/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.299 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.828 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.698 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582090 SAMN22313357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435728/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.088 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.985 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.787 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582091 SAMN22313356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435791/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.803 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.078 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.975 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582092 SAMN22313355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10435945/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.884 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.625 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.243 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582093 SAMN22313354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10436074/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.167 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.728 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.313 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.777 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582094 SAMN22313353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10436133/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.452 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.032 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.736 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.643 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582095 SAMN22313352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10436343/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.063 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.127 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.175 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.544 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582096 SAMN22313025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10436410/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.822 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.551 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.199 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582097 SAMN22313351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10436433/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.696 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.547 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582098 SAMN22313644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10436595/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.063 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.761 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.815 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.857 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582099 SAMN22313102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10436768/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.688 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.353 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.063 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.097 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582100 SAMN22313114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB10436806/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.79 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.799 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.378 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582101 SAMN22313024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10436974/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.976 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.104 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582102 SAMN22313350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10437382/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.255 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.529 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.588 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582103 SAMN22312837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10437596/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.586 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.243 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.059 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.052 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582104 SAMN22313398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/FL-CDC-MMB10437737/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.495 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.86 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.92 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.798 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582105 SAMN22313349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10437742/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.448 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.854 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.747 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.451 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582106 SAMN22313348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438015/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.098 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.589 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.075 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.83 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582107 SAMN22313347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438331/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.854 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.654 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.233 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582108 SAMN22313346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438366/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.831 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.002 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582109 SAMN22313345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438444/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.326 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.893 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.032 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.98 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582110 SAMN22313344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438478/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.004 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.597 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.687 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.527 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582111 SAMN22313271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509740/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.103 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.979 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.421 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582112 SAMN22313270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509746/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.085 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.353 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.233 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582113 SAMN22313269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509789/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.91 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.814 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.974 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582114 SAMN22312896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10509852/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.384 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.283 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.654 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.686 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582115 SAMN22313078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10509874/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.292 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.872 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.831 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.489 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582116 SAMN22313268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509915/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.624 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.642 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.619 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582117 SAMN22313267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509938/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.346 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.226 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.629 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.609 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582118 SAMN22313266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509950/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.048 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.188 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582119 SAMN22313265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509992/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.854 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.337 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.919 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582120 SAMN22312995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10510076/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.29 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.742 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.745 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.926 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582121 SAMN22313264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510100/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.204 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.72 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.632 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.294 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582122 SAMN22313263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510151/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.8 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.537 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.077 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582123 SAMN22312831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10510238/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.826 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.962 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.889 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582124 SAMN22313262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510263/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.964 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.606 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.002 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.721 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582125 SAMN22313261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510275/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.858 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.633 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.145 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582126 SAMN22313260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510299/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.373 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.776 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.926 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582127 SAMN22313259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510304/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.828 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.906 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.163 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582128 SAMN22313077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10510373/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.325 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.996 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.233 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.943 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582129 SAMN22313258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510517/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.788 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.63 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.855 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.009 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582130 SAMN22312994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10510600/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.33 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.9 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.386 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582131 SAMN22313558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10510644/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.982 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.12 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.393 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582132 SAMN22313257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510649/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.635 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.553 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.834 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582133 SAMN22313256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510766/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.39 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.831 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.204 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582134 SAMN22313557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10510848/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.03 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.761 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.353 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582135 SAMN22313556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10510850/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.715 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.114 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.278 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582136 SAMN22313255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510857/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.986 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.938 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.38 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.683 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582137 SAMN22313254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510884/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.69 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.623 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.803 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.218 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582138 SAMN22313555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10510896/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.892 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.872 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.021 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.54 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582139 SAMN22313554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10510914/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.518 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.435 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.403 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.653 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582140 SAMN22313553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10510959/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.942 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.926 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.03 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.907 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582141 SAMN22313253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511016/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.576 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.064 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582142 SAMN22313252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511093/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.499 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.943 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.626 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582143 SAMN22313602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494334/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.061 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.842 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.276 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.607 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582144 SAMN22313601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494372/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.058 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.208 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582145 SAMN22313600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494386/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.272 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.973 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.397 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.309 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582146 SAMN22313599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494511/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 54 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.882 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.705 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582147 SAMN22313598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494521/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.314 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.472 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582148 SAMN22313597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494527/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.192 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.813 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.736 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582149 SAMN22313300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10494589/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.913 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.136 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.611 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.419 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582150 SAMN22313087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10495172/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.28 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.727 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.695 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.39 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582151 SAMN22313086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10495203/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.921 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.385 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.157 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.77 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582152 SAMN22313596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495355/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.655 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.829 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.128 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582153 SAMN22313595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495708/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.382 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.111 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.88 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582154 SAMN22313594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495740/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.226 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.342 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.997 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582155 SAMN22313593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495757/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.882 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.22 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.001 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582156 SAMN22313299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10495771/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.333 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 34.157 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.117 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.1 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582157 SAMN22313592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495822/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.101 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.881 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.544 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582158 SAMN22313591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495853/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.86 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.122 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582159 SAMN22313590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10495913/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.084 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.365 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.267 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582160 SAMN22313589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10496138/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.656 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.899 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.478 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582161 SAMN22313117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/IN-CDC-MMB10496425/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.788 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.122 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.003 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.336 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582162 SAMN22313588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10496817/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.614 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.088 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.845 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.128 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582163 SAMN22313298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10497279/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.233 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.156 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.059 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582164 SAMN22313587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10497367/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.642 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.407 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.769 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.002 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582165 SAMN22313586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10497731/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.728 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.626 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.773 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582166 SAMN22313585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10498217/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.664 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.346 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.843 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.684 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582167 SAMN22312956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10498714/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.727 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.306 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.994 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.866 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582168 SAMN22313584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10498903/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.404 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.438 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.97 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582169 SAMN22313583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10498937/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.11 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.736 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.372 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582170 SAMN22313582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10499183/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.066 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.753 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.072 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.227 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582171 SAMN22312955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10499359/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.371 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.317 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.512 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582172 SAMN22313001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10500522/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.685 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.13 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.736 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582173 SAMN22313581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10500759/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.418 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.172 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.605 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.914 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582174 SAMN22312954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10500764/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.966 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.267 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.895 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582175 SAMN22313170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517716/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.269 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.825 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.509 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582176 SAMN22313513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517718/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.537 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.638 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.943 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582177 SAMN22313512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517762/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.395 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.984 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.969 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.392 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582178 SAMN22313169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517776/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.629 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.223 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.797 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582179 SAMN22313511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517816/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.217 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.323 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.56 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582180 SAMN22312892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10517818/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.468 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.57 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.723 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582181 SAMN22313168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517828/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.709 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.583 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.762 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.339 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582182 SAMN22313056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10517833/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.331 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.018 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.627 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.29 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582183 SAMN22313510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517980/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.655 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.837 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.743 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 38.29 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582184 SAMN22313167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517918/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.844 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.83 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582185 SAMN22313032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB10517988/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.44 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.337 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.615 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.409 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582186 SAMN22313113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB10518025/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.184 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.639 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.94 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 38.857 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582187 SAMN22313166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10518032/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.837 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.941 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.828 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582188 SAMN22313031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB10518058/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.723 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.073 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.119 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.065 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582189 SAMN22313165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10518059/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.501 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.013 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.874 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.946 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582190 SAMN22313164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10518173/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.132 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.912 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.164 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.098 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582191 SAMN22313509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10518407/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.67 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.642 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.755 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582192 SAMN22313163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10518520/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.201 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.876 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.345 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.601 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582193 SAMN22313508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10518697/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.955 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.735 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582194 SAMN22313162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10518715/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.186 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.931 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.231 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.366 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582195 SAMN22312823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10518727/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.86 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.736 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.116 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.78 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582196 SAMN22313055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10518830/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.82 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.275 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.857 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582197 SAMN22313507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519003/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.527 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.875 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.647 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.166 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582198 SAMN22313161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519029/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.408 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.167 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582199 SAMN22313506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519186/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.271 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.193 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.605 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.69 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582200 SAMN22313054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10519209/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.856 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.913 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.871 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.087 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582201 SAMN22313505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519322/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.232 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.116 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.304 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.069 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582202 SAMN22313160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519405/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.555 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.57 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.383 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.69 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582203 SAMN22313159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519417/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.916 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.106 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.861 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.168 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582204 SAMN22313504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519458/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.109 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.957 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.415 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.58 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582205 SAMN22313158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519541/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.445 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.055 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.177 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.558 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582206 SAMN22313053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10519604/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.82 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.966 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.957 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582207 SAMN22312983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10536838/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.687 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.682 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.974 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.118 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582208 SAMN22312843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10537403/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.076 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.14 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.636 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.515 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582209 SAMN22312863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10537430/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.801 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.137 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.942 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582210 SAMN22312862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10537542/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.651 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.234 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.486 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582211 SAMN22313029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MT-CDC-MMB10537685/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 91 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.799 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.571 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582212 SAMN22312842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10537752/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.79 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.873 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.584 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.983 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582213 SAMN22312841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10538155/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 73 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.563 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.175 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.133 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.966 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582214 SAMN22312840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10538208/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.474 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.182 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.988 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.064 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582215 SAMN22312861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10538299/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.012 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.914 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.842 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.444 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582216 SAMN22312839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10538349/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.535 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.465 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.48 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.456 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582217 SAMN22313036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10538423/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.503 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.16 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.464 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.07 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582218 SAMN22313035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10538706/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.569 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.328 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.617 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.508 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582219 SAMN22312838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10538460/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.255 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.597 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.324 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582220 SAMN22312860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10540153/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.203 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.674 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.16 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.767 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582221 SAMN22312859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10540196/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.36 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.128 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.408 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582222 SAMN22313396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10422440/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.811 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.111 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.997 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582223 SAMN22313395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10423847/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.434 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.18 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.382 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582224 SAMN22313028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10424266/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.576 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.556 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.147 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582225 SAMN22313110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10424343/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.688 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.557 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.161 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582226 SAMN22313394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10424348/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.83 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.982 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.881 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582227 SAMN22312948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10424457/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.598 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.934 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.75 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582228 SAMN22313393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10424446/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.455 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.49 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.519 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582229 SAMN22312947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10424682/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.555 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.273 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.074 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582230 SAMN22313392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425019/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.001 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.064 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.398 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582231 SAMN22313391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425041/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.861 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.767 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.549 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582232 SAMN22312945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10425217/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.838 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.129 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.171 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582233 SAMN22312944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10425342/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.686 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.051 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.376 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582234 SAMN22312946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10425125/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.431 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.99 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.859 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.896 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582235 SAMN22312943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10425381/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.802 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.163 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.082 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582236 SAMN22313390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425398/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.017 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.908 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.137 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582237 SAMN22313657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10425754/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.171 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.459 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.639 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582238 SAMN22313389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10425849/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.686 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.032 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 39.442 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.719 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582240 SAMN22312941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10426175/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.598 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.535 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.608 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582241 SAMN22313656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10426183/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.99 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.082 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.497 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582242 SAMN22313655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10426407/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.852 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.308 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.891 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.49 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582243 SAMN22313387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426555/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.564 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.334 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.798 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.809 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582244 SAMN22313388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426469/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.868 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.92 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.441 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582245 SAMN22313386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426772/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.544 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.923 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.044 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.252 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582246 SAMN22313385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426844/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.065 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.032 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.326 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582247 SAMN22313384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10426945/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.881 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.648 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.787 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.724 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582239 SAMN22312942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10426166/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.868 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.338 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582248 SAMN22313109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10427189/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.44 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.153 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.469 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.575 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582249 SAMN22313383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10427331/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.366 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.848 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.064 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582250 SAMN22313654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10427514/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.887 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.104 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.039 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.704 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582251 SAMN22313382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428085/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.801 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.743 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.756 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582252 SAMN22313116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB10428108/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.863 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.095 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.453 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582253 SAMN22313115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/KY-CDC-MMB10428248/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.773 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.002 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582254 SAMN22313643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10438530/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.749 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.596 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.415 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582255 SAMN22313343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438593/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.477 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.926 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.028 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.656 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582256 SAMN22313342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438605/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.84 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.363 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.911 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.938 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582257 SAMN22313642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10438877/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.986 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.129 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.549 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.878 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582258 SAMN22313341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10438897/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.389 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.665 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.898 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.031 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582259 SAMN22313641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10439101/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.735 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.605 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.845 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582260 SAMN22313640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10439315/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.082 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.85 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.611 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582261 SAMN22313340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10439377/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.13 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.932 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.805 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582262 SAMN22313339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10439458/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.946 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.54 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.201 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.584 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582263 SAMN22313338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10439548/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.356 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.786 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.759 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582264 SAMN22313337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10439557/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.995 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.4 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.675 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582265 SAMN22313101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10439589/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.263 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.698 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.748 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582266 SAMN22313336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10439608/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.495 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.553 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.776 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.453 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582267 SAMN22313100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10439851/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.45 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.419 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.921 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.474 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582268 SAMN22313639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10439900/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.607 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.877 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.58 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.036 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582269 SAMN22313335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10440061/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.161 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.014 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.517 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.064 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582270 SAMN22313334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10440658/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.669 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.113 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.838 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582271 SAMN22313638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10441137/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.506 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.722 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.68 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.893 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582272 SAMN22313333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10441844/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.044 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.815 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.334 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582273 SAMN22313023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10442307/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.027 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.713 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582274 SAMN22313637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10442333/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.479 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.076 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.619 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582275 SAMN22313022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10442357/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.574 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.927 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.922 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.61 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582276 SAMN22313636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10442748/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.514 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.67 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.571 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.804 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582277 SAMN22313099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10443469/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.461 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.623 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582278 SAMN22313020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10443261/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.765 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.478 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.955 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.846 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582279 SAMN22313021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10443033/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.519 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.996 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.613 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.816 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582280 SAMN22313635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10443513/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.228 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.901 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.347 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582281 SAMN22312971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10443536/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.448 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.049 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.246 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582282 SAMN22313634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10443586/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.024 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.143 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.964 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582283 SAMN22313019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10443664/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.947 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.825 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.978 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582284 SAMN22313098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10444147/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.755 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.384 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.97 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582285 SAMN22313633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10444704/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.76 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.204 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.738 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.254 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582286 SAMN22313018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10444781/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.855 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.5 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.207 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.13 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582287 SAMN22313017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10444800/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.482 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.317 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.02 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.949 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582288 SAMN22313016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10445234/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.784 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.028 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.02 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582289 SAMN22313632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445275/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.778 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.381 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.156 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582290 SAMN22313015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10445354/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.7 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.213 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.098 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.998 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582291 SAMN22313631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445639/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.137 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.476 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582292 SAMN22312973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NY-CDC-MMB10445767/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.63 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.552 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.282 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582293 SAMN22313097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10445869/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.448 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.988 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.01 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.734 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582294 SAMN22313096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10445873/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.363 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.616 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582295 SAMN22313630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10445977/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.081 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.704 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.065 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582296 SAMN22313629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10447198/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.677 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.809 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.385 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.794 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582297 SAMN22313628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10447344/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.28 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.261 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.278 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582298 SAMN22313627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10447522/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.911 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.038 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.285 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582299 SAMN22312853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10448189/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.961 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.004 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.354 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.92 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582300 SAMN22312852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10448244/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.285 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.643 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.74 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.066 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582301 SAMN22312851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10448635/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.641 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.483 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.972 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582302 SAMN22312850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10449082/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.839 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.141 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.01 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582303 SAMN22312849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10449175/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.954 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.713 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.088 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.569 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582304 SAMN22312848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10449270/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.828 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.492 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.924 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.873 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582305 SAMN22312847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10449275/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.559 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.695 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.6 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582306 SAMN22312846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10449413/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.06 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.811 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.842 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582307 SAMN22312845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10450158/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.675 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.858 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.201 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.899 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582308 SAMN22312920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10451065/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.516 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.315 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.816 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582309 SAMN22313014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10451100/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.018 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.959 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.222 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582310 SAMN22313013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10451318/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.529 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.159 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.403 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582311 SAMN22312919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10451745/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.245 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.132 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.565 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582312 SAMN22312918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10451761/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.382 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.995 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.598 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.401 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582313 SAMN22313012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10451748/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.769 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.417 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582314 SAMN22312917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10451763/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 51 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.913 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.641 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.018 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.987 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582315 SAMN22312916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10451768/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.545 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.588 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.68 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.476 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582316 SAMN22312915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10451976/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.811 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.45 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.859 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.325 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582317 SAMN22312914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10452132/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.697 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.83 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582318 SAMN22313580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10500961/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.702 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.169 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.798 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582319 SAMN22313579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10501038/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.421 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.929 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.931 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582320 SAMN22313578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10501213/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.494 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.132 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.826 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.354 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582321 SAMN22313577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10502343/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.687 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.37 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.116 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582322 SAMN22313576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10502670/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.378 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.754 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.741 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.003 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582323 SAMN22312953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10502958/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.634 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.239 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.466 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.391 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582324 SAMN22313575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503062/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.63 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.294 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.065 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582325 SAMN22313574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503067/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.817 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.522 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.737 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.164 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582326 SAMN22313573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503123/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.583 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.513 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582327 SAMN22313571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503383/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.681 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.406 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.075 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.172 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582328 SAMN22313572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503228/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.26 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.935 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.798 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.131 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582329 SAMN22313570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503535/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.583 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.51 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582330 SAMN22313034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MI-CDC-MMB10503603/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.685 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.217 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.386 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582331 SAMN22313569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503740/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.618 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.834 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.014 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582332 SAMN22313568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10503987/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.458 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.216 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.738 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.326 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582333 SAMN22313567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504249/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.024 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.866 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.378 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582334 SAMN22313566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504501/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.267 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.272 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.847 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.81 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582335 SAMN22313565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504581/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.084 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.226 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.56 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.424 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582336 SAMN22313563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504628/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.333 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.033 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.424 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.21 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582337 SAMN22313564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504595/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.216 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.35 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.134 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.76 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582338 SAMN22313562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504819/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.15 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.517 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.259 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582339 SAMN22313561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10504951/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.324 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.115 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.474 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.634 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582340 SAMN22313000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10504957/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.725 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.621 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.484 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.72 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582341 SAMN22313560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10505051/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.171 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.093 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.149 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.693 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582342 SAMN22313559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10505094/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.242 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.062 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.622 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.269 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582343 SAMN22312897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10506275/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.096 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.679 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.963 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.827 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582344 SAMN22312999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10507307/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.455 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.267 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.422 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582345 SAMN22313297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10507756/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.413 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.291 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.597 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.272 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582346 SAMN22313296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508003/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.2 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.689 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.151 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.481 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582347 SAMN22313295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508182/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.994 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.55 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.091 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.489 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582348 SAMN22313085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10508259/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.069 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.884 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.053 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582349 SAMN22313294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508287/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.369 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.492 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.219 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.847 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582350 SAMN22313293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508290/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.927 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.527 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.84 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582351 SAMN22313292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508328/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.886 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.297 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.439 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582352 SAMN22313291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508335/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.966 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.747 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.014 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.399 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582353 SAMN22313290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508438/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.281 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.379 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.052 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.531 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582354 SAMN22313084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10508526/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.418 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.296 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.638 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582355 SAMN22313289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508565/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.328 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.54 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.008 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582356 SAMN22313288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508628/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.707 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.363 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.532 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582357 SAMN22313287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508645/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.389 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.842 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.732 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582358 SAMN22313286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508743/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.803 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.17 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.604 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582359 SAMN22313285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508821/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.437 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.074 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.658 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582360 SAMN22313083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10508890/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.531 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.954 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.412 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.096 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582361 SAMN22312998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10508899/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.497 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.301 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.405 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.62 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582362 SAMN22312997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10508907/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.449 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.146 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582363 SAMN22313082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10509016/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.521 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.046 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.885 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.851 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582364 SAMN22313284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509021/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.736 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.404 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.572 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582365 SAMN22312996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10509107/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.212 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.226 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582366 SAMN22313283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509329/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.607 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.696 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.489 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582367 SAMN22313282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509333/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.526 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.529 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.437 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582368 SAMN22313281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509357/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.501 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.648 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.597 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582369 SAMN22313280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509377/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.964 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.474 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.035 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582370 SAMN22313279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509388/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.027 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.275 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.259 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582371 SAMN22313278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509423/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.329 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.539 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.749 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.749 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582372 SAMN22313277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509445/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.648 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.192 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.373 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582373 SAMN22313081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10509596/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.076 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.748 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.941 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.976 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582374 SAMN22313276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509626/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.002 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.427 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.21 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.837 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582375 SAMN22313275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509645/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.283 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.344 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.761 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582376 SAMN22313273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509700/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.918 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.742 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.819 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.75 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582377 SAMN22313274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509667/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.858 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.419 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.707 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.036 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582378 SAMN22312933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10509716/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.986 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.406 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582379 SAMN22313080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10509722/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.45 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.444 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.837 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582380 SAMN22313272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509724/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.016 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.366 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.122 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.011 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582381 SAMN22313079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10509737/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.66 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.159 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.76 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582382 SAMN22313251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511115/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.552 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.281 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582383 SAMN22313250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511138/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.971 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.811 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.074 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582384 SAMN22312830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10511154/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.618 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.924 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.917 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582385 SAMN22313249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511185/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.069 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.742 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.953 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.45 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582386 SAMN22312952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10511369/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 94 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.877 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.46 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.776 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582387 SAMN22313552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10511375/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.074 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.395 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.343 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.146 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582388 SAMN22313248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511385/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.555 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.83 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.989 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582389 SAMN22313551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10511431/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.06 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.891 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.234 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582390 SAMN22313247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511441/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.496 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.872 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.27 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582391 SAMN22313246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511444/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.973 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.58 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.922 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.709 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582392 SAMN22313245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511542/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.312 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.217 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 35.243 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582393 SAMN22313244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511670/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.263 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.183 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.532 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.488 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582394 SAMN22313242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511800/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.827 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.11 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.923 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.815 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582395 SAMN22313243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511723/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.65 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.678 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.773 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582396 SAMN22313241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511821/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.244 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.135 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.505 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.943 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582397 SAMN22313240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511842/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.332 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.266 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.221 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.412 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582398 SAMN22313550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10511872/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.573 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.58 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.618 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.574 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582399 SAMN22313239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511880/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.922 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.564 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.025 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.521 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582400 SAMN22313238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10511928/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.597 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.387 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.708 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.177 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582401 SAMN22312829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10511995/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.966 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.03 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.333 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.883 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582402 SAMN22313237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512151/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.199 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.38 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.169 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.514 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582403 SAMN22313235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512196/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.288 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.706 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.363 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.729 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582404 SAMN22313236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512162/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.851 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.413 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.188 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.532 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582405 SAMN22313234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512217/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.436 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.866 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.479 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582406 SAMN22313549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10512264/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.017 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.933 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582407 SAMN22313548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10512275/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.393 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.517 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.386 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582408 SAMN22313547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10512435/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.877 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.938 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.035 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582409 SAMN22313232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512442/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.04 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.818 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.108 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582410 SAMN22313233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512316/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.722 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.832 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.934 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.899 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582411 SAMN22313076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10512559/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.908 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.481 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582412 SAMN22313231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512582/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.431 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.076 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.699 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.638 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582413 SAMN22312857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TX-CDC-MMB10512610/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.425 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.062 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.87 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.653 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582414 SAMN22313503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519661/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.769 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.202 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.322 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.14 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582415 SAMN22313157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519712/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.314 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.127 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.287 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582416 SAMN22313502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519769/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.001 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.325 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.141 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.895 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582417 SAMN22313156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519908/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.476 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.068 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.475 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.663 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582418 SAMN22313501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519913/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.798 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.418 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.005 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582419 SAMN22313155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10519925/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.281 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.538 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.951 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.223 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582420 SAMN22313500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519956/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.085 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.1 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.649 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.371 lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582421 SAMN22313052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10519982/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.639 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.685 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582422 SAMN22313154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10520254/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.706 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.233 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.836 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.776 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582423 SAMN22313153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10520276/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.889 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.303 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.221 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582424 SAMN22313499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520279/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.196 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.408 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582425 SAMN22313497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520434/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.626 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.668 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.142 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582426 SAMN22313498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520377/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.35 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.244 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.545 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.424 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582427 SAMN22313496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520455/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.65 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.186 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.749 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582428 SAMN22313495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520481/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.243 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.869 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.215 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.598 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582429 SAMN22313051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10520485/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.153 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.996 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.121 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582430 SAMN22313494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520517/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.037 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.681 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.149 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.028 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582431 SAMN22312992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10520633/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.289 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.271 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.143 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.328 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582432 SAMN22313050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10520777/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.003 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.467 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.053 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582433 SAMN22313152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10520778/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.443 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.444 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.371 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582434 SAMN22312929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10520866/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.001 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.432 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.728 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582435 SAMN22313493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521025/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.748 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.422 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.653 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582436 SAMN22313151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521012/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.38 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.49 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.379 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.393 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582437 SAMN22313492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521103/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.124 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.424 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.258 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.153 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582438 SAMN22313150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521119/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.337 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.239 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.119 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.93 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582439 SAMN22313491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521285/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.415 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.219 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582440 SAMN22313149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521191/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.074 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.198 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.685 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582441 SAMN22313148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521297/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.399 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.311 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.259 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.588 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582442 SAMN22312822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10521333/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.534 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.031 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.758 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582443 SAMN22313147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521440/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.796 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.612 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.17 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.439 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582444 SAMN22313146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521594/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.219 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.549 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.476 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.363 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582445 SAMN22313145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521687/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.332 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.591 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.133 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582446 SAMN22313129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525212/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.835 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.195 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582447 SAMN22313128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525255/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.085 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.503 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.693 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582448 SAMN22313118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ID-CDC-MMB10525312/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.936 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.683 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.226 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582449 SAMN22313457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525347/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.821 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.682 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582450 SAMN22313127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525466/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.432 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.425 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.82 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582451 SAMN22313126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525467/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.71 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.822 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.973 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582452 SAMN22313125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525487/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.115 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.793 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.563 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582453 SAMN22312950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10525542/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.321 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.057 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.932 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582454 SAMN22313124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525567/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.967 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.754 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.715 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582455 SAMN22313456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525544/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.734 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.804 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.428 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.186 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582456 SAMN22313455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525554/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.181 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.569 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.682 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.697 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582457 SAMN22313454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525581/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.187 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.947 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.104 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.584 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582458 SAMN22312987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10525626/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.94 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.751 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.218 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.448 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582459 SAMN22312923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10525644/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.325 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.486 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.982 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.374 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582460 SAMN22313453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525676/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.318 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.678 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.076 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582461 SAMN22312949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10525648/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.332 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.872 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.411 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582462 SAMN22313452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525717/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.329 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.747 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.374 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.751 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582463 SAMN22313451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525814/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.821 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.326 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.783 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.729 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582464 SAMN22313450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10525825/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.58 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.933 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.945 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582465 SAMN22313123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10525908/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.774 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.017 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.452 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.553 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582466 SAMN22313449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526069/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.14 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.848 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582467 SAMN22313048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10526113/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.071 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.886 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.212 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582468 SAMN22313448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526214/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.593 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.343 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.393 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.775 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582469 SAMN22313447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526460/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.322 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.871 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.631 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582470 SAMN22313446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526660/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.457 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.182 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.645 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582471 SAMN22312922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10526599/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.679 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.36 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.952 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.622 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582472 SAMN22313122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10526681/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 33.106 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 34.441 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.816 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.987 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582473 SAMN22313445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526751/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.1 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.579 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.26 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.163 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582474 SAMN22313444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526765/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.893 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.998 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.042 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.351 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582475 SAMN22313443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526840/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.034 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.287 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582476 SAMN22313442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527100/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.978 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.018 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.428 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.651 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582477 SAMN22312858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TN-CDC-MMB10527319/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.345 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.248 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.541 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.468 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582478 SAMN22312854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10359340/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.31 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.413 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.931 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582479 SAMN22313112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10421729/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.468 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.501 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.769 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.606 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582480 SAMN22313111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10422387/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.127 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.549 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.375 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.274 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582481 SAMN22313397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10421901/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.279 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.203 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.605 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.861 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582482 SAMN22313230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512687/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.533 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.78 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.947 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582483 SAMN22312951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10512803/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.342 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.865 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.465 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582484 SAMN22313075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10512771/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.293 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.325 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.372 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.361 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582485 SAMN22313546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10512861/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.204 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.759 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582486 SAMN22313074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10512912/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.948 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.741 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.031 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582487 SAMN22313229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512924/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race N collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.152 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.67 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.372 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.887 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582488 SAMN22313228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10512982/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.354 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.951 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.077 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.076 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582489 SAMN22313073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10513000/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.539 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.402 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.818 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.19 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582490 SAMN22313227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513050/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.589 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.792 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.097 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582491 SAMN22313545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10513056/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.08 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.96 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.321 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.987 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582492 SAMN22313544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10513218/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.03 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582493 SAMN22312895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10513113/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.864 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.919 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.337 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.778 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582494 SAMN22313225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513392/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.852 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.149 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.619 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.947 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582495 SAMN22313226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513264/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.689 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.272 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.763 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.383 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582496 SAMN22313224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513426/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.647 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.638 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.638 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582497 SAMN22313543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10513533/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.495 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.708 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.101 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582498 SAMN22312932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10513546/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.774 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.429 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.811 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582499 SAMN22313223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513583/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.811 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.47 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.545 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582500 SAMN22313222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513603/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.957 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.984 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.502 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.856 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582501 SAMN22313072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10513677/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.706 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.332 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.728 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.446 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582502 SAMN22313221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513726/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.831 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.678 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.849 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582503 SAMN22313069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10513859/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.534 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.349 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.432 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582504 SAMN22313070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10513851/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.992 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.237 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.749 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582505 SAMN22313071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10513812/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.295 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.429 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.453 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582506 SAMN22313542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10513881/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.921 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.615 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.739 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.344 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582507 SAMN22313220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10513914/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.473 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.792 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 37.66 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.081 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582508 SAMN22313068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10513940/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.7 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.714 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.802 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.12 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582509 SAMN22313541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10514009/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.097 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.178 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.682 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582510 SAMN22313540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10514058/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.873 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.632 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.841 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582511 SAMN22313219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514075/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.622 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.407 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.617 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.829 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582512 SAMN22312828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10514093/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.969 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.786 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582513 SAMN22313218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514137/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.471 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.498 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.399 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.866 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582514 SAMN22313011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10452165/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.075 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.111 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.121 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582515 SAMN22312913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10452193/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.704 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.979 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.819 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582516 SAMN22312912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10452227/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.835 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.913 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.424 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582517 SAMN22312911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10452239/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.146 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.807 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.258 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.34 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582518 SAMN22313010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10452421/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.097 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.712 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.548 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.854 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582519 SAMN22312910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10452284/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.687 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.092 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.94 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582520 SAMN22313095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10453005/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.538 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.221 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.578 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.92 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582521 SAMN22313332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453180/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.063 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.115 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.982 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582522 SAMN22312940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10453739/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.423 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.082 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.917 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582523 SAMN22313331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10453428/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.256 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.358 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.717 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582524 SAMN22312909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10455972/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.726 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.816 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582525 SAMN22313330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10456100/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.101 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.037 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.26 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.945 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582526 SAMN22313329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10456390/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.722 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.55 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.04 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.255 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582527 SAMN22313328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10456835/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.725 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.568 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.097 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.686 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582528 SAMN22312970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10458381/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.66 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.924 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582529 SAMN22313094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10458494/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.287 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.721 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.815 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582530 SAMN22313327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10459066/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.824 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.44 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.382 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582531 SAMN22313326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10459865/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.906 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.513 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.132 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.919 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582532 SAMN22313009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10459974/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.972 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.793 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.047 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582533 SAMN22313325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10461330/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.799 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.192 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.833 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.677 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582534 SAMN22313658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/AL-CDC-MMB10461656/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.133 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.421 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.01 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582535 SAMN22313093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10462507/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.905 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.405 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.896 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582536 SAMN22313324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10462528/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.001 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.369 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.42 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.385 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582537 SAMN22312908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10463150/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.916 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.98 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.032 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582538 SAMN22313008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10463219/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.935 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.699 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.252 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.144 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582539 SAMN22313323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10463931/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.743 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.896 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.895 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.604 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582540 SAMN22312907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10464469/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.247 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.219 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.289 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.647 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582541 SAMN22313322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10464995/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.138 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.123 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.222 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.777 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582542 SAMN22312906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10465079/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.403 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.061 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.537 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582543 SAMN22312969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10466180/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 34.286 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.166 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.089 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582544 SAMN22313321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10466349/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.304 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.257 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.773 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.758 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582545 SAMN22312939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10468079/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.247 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.073 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.608 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.059 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582546 SAMN22313381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428331/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.657 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.557 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.857 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.982 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582547 SAMN22313380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428420/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.36 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.628 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.083 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.776 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582548 SAMN22313379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10428513/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.673 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.642 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.129 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.61 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582549 SAMN22313378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429000/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.391 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.272 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.785 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.447 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582551 SAMN22313377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10429327/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.459 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.357 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582550 SAMN22313653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10429182/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.661 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.659 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.803 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.78 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582552 SAMN22313108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10429707/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.012 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.564 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582553 SAMN22313027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10430007/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.938 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.203 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582554 SAMN22313376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430251/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.731 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.789 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.367 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.45 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582555 SAMN22313375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430723/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.255 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.308 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.611 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.16 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582556 SAMN22313374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10430977/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.617 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.413 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.248 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.065 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582557 SAMN22313107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10431138/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.821 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.373 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.093 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.447 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582558 SAMN22313652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10431237/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.239 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.325 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.821 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582559 SAMN22313373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431402/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.316 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.442 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.744 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582560 SAMN22313372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431638/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.15 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.175 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.979 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582561 SAMN22313371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431690/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.222 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.71 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.461 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.345 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582562 SAMN22313370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431917/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.173 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.719 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.96 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582563 SAMN22313651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10432205/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.479 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.929 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.513 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.21 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582564 SAMN22313369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10431980/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.481 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.268 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.629 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582565 SAMN22312921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10432293/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.081 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.548 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.738 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.58 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582566 SAMN22313368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10432452/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.449 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.897 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.525 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.432 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582567 SAMN22313367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10432522/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.072 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.484 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.889 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582568 SAMN22313650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10432936/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.031 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.987 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.91 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582569 SAMN22313366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10432951/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.451 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.665 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.812 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.659 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582570 SAMN22313365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10433154/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.769 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.876 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.593 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.169 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582571 SAMN22313106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10433235/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.36 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.181 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.718 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.882 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582572 SAMN22313104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10433353/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.83 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.5 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.924 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.889 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582573 SAMN22313105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10433245/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.968 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.504 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.386 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.471 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582574 SAMN22313649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10433647/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.417 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.601 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.889 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582575 SAMN22313364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10434077/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.691 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.176 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.184 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582576 SAMN22313103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10434237/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.565 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.485 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.785 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.285 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582577 SAMN22313648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10434268/2021 collected_by Mako Medical collection_date 2021-09-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.853 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.85 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.084 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.622 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582578 SAMN22313539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10514162/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.599 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.837 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.336 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582579 SAMN22313538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10514175/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.795 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.004 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.53 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582580 SAMN22313217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514181/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.05 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.336 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.433 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.696 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582581 SAMN22313216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514344/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.275 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.909 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.405 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.983 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582582 SAMN22313215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514376/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.069 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.495 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582583 SAMN22313214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514422/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.276 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 33.491 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.917 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.258 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582584 SAMN22313212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514573/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.862 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.498 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.796 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.147 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582585 SAMN22313213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514462/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.416 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.85 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.229 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582586 SAMN22313067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10514674/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.779 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.599 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.981 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582587 SAMN22313537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10514652/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.226 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.26 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.199 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582588 SAMN22313211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514648/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.735 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.089 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.814 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582589 SAMN22313210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514697/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.487 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.609 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.955 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582590 SAMN22313209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514716/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.534 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.922 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.463 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.056 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582591 SAMN22313536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10514721/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.059 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.166 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.927 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582592 SAMN22313208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514735/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.26 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.158 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.226 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582593 SAMN22313207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514767/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.707 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.135 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.503 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.12 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582594 SAMN22312931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10514774/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.367 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.515 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.238 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.42 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582595 SAMN22312826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10514874/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.474 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.88 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.898 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.006 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582596 SAMN22312827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10514837/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.528 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.554 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.808 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.669 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582597 SAMN22313205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515076/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.525 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.3 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.484 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582598 SAMN22313206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514881/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.261 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.776 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.101 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.242 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582599 SAMN22313535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10515122/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.868 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.392 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.767 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582600 SAMN22312856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TX-CDC-MMB10515264/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.754 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.926 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.485 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582601 SAMN22313534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10515137/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.566 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.254 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.672 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.55 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582602 SAMN22313033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MO-CDC-MMB10515154/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.918 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.787 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.73 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.589 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582603 SAMN22312993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10515251/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.363 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.916 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.495 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.853 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582604 SAMN22313204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515341/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.718 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.397 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.991 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582605 SAMN22313203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515360/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.696 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.176 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.945 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582606 SAMN22313202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515412/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.276 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.532 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.871 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582607 SAMN22313200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515450/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.747 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.143 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.879 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.497 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582608 SAMN22313201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515439/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.818 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.847 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.202 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.324 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582609 SAMN22313199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515480/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.579 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.38 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.985 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.987 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582610 SAMN22312938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10468324/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.245 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.9 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.101 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582611 SAMN22312937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10469928/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.573 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.351 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.851 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.198 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582612 SAMN22313007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10470101/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.629 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.769 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.288 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582613 SAMN22312935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10471397/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.376 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.641 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.761 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.349 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582614 SAMN22312934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10472606/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.552 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.983 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.537 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582615 SAMN22313006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10472094/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.353 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.751 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.417 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582616 SAMN22312936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10469947/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.42 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.597 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.078 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.376 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582617 SAMN22312968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10479162/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 44 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.302 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.56 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.021 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582618 SAMN22313320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10471300/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.504 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.343 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.609 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.698 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582619 SAMN22312967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10479184/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 44 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.665 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.434 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.867 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.22 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582620 SAMN22312905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479897/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 7 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.935 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.896 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.038 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582621 SAMN22312904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10479991/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.354 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.642 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.635 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.552 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582622 SAMN22312903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10480158/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.832 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.588 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.96 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582623 SAMN22312902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10480187/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.425 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.069 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582624 SAMN22312901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10480294/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.075 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.003 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.802 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582625 SAMN22312900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10480322/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.493 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.089 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.692 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.3 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582626 SAMN22312966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10481135/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.376 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.067 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.841 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.808 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582627 SAMN22312899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10480360/2021 collected_by Mako Medical collection_date 2021-09-15 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.398 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.308 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.556 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.01 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582628 SAMN22312965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10481253/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.638 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.316 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.904 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.7 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582629 SAMN22313092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10481509/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.685 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.965 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.035 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.565 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582630 SAMN22313318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10482142/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.003 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.996 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.154 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582631 SAMN22313319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10482098/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.982 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.817 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.054 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582632 SAMN22313317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10482176/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.276 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.599 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.22 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582633 SAMN22313091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10482510/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.245 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.124 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.626 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.015 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582634 SAMN22313090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10482810/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.58 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.453 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.9 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.166 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582635 SAMN22312964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10482785/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.33 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.486 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.675 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.842 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582636 SAMN22312808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WY-CDC-MMB10483012/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.169 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.503 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.125 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582637 SAMN22313316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10483301/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.23 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.153 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.506 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.684 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582638 SAMN22312963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10483837/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.093 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.604 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.447 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.29 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582639 SAMN22313626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10483707/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.752 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.564 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.732 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582640 SAMN22313625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10484163/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.599 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.824 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582641 SAMN22313005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10483959/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.953 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.248 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.457 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.599 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582642 SAMN22313490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521710/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.873 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.759 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.07 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.225 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582643 SAMN22313144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521747/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.122 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.476 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.624 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.418 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582644 SAMN22313489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521724/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.699 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.911 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.814 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582645 SAMN22313143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521830/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.28 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.419 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.151 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.521 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582646 SAMN22313049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10521749/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.183 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.779 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.984 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.834 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582647 SAMN22313142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521832/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.951 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.247 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.341 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582648 SAMN22312821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10521846/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.147 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.744 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.325 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.79 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582649 SAMN22313488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521896/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.473 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.006 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.55 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.916 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582650 SAMN22313487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521980/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.518 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.061 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.281 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582651 SAMN22313141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10521981/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.301 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.985 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.327 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.029 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582652 SAMN22313486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522037/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.761 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 35.591 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.243 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.619 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582653 SAMN22313485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522106/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.629 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.427 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.881 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.827 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582654 SAMN22313140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10522264/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.327 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.783 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.693 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582655 SAMN22312820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10522400/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.64 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.626 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.608 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.148 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582656 SAMN22313484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522447/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.483 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.307 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.785 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582657 SAMN22312991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10522660/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.931 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.848 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.062 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.759 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582658 SAMN22313139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10522787/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.861 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.729 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.833 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.006 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582659 SAMN22313138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10522836/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.306 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.29 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.602 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.375 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582660 SAMN22313483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522892/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.281 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.61 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.148 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.903 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582661 SAMN22313482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522922/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.131 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.635 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582662 SAMN22313137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10522978/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.724 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.882 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.417 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582663 SAMN22313481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523008/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.452 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.741 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.774 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.417 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582664 SAMN22312819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10523024/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.784 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.175 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.768 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582665 SAMN22313480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523055/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.816 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.112 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.996 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.262 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582666 SAMN22313477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523246/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.102 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.694 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.153 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582667 SAMN22313478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523206/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.757 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.672 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.922 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.742 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582668 SAMN22313479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523189/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.014 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.981 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582669 SAMN22313136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10523340/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.397 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.121 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.371 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 40 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582670 SAMN22313476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523426/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.319 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.909 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.649 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.858 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582671 SAMN22313475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523551/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.703 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.071 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.882 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582672 SAMN22313474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523613/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.87 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.366 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.011 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.616 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582673 SAMN22312990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10523622/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.369 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.772 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.052 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582674 SAMN22313441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527420/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.342 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.185 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.732 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582675 SAMN22313440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527439/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.157 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.751 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.358 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.475 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582676 SAMN22313439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527467/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.108 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.321 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.637 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582677 SAMN22313437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527492/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.664 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.241 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.683 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582678 SAMN22313436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527503/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.126 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.717 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.156 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.244 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582679 SAMN22313438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527484/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.167 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.971 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.878 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582680 SAMN22313435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527584/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.88 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.827 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.721 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582681 SAMN22313121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10527597/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.146 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.625 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.959 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.258 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582682 SAMN22313434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527869/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.999 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.32 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.866 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.003 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582683 SAMN22313433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527878/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.569 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.733 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.903 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582684 SAMN22313432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528150/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.938 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.168 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.203 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.599 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582685 SAMN22313430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528192/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.604 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.914 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.292 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582686 SAMN22313431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528158/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.87 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.698 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.835 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582687 SAMN22313429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528197/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.97 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.586 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.576 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582688 SAMN22313428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528208/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.272 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.466 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.369 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.213 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582689 SAMN22313427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528397/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.438 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.962 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.203 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.685 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582690 SAMN22313426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528432/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.56 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.812 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.745 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.723 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582691 SAMN22313425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528440/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.012 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.967 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.016 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.208 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582692 SAMN22313424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528535/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.029 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.649 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.006 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.204 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582693 SAMN22313423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528558/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.609 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.653 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.391 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.355 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582694 SAMN22313422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528654/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.951 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.714 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.798 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582695 SAMN22313421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528678/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.396 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.158 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.387 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582696 SAMN22313420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528716/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.164 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.11 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.703 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.27 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582697 SAMN22313419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528719/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.35 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.402 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.665 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582698 SAMN22313418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528796/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.657 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.474 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582699 SAMN22313416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528841/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.184 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.06 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.818 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582700 SAMN22313417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528822/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.705 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.188 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.397 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.357 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582701 SAMN22313415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528873/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.283 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.087 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.291 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.97 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582702 SAMN22313414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528914/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.997 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.443 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.669 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582703 SAMN22313413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528915/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.43 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.063 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.452 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.684 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582704 SAMN22313411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528976/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.185 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.038 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.354 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.873 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582705 SAMN22313315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10484276/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.154 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.023 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.457 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582706 SAMN22313412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528945/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.353 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.013 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.511 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582707 SAMN22312962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10484286/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.714 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.251 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.051 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.019 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582708 SAMN22313624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10484456/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.684 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.436 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.943 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.209 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582709 SAMN22313314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10484657/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.293 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.09 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.035 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.927 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582710 SAMN22313004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10484871/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.161 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.501 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.601 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582711 SAMN22313623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10485672/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.736 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.606 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.788 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.438 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582712 SAMN22312836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10485909/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.497 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.979 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.674 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582713 SAMN22313622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10486006/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.17 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.796 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.806 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.41 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582714 SAMN22313621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10486026/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.307 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.294 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.597 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 19.91 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582715 SAMN22313313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10486090/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.205 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.201 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.264 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582716 SAMN22313312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10486888/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.429 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.241 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.84 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.599 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582717 SAMN22312898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10486126/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.933 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.412 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.895 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582718 SAMN22313311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10486943/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.857 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.037 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.96 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.375 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582719 SAMN22313310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10487150/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 92 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.747 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.973 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.502 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582720 SAMN22313620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10487321/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.029 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.211 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.464 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582721 SAMN22313309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10487520/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.508 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.577 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.808 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.748 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582722 SAMN22313089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10487763/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.278 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.896 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.708 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.702 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582723 SAMN22313003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10488251/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.845 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.934 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.412 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582724 SAMN22313619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10488243/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.21 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.275 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.676 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582725 SAMN22313308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10488160/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.692 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.715 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.18 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.91 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582726 SAMN22312835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10488892/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.565 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.775 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.841 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.051 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582727 SAMN22313618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10488325/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.386 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.045 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.486 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.902 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582728 SAMN22313617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10488972/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.122 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.199 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.132 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582729 SAMN22313307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10488999/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.559 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.631 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582730 SAMN22313306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10489030/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.958 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.329 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.751 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.536 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582731 SAMN22313615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10489258/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.593 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.297 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.028 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.579 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582732 SAMN22313616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10489197/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.106 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.146 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.737 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.99 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582733 SAMN22313614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10489435/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.336 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.109 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.367 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.522 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582734 SAMN22312834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10489571/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.827 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.909 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.204 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.307 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582735 SAMN22313030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MT-CDC-MMB10489721/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.373 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.354 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.598 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582736 SAMN22313088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10490056/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.578 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 34.504 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 34.267 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.762 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582737 SAMN22313613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10490374/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.167 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.073 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582738 SAMN22313410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529022/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.66 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.963 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.809 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.75 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582739 SAMN22313409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529055/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.252 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.208 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.188 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.516 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582740 SAMN22313408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529075/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.948 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.95 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.994 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.444 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582741 SAMN22313407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529112/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.016 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.469 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.944 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.124 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582742 SAMN22313406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529381/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.617 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.562 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.683 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582743 SAMN22313405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529406/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.899 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.981 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.187 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582744 SAMN22313404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529498/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.416 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.52 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.619 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.101 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582745 SAMN22313402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529589/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.184 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.94 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.451 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582746 SAMN22313403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529538/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.161 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.388 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.949 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582747 SAMN22313401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529709/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.2 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.582 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.968 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582748 SAMN22313400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529789/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.169 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.135 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582749 SAMN22312844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10530476/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.799 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.815 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.232 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.838 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582750 SAMN22312891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530926/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.745 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.055 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.894 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582751 SAMN22312890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530927/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.925 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.502 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.052 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.906 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582752 SAMN22312889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530928/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.121 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.872 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.406 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.228 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582753 SAMN22312888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530946/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 16 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.518 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.087 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.25 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582754 SAMN22312887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530958/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.661 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.312 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.436 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582755 SAMN22312886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530960/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.95 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.72 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.954 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.296 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582756 SAMN22312885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530969/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.99 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.414 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.244 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582757 SAMN22312884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530980/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.705 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.764 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582758 SAMN22312882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531042/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.934 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.313 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.895 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582759 SAMN22312883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531037/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.645 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.61 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.084 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.579 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582760 SAMN22312881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531093/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.616 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.171 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.217 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582761 SAMN22312880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531172/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.863 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.981 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.979 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582762 SAMN22312879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531236/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.989 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.849 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.06 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.714 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582763 SAMN22312878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531266/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.053 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.773 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.26 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.169 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582764 SAMN22312877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531308/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.025 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.669 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.101 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.87 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582765 SAMN22313399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10531605/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.065 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.973 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.923 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.691 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582766 SAMN22313120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10531426/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 32.587 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.728 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 33.257 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.202 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582767 SAMN22312876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531314/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.201 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.773 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.409 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.846 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582768 SAMN22313612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10490396/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.461 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.16 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.01 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582769 SAMN22313119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10531641/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.836 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.278 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.686 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582770 SAMN22312875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10531750/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.418 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.594 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.513 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582771 SAMN22313611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10490592/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.862 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.45 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.559 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582772 SAMN22313610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10490639/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.076 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.288 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.032 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.794 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582773 SAMN22313609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10491412/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.959 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.684 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.288 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.506 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582774 SAMN22312961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10491459/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.055 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.361 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.136 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.53 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582775 SAMN22312960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10491757/2021 collected_by Mako Medical collection_date 2021-09-21 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 96 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.209 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.803 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582776 SAMN22313607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10491739/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.001 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.917 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.395 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.707 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582777 SAMN22312982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10491971/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.417 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.488 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.554 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.282 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582778 SAMN22313608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10491463/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.129 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.409 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.172 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582779 SAMN22312980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10491986/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.401 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.827 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.095 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582780 SAMN22312981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10491972/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.48 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.947 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.744 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.032 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582781 SAMN22312979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10492001/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.056 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.617 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582782 SAMN22312978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10492025/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.517 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.752 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.654 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.392 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582783 SAMN22312959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10492118/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.151 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.555 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.313 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582784 SAMN22313305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10492538/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.894 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.664 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.214 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.998 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582785 SAMN22313606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10492617/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.254 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.147 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.111 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582786 SAMN22313002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10492699/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.662 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.774 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.016 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.821 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582787 SAMN22313304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10492745/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.133 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.276 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.912 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582788 SAMN22313605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10492804/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.114 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.981 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.559 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582789 SAMN22313303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10493156/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.972 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.681 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.39 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582790 SAMN22313302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10493527/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.133 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.226 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.845 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582791 SAMN22312833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10492883/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.021 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.565 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.66 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582792 SAMN22313604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10493825/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.855 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.234 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.981 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582793 SAMN22312958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493528/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.634 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.674 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.547 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582794 SAMN22313301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10493967/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.724 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.125 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.553 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582795 SAMN22312832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10494100/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.008 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.31 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582796 SAMN22312957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493991/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.809 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.784 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.87 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582797 SAMN22312977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10494243/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.866 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.262 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582798 SAMN22313603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10494206/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.663 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.978 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.865 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.93 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582799 SAMN22312976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10494248/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.451 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.585 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.834 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582800 SAMN22312975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10494255/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.886 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.414 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.807 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582801 SAMN22312974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/ND-CDC-MMB10494257/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: North Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.578 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 32.437 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.783 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.217 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582802 SAMN22312894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10515527/2021 collected_by Mako Medical collection_date 2021-09-16 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.303 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.607 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.97 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582803 SAMN22312930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10515497/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.069 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.23 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.595 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.634 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582804 SAMN22312825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10515511/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.968 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.309 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.131 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582805 SAMN22313198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515534/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.822 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.773 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.182 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.799 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582806 SAMN22313066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10515654/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.256 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.105 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.163 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.032 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582807 SAMN22313197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515705/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.917 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.638 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.683 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.87 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582808 SAMN22313533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10515731/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.686 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.545 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.719 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.763 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582809 SAMN22313065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10515792/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race N collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.278 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.043 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.56 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.973 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582810 SAMN22313196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515808/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.956 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.829 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.319 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582811 SAMN22313195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515881/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.977 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.222 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.165 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.049 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582812 SAMN22313193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515929/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.717 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.561 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.027 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.053 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10582813 SAMN22313194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515902/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.394 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.988 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.25 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.003 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated