SRS10601794 SAMN22350225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317480/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.499 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601795 SAMN22350673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317482/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601796 SAMN22350224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317485/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.587 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.942 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601797 SAMN22350223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317486/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.306 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601798 SAMN22350672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317488/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601799 SAMN22350671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317491/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.292 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601800 SAMN22350222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317492/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.650 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601801 SAMN22349993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317490/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.983 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601802 SAMN22350220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317494/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601803 SAMN22350221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317493/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601804 SAMN22350602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317495/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.750 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601805 SAMN22350601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317496/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.230 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601806 SAMN22350525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317499/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601807 SAMN22349931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317502/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.448 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601808 SAMN22349930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317503/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601809 SAMN22350524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317504/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.242 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601810 SAMN22349928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317506/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601811 SAMN22350523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317507/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.28 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601812 SAMN22349929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317505/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601813 SAMN22350274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317508/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.374 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601814 SAMN22350272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317510/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.687 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601815 SAMN22350273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317509/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601816 SAMN22350270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317512/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601817 SAMN22350271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317511/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601818 SAMN22350522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317513/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.536 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601819 SAMN22349927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317514/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601820 SAMN22349926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317515/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.430 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601821 SAMN22349925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317516/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.914 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601822 SAMN22350521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317520/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601823 SAMN22349924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317522/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.195 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601824 SAMN22349923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317523/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601825 SAMN22350451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317878/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.898 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601826 SAMN22349922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317524/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601827 SAMN22350450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317879/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.003 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601828 SAMN22350393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317881/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.092 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601829 SAMN22350392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317882/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.097 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601830 SAMN22350449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317883/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.412 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.919 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601831 SAMN22350164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317884/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601832 SAMN22350056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317890/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601833 SAMN22350391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317888/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601834 SAMN22349889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317892/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.361 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601835 SAMN22349888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317893/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.870 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601836 SAMN22349887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317895/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601837 SAMN22350163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317899/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.362 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601838 SAMN22350162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317906/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601839 SAMN22350161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317907/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.165 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601840 SAMN22350160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317908/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601841 SAMN22350409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0317909/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.753 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601842 SAMN22350055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317910/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.837 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601843 SAMN22349886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317912/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601844 SAMN22349885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317913/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.143 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601845 SAMN22349884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317914/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.239 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601846 SAMN22350408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0317915/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601847 SAMN22350158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317917/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.038 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.312 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601848 SAMN22350159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317916/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.763 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601849 SAMN22350157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317919/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601850 SAMN22350156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317920/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601851 SAMN22350448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317921/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.380 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601852 SAMN22350447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317922/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601853 SAMN22350155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317925/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.862 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601854 SAMN22350054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317927/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.257 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601855 SAMN22349882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317929/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601856 SAMN22349883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317928/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.337 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601857 SAMN22350154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317932/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.410 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601858 SAMN22350724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316896/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601859 SAMN22350723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316898/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601860 SAMN22350722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316902/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.055 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601861 SAMN22350012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0316903/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601862 SAMN22350568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316904/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.610 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601863 SAMN22350567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316907/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601864 SAMN22350300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316908/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.897 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601865 SAMN22350299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316911/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601866 SAMN22350298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316912/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601867 SAMN22350496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0316913/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.032 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601868 SAMN22349964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316914/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.139 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601869 SAMN22350721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316915/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.079 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601870 SAMN22350297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316917/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.206 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601871 SAMN22350258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316921/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.791 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601872 SAMN22350566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316922/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601873 SAMN22350565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316923/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.610 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601874 SAMN22350362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0316927/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.979 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601875 SAMN22350563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316929/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.467 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601876 SAMN22350564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316928/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.088 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.790 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601877 SAMN22349963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316931/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.231 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601878 SAMN22349962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316932/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.266 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601879 SAMN22349961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316933/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601880 SAMN22349959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316935/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601881 SAMN22349960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316934/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.764 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601882 SAMN22350296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316940/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601883 SAMN22350294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316943/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.395 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601884 SAMN22350295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316941/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.395 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601885 SAMN22349958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316945/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.045 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601886 SAMN22349957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316946/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601887 SAMN22350562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316950/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.069 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601888 SAMN22349956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316952/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601889 SAMN22349955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316953/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.995 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601890 SAMN22350219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317526/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.622 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601891 SAMN22350218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317527/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.210 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601893 SAMN22350216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317529/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601894 SAMN22350520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317530/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.477 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601895 SAMN22350600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317531/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601896 SAMN22350215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317533/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601897 SAMN22350599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317532/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.900 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601898 SAMN22350519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317535/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.597 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601899 SAMN22350518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317536/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601900 SAMN22350214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317540/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.172 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.886 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601901 SAMN22349921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317543/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.725 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.732 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601892 SAMN22350217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317528/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.625 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601902 SAMN22349920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317544/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601903 SAMN22350492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317548/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601904 SAMN22349919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317549/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.745 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.163 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601905 SAMN22349918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317550/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601906 SAMN22349917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317551/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.804 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601907 SAMN22350517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317553/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601908 SAMN22349916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317552/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.318 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601909 SAMN22350370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317554/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601910 SAMN22350369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317555/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.880 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601911 SAMN22350640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317556/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601912 SAMN22350639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317557/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.768 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601913 SAMN22350638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317558/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601914 SAMN22350637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317559/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601915 SAMN22350368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317560/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.147 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601916 SAMN22350636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317561/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601917 SAMN22350635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317562/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601918 SAMN22350634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317563/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.222 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601919 SAMN22350633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317564/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601920 SAMN22350632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317565/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.397 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601921 SAMN22350327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317566/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.427 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.140 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601922 SAMN22350326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317567/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601923 SAMN22349915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317568/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.105 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601924 SAMN22350669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317570/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.804 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601925 SAMN22350670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317569/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.967 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601926 SAMN22350269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317572/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601927 SAMN22350631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317575/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.505 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.661 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601928 SAMN22350630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317576/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601929 SAMN22350629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317577/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601930 SAMN22350628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317579/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.062 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601931 SAMN22350213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317584/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601932 SAMN22350367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317580/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.217 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601933 SAMN22350212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317585/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.319 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.581 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601934 SAMN22350211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317586/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.268 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601935 SAMN22350668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317587/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.010 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601936 SAMN22350598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317588/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601937 SAMN22350311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0317590/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.994 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601938 SAMN22350667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317593/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.273 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601939 SAMN22350268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317592/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.991 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601940 SAMN22350666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317594/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601941 SAMN22350665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317595/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601942 SAMN22350210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317596/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.343 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.677 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601943 SAMN22350366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317597/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.198 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601944 SAMN22349843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0317598/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.181 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601945 SAMN22349914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317601/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.171 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601946 SAMN22350664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317599/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601947 SAMN22349913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317603/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601948 SAMN22350516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317606/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.712 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601949 SAMN22349912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317607/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.67 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.990 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601950 SAMN22350515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317608/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.393 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601951 SAMN22350663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317611/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601952 SAMN22349992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317620/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.536 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.076 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601953 SAMN22349991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317625/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601954 SAMN22349954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316954/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601955 SAMN22350011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0316955/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601956 SAMN22350010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0316956/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.829 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.768 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601957 SAMN22350378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0316958/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.401 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601958 SAMN22350649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316960/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.696 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601959 SAMN22350648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316961/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601960 SAMN22350647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316962/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.550 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601961 SAMN22350377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0316964/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.625 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601962 SAMN22350257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316967/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601963 SAMN22350256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316968/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601964 SAMN22350255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316969/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.636 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601965 SAMN22350254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316978/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.606 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.126 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601966 SAMN22350252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316980/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.774 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601967 SAMN22350561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316985/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601968 SAMN22350560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316986/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601969 SAMN22350559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316987/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.128 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601970 SAMN22350558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316989/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.486 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601971 SAMN22350646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316991/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.380 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601972 SAMN22350293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316999/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.210 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601973 SAMN22350292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317000/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.372 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601974 SAMN22350614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317005/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.632 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.014 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601975 SAMN22350251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317007/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.990 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601976 SAMN22350250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317009/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.233 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601977 SAMN22350361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317011/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601978 SAMN22349953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317012/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.353 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601979 SAMN22350291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317026/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601980 SAMN22350744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0317018/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.812 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601981 SAMN22350290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317027/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601982 SAMN22350289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317029/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601983 SAMN22350288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317030/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.058 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601984 SAMN22350249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317031/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.264 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.418 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601985 SAMN22350376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317032/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.255 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601986 SAMN22350645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317033/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.320 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601987 SAMN22350375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317034/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601988 SAMN22350720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317036/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.796 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601989 SAMN22350719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317038/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601990 SAMN22350248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317042/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.457 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601991 SAMN22350287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317046/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.608 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.550 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601992 SAMN22350286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317048/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.694 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601993 SAMN22350718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317049/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.413 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.016 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601994 SAMN22350285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317050/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.600 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601995 SAMN22350247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317051/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.882 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601996 SAMN22350284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317052/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.646 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601997 SAMN22350283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317053/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.729 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601998 SAMN22350282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317055/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.489 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10601999 SAMN22350717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317056/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.193 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602000 SAMN22350716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317057/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.180 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602001 SAMN22350715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317058/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.312 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602002 SAMN22350246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317059/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602003 SAMN22350374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317060/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602004 SAMN22350644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317061/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602005 SAMN22350557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317064/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.805 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602006 SAMN22350281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317065/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.357 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602007 SAMN22350714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317066/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.244 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602008 SAMN22350475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0317069/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602009 SAMN22350312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0317071/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602010 SAMN22350613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317072/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.978 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602011 SAMN22350612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317073/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602012 SAMN22350611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317074/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.467 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602013 SAMN22350556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317077/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602014 SAMN22350610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317079/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.641 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602015 SAMN22350609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317080/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602016 SAMN22350555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317081/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.646 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602017 SAMN22350390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317935/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.532 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602018 SAMN22350153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317936/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.024 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602019 SAMN22350053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317937/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602020 SAMN22349881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317938/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.440 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602021 SAMN22350052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317939/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.501 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602022 SAMN22350152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317941/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.132 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.980 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602023 SAMN22350151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317942/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602024 SAMN22350446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317943/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.839 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602025 SAMN22350445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317944/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602026 SAMN22350444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317946/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.147 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602027 SAMN22350443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317947/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602028 SAMN22350389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317948/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.280 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602029 SAMN22350484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317949/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602030 SAMN22350150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317950/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602031 SAMN22350149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317952/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602032 SAMN22350442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317953/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602033 SAMN22350051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317955/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602034 SAMN22350441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317959/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.279 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602035 SAMN22350483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317960/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.822 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602036 SAMN22349880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317962/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.000 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602037 SAMN22350440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317963/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.522 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602038 SAMN22350147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317966/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.855 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602039 SAMN22350148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317965/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.689 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602040 SAMN22350146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317967/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.799 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602041 SAMN22350145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317969/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.568 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602042 SAMN22350439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317971/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.105 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602043 SAMN22350438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317972/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.76 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.845 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602044 SAMN22350144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317974/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602045 SAMN22350143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317975/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.660 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602046 SAMN22350142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317979/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602047 SAMN22350504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317983/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.584 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602048 SAMN22350503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317984/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602049 SAMN22349952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317082/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.327 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602050 SAMN22349951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317084/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602051 SAMN22350360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317085/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.363 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602052 SAMN22350554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317086/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.139 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.200 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602053 SAMN22350033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317088/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.995 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.049 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602054 SAMN22350245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317089/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.147 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602055 SAMN22350660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317092/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.701 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.562 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602056 SAMN22350713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317093/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.089 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602057 SAMN22350712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317096/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.319 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602058 SAMN22350711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317098/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.970 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602059 SAMN22350710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317099/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602060 SAMN22350709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317100/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.478 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602061 SAMN22350359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317102/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.283 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602062 SAMN22350358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317103/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.49 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.782 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602063 SAMN22350357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317104/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.779 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602064 SAMN22350356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317105/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.564 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602065 SAMN22350553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317106/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.823 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602066 SAMN22350355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317108/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.070 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602067 SAMN22350032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317110/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602068 SAMN22350031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317111/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.860 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602069 SAMN22350474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0317116/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602070 SAMN22350708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317122/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.453 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602071 SAMN22350707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317123/2021 collected_by Laboratory Corporation of America collection_date 2021-09-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.630 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602072 SAMN22350706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317126/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602073 SAMN22350705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317127/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.571 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602074 SAMN22350354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317128/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602075 SAMN22350353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317129/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.278 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602076 SAMN22350352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317130/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.022 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602077 SAMN22350351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317131/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.945 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602078 SAMN22350350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317132/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.179 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602079 SAMN22350552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317133/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.17 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602080 SAMN22350704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317134/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.724 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602081 SAMN22350502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317985/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602082 SAMN22350388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317986/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.828 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602083 SAMN22350141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317987/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602084 SAMN22350501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317988/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602085 SAMN22349879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317989/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.687 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602086 SAMN22350050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317993/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602087 SAMN22350049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317994/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.595 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602088 SAMN22349878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317995/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602089 SAMN22349877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317996/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.193 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602090 SAMN22349876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318000/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.278 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602091 SAMN22349875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318001/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.265 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.783 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602092 SAMN22349874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318002/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.646 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602093 SAMN22349873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318003/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.777 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602094 SAMN22349872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318004/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.477 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602095 SAMN22349871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318005/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.675 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602096 SAMN22349870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318007/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602097 SAMN22350034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0318010/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.218 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.200 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602098 SAMN22350437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318011/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.255 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602099 SAMN22350436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318012/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.475 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.409 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602100 SAMN22349869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318016/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.340 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602101 SAMN22350435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318013/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.352 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602102 SAMN22350048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318026/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602103 SAMN22350047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318027/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602104 SAMN22349868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318029/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.183 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602105 SAMN22350140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318032/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.719 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602106 SAMN22350139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318033/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.196 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602107 SAMN22350138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318034/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602108 SAMN22350137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318035/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.909 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602109 SAMN22350136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318036/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.879 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602110 SAMN22350434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318040/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.374 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.755 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602111 SAMN22349867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318041/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.208 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602112 SAMN22349866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318042/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.409 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.852 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602113 SAMN22350267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317628/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.686 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.064 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602114 SAMN22350266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317629/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.628 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.412 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602115 SAMN22350471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0317632/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.522 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602116 SAMN22350662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317634/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602117 SAMN22350586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317635/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.958 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602118 SAMN22350658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317639/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602119 SAMN22350656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317645/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.402 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.005 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602120 SAMN22350657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317640/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.185 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602121 SAMN22350655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317646/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.315 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602122 SAMN22350654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317647/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.426 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602123 SAMN22350653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317649/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.504 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.197 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602124 SAMN22349989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317650/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.761 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.415 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602125 SAMN22350325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317653/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602126 SAMN22350514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317654/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602127 SAMN22350513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317655/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602128 SAMN22349988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317656/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602129 SAMN22349987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317657/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602130 SAMN22350324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317658/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.881 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602131 SAMN22349986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317660/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602132 SAMN22350068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0317659/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.853 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602133 SAMN22349985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317664/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.844 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602134 SAMN22349984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317665/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.832 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602135 SAMN22350323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317666/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602136 SAMN22349911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317667/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.834 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602137 SAMN22349910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317668/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.732 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602138 SAMN22350512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317671/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602139 SAMN22350511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317672/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.960 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602140 SAMN22349909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317673/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602141 SAMN22349907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317675/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.799 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602142 SAMN22349908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317674/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602143 SAMN22350703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317137/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602144 SAMN22350244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317138/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602145 SAMN22350243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317139/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.608 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602146 SAMN22350242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317140/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602147 SAMN22350473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0317143/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.090 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602148 SAMN22350030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317144/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.589 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602149 SAMN22350029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317145/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.63 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602150 SAMN22350028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317146/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.243 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602151 SAMN22350027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317147/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602152 SAMN22350026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317148/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.614 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602153 SAMN22350025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317151/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602154 SAMN22350591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317152/2021 collected_by Laboratory Corporation of America collection_date 2021-10-03 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.651 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602155 SAMN22350590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317153/2021 collected_by Laboratory Corporation of America collection_date 2021-10-03 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602156 SAMN22350589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317155/2021 collected_by Laboratory Corporation of America collection_date 2021-10-02 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602157 SAMN22350588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317156/2021 collected_by Laboratory Corporation of America collection_date 2021-10-02 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.647 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602158 SAMN22350587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317157/2021 collected_by Laboratory Corporation of America collection_date 2021-10-02 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.057 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.158 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602159 SAMN22350702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317159/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.097 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602160 SAMN22350280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317162/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.402 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602161 SAMN22350279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317163/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.918 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.044 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602162 SAMN22349950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317169/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.891 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602163 SAMN22350701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317168/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.489 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602164 SAMN22349949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317174/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602165 SAMN22350373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317175/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.744 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602166 SAMN22350700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317177/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.889 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602167 SAMN22350699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317178/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.348 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.550 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602168 SAMN22350698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317179/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602169 SAMN22350697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317182/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.584 lineage/clade name AY.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602170 SAMN22350551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317185/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.566 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602171 SAMN22350550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317186/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602172 SAMN22350549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317188/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.379 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.195 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602173 SAMN22350548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317193/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602174 SAMN22350349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317194/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602175 SAMN22350508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317681/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602176 SAMN22349906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317682/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.899 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602177 SAMN22349983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317683/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602178 SAMN22350321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317686/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602179 SAMN22350320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317687/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602180 SAMN22350322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317684/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602181 SAMN22350319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317688/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.525 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602182 SAMN22350585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317689/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.836 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602183 SAMN22350584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317690/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602184 SAMN22350583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317691/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602185 SAMN22350582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317692/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.043 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602186 SAMN22350581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317693/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602187 SAMN22350580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317694/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.779 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602188 SAMN22350579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317696/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.413 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602189 SAMN22349982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317698/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602190 SAMN22350578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317699/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602191 SAMN22349980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317707/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602192 SAMN22349981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317702/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602193 SAMN22350576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317708/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602194 SAMN22350318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317709/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.098 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602195 SAMN22350317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317711/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.439 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602196 SAMN22350316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317712/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.863 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602197 SAMN22350575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317713/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602198 SAMN22350574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317714/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.581 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602199 SAMN22350573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317715/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.385 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602200 SAMN22350571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317717/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602201 SAMN22350572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317716/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602202 SAMN22350315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317721/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.936 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602203 SAMN22350066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0317720/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.241 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602204 SAMN22350314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317722/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602205 SAMN22350696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317196/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.439 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.561 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602206 SAMN22350241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317198/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.741 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.252 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602207 SAMN22350240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317201/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.565 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.037 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602208 SAMN22350239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317203/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602209 SAMN22350695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317207/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.578 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.126 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602210 SAMN22350238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317204/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602211 SAMN22350694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317208/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.118 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.720 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602212 SAMN22350024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317209/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602213 SAMN22350237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317211/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.636 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602214 SAMN22350236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317212/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.846 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602215 SAMN22349948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317216/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.49 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.947 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602216 SAMN22350235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317214/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602217 SAMN22350547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317217/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602218 SAMN22350626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0317219/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.201 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602219 SAMN22350608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317220/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.720 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602220 SAMN22350234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317223/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.6 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.983 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602221 SAMN22350233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317225/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.314 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602222 SAMN22350546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317227/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.671 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.238 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602223 SAMN22349947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317226/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.222 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602224 SAMN22350544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317231/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602225 SAMN22350545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317228/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602226 SAMN22350543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317232/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602227 SAMN22350542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317233/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602228 SAMN22350232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317235/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.285 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602229 SAMN22350693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317238/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.146 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602230 SAMN22349946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317239/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.846 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602231 SAMN22349945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317240/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602232 SAMN22350348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317245/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.761 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602233 SAMN22350347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317246/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.353 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602234 SAMN22349944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317247/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602235 SAMN22349943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317248/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602236 SAMN22350541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317249/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.189 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602237 SAMN22350313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0317724/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602238 SAMN22349905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317725/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.84 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602239 SAMN22349904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317726/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.054 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602240 SAMN22349903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317728/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.83 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.021 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602241 SAMN22349902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317732/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602242 SAMN22350507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317733/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.409 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602243 SAMN22350467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317736/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602244 SAMN22349898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317738/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.102 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602245 SAMN22349897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317739/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.853 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602246 SAMN22349896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317740/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.164 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602247 SAMN22349895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317741/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.495 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602248 SAMN22350466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317747/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.045 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.911 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602249 SAMN22349894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317742/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602250 SAMN22350200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317748/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602251 SAMN22350199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317749/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.081 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602252 SAMN22350198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317750/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.461 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602253 SAMN22350404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317751/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602254 SAMN22350403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317753/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.927 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602255 SAMN22350491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317757/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.944 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602256 SAMN22350465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317754/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.300 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602257 SAMN22350402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317760/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.113 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.331 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602258 SAMN22350401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317761/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.096 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602259 SAMN22350400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317762/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.527 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602260 SAMN22349893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317763/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.614 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602261 SAMN22350490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317766/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.032 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602262 SAMN22350399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317767/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.107 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602263 SAMN22350398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317768/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602264 SAMN22350464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317769/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.216 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602265 SAMN22350197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317770/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602266 SAMN22350195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317772/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602267 SAMN22350196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317771/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.910 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602268 SAMN22350194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317774/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602269 SAMN22350476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0316679/2021 collected_by Laboratory Corporation of America collection_date 2021-09-17 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602270 SAMN22350625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316682/2021 collected_by Laboratory Corporation of America collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602271 SAMN22350753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316688/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602272 SAMN22350752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316689/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602273 SAMN22349865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318043/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.026 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602274 SAMN22349864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318045/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.762 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602275 SAMN22350433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318046/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602276 SAMN22349863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318049/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.147 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.485 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602277 SAMN22349862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318051/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.446 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602278 SAMN22349861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318052/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.471 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.035 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602279 SAMN22350135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318055/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.530 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602280 SAMN22349860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318056/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602281 SAMN22349859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318057/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.949 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602282 SAMN22349858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318058/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602283 SAMN22349857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318059/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.514 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602284 SAMN22350134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318060/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602285 SAMN22350133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318061/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.932 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602286 SAMN22350431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318065/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602287 SAMN22350432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318064/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.126 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602288 SAMN22350430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318066/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.182 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602289 SAMN22350428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318068/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.32 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.618 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602290 SAMN22350429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318067/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.369 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602291 SAMN22350427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318071/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602292 SAMN22350482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0318072/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.542 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.509 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602293 SAMN22350046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318073/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602294 SAMN22350045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318076/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.463 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602295 SAMN22350044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318080/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.227 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602296 SAMN22349856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318084/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.470 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602297 SAMN22350426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318085/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.363 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.380 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602298 SAMN22350043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318089/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.125 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.503 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602299 SAMN22350042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318090/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.177 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.123 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602300 SAMN22350041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318091/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.562 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602301 SAMN22350425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318092/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.595 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.243 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602302 SAMN22350424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318094/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.441 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.283 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602303 SAMN22350132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318095/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.473 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602304 SAMN22350131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318097/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602305 SAMN22350193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317777/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.700 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602306 SAMN22350065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317782/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.969 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602307 SAMN22350192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317783/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602308 SAMN22350191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317784/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.181 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602309 SAMN22350190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317785/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602310 SAMN22350189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317786/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602311 SAMN22350188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317790/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602312 SAMN22350187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317792/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.921 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602313 SAMN22350489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317795/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.109 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.040 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602314 SAMN22350506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317796/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.906 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602315 SAMN22350186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317799/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602316 SAMN22350185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317800/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.375 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602317 SAMN22350184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317801/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602318 SAMN22350183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317802/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.011 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602319 SAMN22350182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317803/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.101 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602320 SAMN22350181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317804/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602321 SAMN22350505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317806/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.435 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602322 SAMN22350488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317807/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.023 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602323 SAMN22350180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317808/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602324 SAMN22350179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317809/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.647 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602325 SAMN22350178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317810/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.919 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602326 SAMN22350177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317812/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.626 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.154 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602327 SAMN22350064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317816/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.02 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602328 SAMN22350063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317817/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.062 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602329 SAMN22350062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317820/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602330 SAMN22350463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317824/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.690 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602331 SAMN22350462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317825/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602332 SAMN22350461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317826/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.848 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602333 SAMN22350397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317831/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602334 SAMN22350460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317827/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.603 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602335 SAMN22350061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317832/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602336 SAMN22350060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317833/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.321 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602337 SAMN22350100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316690/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602338 SAMN22350099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316691/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602339 SAMN22350098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316696/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602340 SAMN22350096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316699/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602341 SAMN22350097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316698/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602342 SAMN22350095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316703/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602343 SAMN22350094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316704/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602344 SAMN22350093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316705/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602345 SAMN22350092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316706/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602346 SAMN22350091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316707/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602347 SAMN22350597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0316711/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602348 SAMN22350340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316712/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602349 SAMN22350338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316714/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602350 SAMN22350339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316713/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602351 SAMN22350337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316715/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602352 SAMN22350336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316719/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602353 SAMN22350751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316720/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602354 SAMN22350750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316722/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602355 SAMN22350749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316723/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602356 SAMN22350748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316726/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602357 SAMN22350090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316727/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602358 SAMN22350089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316728/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602359 SAMN22350088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316729/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602360 SAMN22350087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316730/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602361 SAMN22350086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316731/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602362 SAMN22350747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316732/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602363 SAMN22350746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316733/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602364 SAMN22350085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316734/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602365 SAMN22350084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316736/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602366 SAMN22350083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316739/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602367 SAMN22350082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316741/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602368 SAMN22350081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316742/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602369 SAMN22349942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317251/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.164 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602370 SAMN22349941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317252/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.253 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602371 SAMN22350346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317253/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.491 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602372 SAMN22350740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0317255/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.477 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602373 SAMN22349940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317257/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.620 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602374 SAMN22350231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317264/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.563 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602375 SAMN22350230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317265/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602376 SAMN22350692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317268/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602377 SAMN22350691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317269/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.175 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602378 SAMN22350372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317279/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.018 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602379 SAMN22349939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317280/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602380 SAMN22349938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317281/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.359 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602381 SAMN22349937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317282/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.717 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602382 SAMN22350540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317284/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.401 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.821 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602383 SAMN22349936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317285/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.150 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602384 SAMN22350278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317286/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602385 SAMN22350690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317287/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.249 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602386 SAMN22350689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317288/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.839 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.190 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602387 SAMN22350688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317289/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602388 SAMN22350277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317290/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602389 SAMN22350276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317291/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.709 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602390 SAMN22350275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0317292/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602391 SAMN22350023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317294/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.038 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602392 SAMN22350607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317295/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602393 SAMN22350606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317296/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.157 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602394 SAMN22350605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317297/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.550 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602395 SAMN22350643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317304/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.400 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602396 SAMN22350539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317302/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602397 SAMN22350495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317300/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602398 SAMN22350009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317306/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.291 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602399 SAMN22350008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317308/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.510 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602400 SAMN22350007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317310/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602401 SAMN22350006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317311/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.723 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602402 SAMN22350642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317312/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.661 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602403 SAMN22350739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0317315/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602404 SAMN22350229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317316/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602405 SAMN22350604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317319/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602406 SAMN22350228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317320/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.750 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602407 SAMN22350687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317322/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602408 SAMN22350005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317323/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602409 SAMN22350004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317324/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.110 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602410 SAMN22350022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317327/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.043 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.688 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602411 SAMN22350021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317328/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.293 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602412 SAMN22350020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317329/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.440 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602413 SAMN22350603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0317332/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602414 SAMN22350345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317335/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.906 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602415 SAMN22349935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317334/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.361 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602416 SAMN22350344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317336/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.828 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602417 SAMN22350101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0317338/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.440 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602418 SAMN22350019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317340/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.930 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602419 SAMN22350472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0317341/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602420 SAMN22350003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317351/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602421 SAMN22350686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317349/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602422 SAMN22350641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0317354/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602423 SAMN22350538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317360/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.653 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602424 SAMN22350537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317361/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.756 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602425 SAMN22350685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317362/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.313 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602426 SAMN22350684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317365/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602427 SAMN22350535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317368/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.280 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602428 SAMN22350536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317367/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.053 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602429 SAMN22350534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317369/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.560 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602430 SAMN22350683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317374/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602431 SAMN22350533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317373/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.514 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602432 SAMN22350682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317375/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.157 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602433 SAMN22349892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317837/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602434 SAMN22350059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317834/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.488 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602435 SAMN22350058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317838/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.212 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602436 SAMN22349891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317840/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602437 SAMN22350176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317842/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602438 SAMN22350175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317843/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.753 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602439 SAMN22350174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317844/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602440 SAMN22350173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317845/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.110 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602441 SAMN22350172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317846/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.718 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602442 SAMN22350170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317848/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.885 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602443 SAMN22350171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317847/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602444 SAMN22350487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317852/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.230 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602445 SAMN22350396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317853/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602446 SAMN22350459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317854/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602447 SAMN22350486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317859/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.941 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602448 SAMN22350168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317860/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.822 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602449 SAMN22350167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317861/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.743 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602450 SAMN22350457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317862/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.994 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602451 SAMN22350456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317863/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602452 SAMN22350455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317864/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.362 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602453 SAMN22350485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317865/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.676 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602454 SAMN22349890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317866/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.203 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602455 SAMN22350454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317870/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.664 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602456 SAMN22350394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317868/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.877 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602457 SAMN22350453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317872/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.333 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602458 SAMN22350057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0317871/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.619 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602459 SAMN22350452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317874/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602460 SAMN22350166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317875/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.204 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602461 SAMN22350165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317876/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.579 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602462 SAMN22350130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318098/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.703 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602463 SAMN22350040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318099/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602464 SAMN22349855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318101/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602465 SAMN22349854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318102/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602466 SAMN22349853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318103/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602467 SAMN22349852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318104/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.155 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602468 SAMN22349851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318106/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.146 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602469 SAMN22350407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0318109/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.822 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602470 SAMN22350128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318113/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602471 SAMN22350129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318112/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602472 SAMN22350127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318114/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.369 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602473 SAMN22350126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318115/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.474 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602474 SAMN22350125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318116/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.144 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602475 SAMN22350124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318117/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.782 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602476 SAMN22350123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318119/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602477 SAMN22350039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318120/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602478 SAMN22350500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0318121/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602479 SAMN22349850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318122/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602480 SAMN22350387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0318123/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602481 SAMN22350386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0318124/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.940 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602482 SAMN22350385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0318126/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.480 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602483 SAMN22350423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318128/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.053 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.066 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602484 SAMN22350422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318129/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.810 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602485 SAMN22350421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318130/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.246 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.778 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602486 SAMN22350122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318131/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.548 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.020 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602487 SAMN22350121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318132/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.6 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.320 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602488 SAMN22350120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318133/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.606 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602489 SAMN22350420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318134/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.531 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602490 SAMN22350119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318135/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602491 SAMN22350118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318137/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602492 SAMN22350117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318138/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.694 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602493 SAMN22350116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318139/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.011 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.450 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602494 SAMN22350080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316743/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602495 SAMN22350079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316744/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602496 SAMN22350078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316745/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602498 SAMN22350076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316747/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602499 SAMN22350075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316750/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602500 SAMN22350074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316751/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602501 SAMN22350073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316755/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602502 SAMN22350072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316757/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602503 SAMN22350596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0316758/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602504 SAMN22350595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0316759/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602505 SAMN22350594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0316760/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602506 SAMN22350593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0316761/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602507 SAMN22350335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316765/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602508 SAMN22350334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316767/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602509 SAMN22350738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316775/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602497 SAMN22350077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316746/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602510 SAMN22350745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0316770/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602511 SAMN22350592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0316776/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.620 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602512 SAMN22350265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316779/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602513 SAMN22350310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316778/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602514 SAMN22350737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316780/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602515 SAMN22350736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316781/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.755 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.621 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602516 SAMN22350735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316782/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.526 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602517 SAMN22350309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316783/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.196 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602518 SAMN22350734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316785/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.542 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602519 SAMN22350733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316786/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602520 SAMN22350661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0316787/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602521 SAMN22350308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316788/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.263 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602522 SAMN22350307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316789/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.498 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602523 SAMN22350071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0316790/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.626 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602524 SAMN22350732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316791/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.382 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602525 SAMN22349979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316792/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.068 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.220 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602526 SAMN22350227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317376/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.350 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602527 SAMN22350226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0317378/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.257 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602528 SAMN22350681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317382/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.555 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602529 SAMN22350680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317383/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.410 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602530 SAMN22350679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317384/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.851 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602531 SAMN22350678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317386/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602532 SAMN22350677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317387/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602533 SAMN22350676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317388/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602534 SAMN22350018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317392/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.088 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602535 SAMN22350017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317393/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.471 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602536 SAMN22350015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317395/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602537 SAMN22350016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317394/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.253 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602538 SAMN22350532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317396/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.108 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.363 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602539 SAMN22350531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317397/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.334 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602540 SAMN22350343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317398/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.246 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602541 SAMN22350530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317400/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602542 SAMN22350529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317401/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.597 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602543 SAMN22350528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317402/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602544 SAMN22350342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317404/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602545 SAMN22350341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0317405/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.829 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602546 SAMN22350659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0317406/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602547 SAMN22350743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0317407/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.062 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602548 SAMN22350742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0317408/2021 collected_by Laboratory Corporation of America collection_date 2021-10-01 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602549 SAMN22350070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0317410/2021 collected_by Laboratory Corporation of America collection_date 2021-10-02 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.801 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602550 SAMN22350209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0317409/2021 collected_by Laboratory Corporation of America collection_date 2021-10-03 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602551 SAMN22350069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0317411/2021 collected_by Laboratory Corporation of America collection_date 2021-10-02 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.323 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602552 SAMN22349990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0317412/2021 collected_by Laboratory Corporation of America collection_date 2021-10-02 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.678 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602553 SAMN22350208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317416/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602554 SAMN22350494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317413/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.524 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602555 SAMN22349901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317419/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.486 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602556 SAMN22350405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317420/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.044 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602557 SAMN22349900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317423/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.977 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602558 SAMN22350113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318142/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.952 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602559 SAMN22350115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318140/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602560 SAMN22350114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318141/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.865 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.918 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602561 SAMN22350111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318148/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602562 SAMN22350419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318145/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.381 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602563 SAMN22350112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318147/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.937 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602564 SAMN22350110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318149/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.944 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602565 SAMN22350109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318152/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.010 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602566 SAMN22350108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318153/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.439 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.987 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602567 SAMN22349849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318156/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.760 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602568 SAMN22350481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0318154/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.540 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602569 SAMN22349848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318157/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.084 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602570 SAMN22350406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0318161/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602571 SAMN22349847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318158/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.078 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602572 SAMN22350418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318163/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.445 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602573 SAMN22350384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0318165/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602574 SAMN22350417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318167/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.304 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602575 SAMN22350416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318168/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602576 SAMN22350480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0318169/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602577 SAMN22350479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0318170/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602578 SAMN22350478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0318171/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602579 SAMN22350477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0318172/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.851 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602580 SAMN22349846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318175/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.577 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602581 SAMN22350107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318177/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.043 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602582 SAMN22350106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318178/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.829 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602583 SAMN22350105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318179/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.586 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602584 SAMN22350104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318180/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.501 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602585 SAMN22350499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0318183/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.882 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.160 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602586 SAMN22350498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0318184/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.376 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602587 SAMN22350038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318186/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602588 SAMN22350036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318189/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.881 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602589 SAMN22349978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316793/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602590 SAMN22350037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318188/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.431 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602591 SAMN22349977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316794/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.811 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.977 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602592 SAMN22350497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0316795/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602593 SAMN22350570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316796/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.038 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602594 SAMN22349976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316797/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602595 SAMN22349974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316799/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.535 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602596 SAMN22349975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316798/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.651 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602597 SAMN22349973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316800/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.419 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602598 SAMN22349972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316801/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602599 SAMN22349971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316802/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.925 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602600 SAMN22350569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0316803/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.138 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602601 SAMN22350382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0316804/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602602 SAMN22350652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316806/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602603 SAMN22349970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316807/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.950 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602604 SAMN22350333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316808/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.793 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.271 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.284 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602605 SAMN22350332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316809/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.370 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602606 SAMN22350331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316810/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.819 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602607 SAMN22350381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0316811/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.724 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602608 SAMN22350306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316818/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602609 SAMN22350305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316819/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602610 SAMN22350380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0316816/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.029 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602611 SAMN22350624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316822/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602612 SAMN22350623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316825/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.698 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602613 SAMN22350627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0316826/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602614 SAMN22350622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316827/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602615 SAMN22350650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316831/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.640 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602616 SAMN22350651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0316828/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.741 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602617 SAMN22350330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316832/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.530 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602618 SAMN22350328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316834/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602619 SAMN22350329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MT-CDC-LC0316833/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.355 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.330 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602620 SAMN22350379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0316835/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602621 SAMN22350621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316837/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.505 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602622 SAMN22349899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0317428/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.563 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.071 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.983 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602623 SAMN22350470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317429/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.715 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602624 SAMN22350207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317433/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.056 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.776 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602625 SAMN22350206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317434/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.06 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.622 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602626 SAMN22350468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317435/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.829 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.077 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602627 SAMN22350205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317436/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602628 SAMN22350204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317440/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.851 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602629 SAMN22350203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317442/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602630 SAMN22350202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317443/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.152 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602631 SAMN22350201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317444/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.248 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602632 SAMN22350410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0317445/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602633 SAMN22350371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0317447/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.392 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602634 SAMN22350675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317448/2021 collected_by Laboratory Corporation of America collection_date 2021-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602635 SAMN22350013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317450/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.231 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602636 SAMN22350014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0317449/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.254 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.489 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602637 SAMN22350002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317452/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.899 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602638 SAMN22350001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317453/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.466 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602639 SAMN22350000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317454/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602640 SAMN22349999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317455/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.654 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602641 SAMN22349997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317457/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.402 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602642 SAMN22349998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317456/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602643 SAMN22349996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317458/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602644 SAMN22350527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317464/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.053 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.250 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602645 SAMN22349934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317462/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602646 SAMN22350493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0317466/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602647 SAMN22349933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317467/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.098 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.461 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602648 SAMN22349932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0317468/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.061 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602649 SAMN22350526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317470/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.936 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602650 SAMN22349994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317474/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.467 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602651 SAMN22350674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0317476/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.188 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602652 SAMN22350035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0318190/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602653 SAMN22349845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318191/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.455 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602654 SAMN22350415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318194/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602655 SAMN22350414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318195/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602656 SAMN22350413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318196/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602657 SAMN22350103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318197/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602658 SAMN22349844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0318202/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.343 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602659 SAMN22350412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318198/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.783 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602660 SAMN22350411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0318199/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.752 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602661 SAMN22350383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0318203/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.571 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602662 SAMN22350620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316838/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.699 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602663 SAMN22350102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0318205/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.020 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602664 SAMN22350619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316839/2021 collected_by Laboratory Corporation of America collection_date 2021-09-22 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.244 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602665 SAMN22350731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316841/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.55 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.050 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602666 SAMN22350618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316842/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.792 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602667 SAMN22350365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0316845/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.321 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.314 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602668 SAMN22350730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316843/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.832 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602669 SAMN22350617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316846/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.748 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602670 SAMN22350264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316849/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.442 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602671 SAMN22349969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316852/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.233 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602672 SAMN22349968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316853/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.76 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.398 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602673 SAMN22349967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316855/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602674 SAMN22350729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316857/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602675 SAMN22350263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316858/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602676 SAMN22350302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316864/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.719 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602677 SAMN22350304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316861/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.764 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602678 SAMN22350728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316865/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.357 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602679 SAMN22350303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316862/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602680 SAMN22350741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0316867/2021 collected_by Laboratory Corporation of America collection_date 2021-09-20 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.160 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602681 SAMN22350262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316872/2021 collected_by Laboratory Corporation of America collection_date 2021-09-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.575 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602682 SAMN22350261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316874/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.393 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602683 SAMN22350301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0316880/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.808 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602684 SAMN22350260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316875/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.281 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.865 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602685 SAMN22350259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316876/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602686 SAMN22350616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316881/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.165 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602687 SAMN22349966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316885/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.738 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602688 SAMN22349965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0316886/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.512 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602689 SAMN22350364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0316890/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.944 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602690 SAMN22350363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0316891/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.117 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602691 SAMN22350615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0316888/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 29.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.077 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602692 SAMN22350727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316893/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.036 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602693 SAMN22350725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316895/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.960 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602694 SAMN22350726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0316894/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.795 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602696 SAMN22350253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0316979/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.419 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602697 SAMN22350510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317678/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.545 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602698 SAMN22350509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0317679/2021 collected_by Laboratory Corporation of America collection_date 2021-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602699 SAMN22350067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0317701/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.690 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602700 SAMN22350577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0317700/2021 collected_by Laboratory Corporation of America collection_date 2021-09-27 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.912 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602701 SAMN22350169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0317856/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.594 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602702 SAMN22350458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317855/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.634 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602703 SAMN22350395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0317858/2021 collected_by Laboratory Corporation of America collection_date 2021-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.545 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602704 SAMN22350469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0317430/2021 collected_by Laboratory Corporation of America collection_date 2021-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.716 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10602705 SAMN22349995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0317460/2021 collected_by Laboratory Corporation of America collection_date 2021-09-26 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.336 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated