SRS10611120 SAMN22359064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10556370/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.368 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.249 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.74 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.792 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611121 SAMN22359063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10556424/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.539 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.088 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.739 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.882 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611122 SAMN22359136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10556550/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.597 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.513 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.779 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.135 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611123 SAMN22359135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10557876/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.886 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 10.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.313 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.135 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611124 SAMN22359062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10558286/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.15 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.415 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.51 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.356 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611125 SAMN22359000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10560503/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.359 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.455 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.118 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.215 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611126 SAMN22359134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10561139/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.998 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.178 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611127 SAMN22359133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10561178/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.182 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.695 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611128 SAMN22359061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10561394/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.6 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.116 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.041 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.616 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611129 SAMN22359132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10561917/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.057 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.456 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.373 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611130 SAMN22359131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10562063/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.805 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.463 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.981 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.082 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611131 SAMN22359029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10562199/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.954 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.213 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.533 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.459 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611132 SAMN22359060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10562359/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.454 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.233 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.799 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.833 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611133 SAMN22359059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10562365/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.183 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.588 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.223 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.718 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611134 SAMN22359028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10562385/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.209 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.903 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.322 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.403 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611135 SAMN22359130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10562843/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.474 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.3 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.748 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.76 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611136 SAMN22359027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10562966/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.019 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.597 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.945 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611137 SAMN22359058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10563099/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.176 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.828 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.472 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20.984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611139 SAMN22359129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10563417/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.613 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.295 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.874 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.955 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611140 SAMN22359304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537809/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.662 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.283 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.974 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611141 SAMN22359303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537813/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.132 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.045 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.206 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.136 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611142 SAMN22359302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537820/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.532 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.138 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.012 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.871 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611143 SAMN22359301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537836/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.786 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.44 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.045 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.234 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611144 SAMN22359300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537842/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.269 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.555 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.168 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.703 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611145 SAMN22359299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537845/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.962 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.096 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.917 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611146 SAMN22359298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537862/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.563 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.018 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.547 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.929 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611147 SAMN22359297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537892/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 1 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.931 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.068 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.632 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611148 SAMN22359296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537934/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.373 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.404 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.004 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611149 SAMN22359295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537956/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.142 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.528 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.535 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.724 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611150 SAMN22359294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537960/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.35 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.402 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.59 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.368 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611151 SAMN22359293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537983/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.406 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.633 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.404 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611152 SAMN22359292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538001/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.501 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.475 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.582 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.123 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611153 SAMN22359291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538031/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.531 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.619 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.948 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611154 SAMN22359290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538079/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.008 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.987 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.984 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611155 SAMN22359289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538088/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.975 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.013 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.074 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.884 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611156 SAMN22359288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538100/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.312 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.035 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.683 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.608 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611157 SAMN22359287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538142/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.676 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.204 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.428 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611158 SAMN22359286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538147/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.497 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.596 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.393 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611159 SAMN22359285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538166/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.899 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.716 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.83 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611160 SAMN22359284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538222/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.651 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.65 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.744 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.831 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611161 SAMN22359283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538224/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.174 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.405 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.252 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.905 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611162 SAMN22359282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538255/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.096 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.159 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.193 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.805 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611163 SAMN22359281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538333/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.767 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.415 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.595 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.254 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611164 SAMN22359280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538335/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.865 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.251 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.727 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.767 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611165 SAMN22359279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538449/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.711 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.315 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.866 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611166 SAMN22359278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538547/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.725 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.114 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.409 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611167 SAMN22359277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538549/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.608 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.18 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.397 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611168 SAMN22359276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10538577/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.015 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.716 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.977 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.938 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611169 SAMN22358971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10538821/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.361 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.979 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.406 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.236 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611170 SAMN22359011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10538871/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.103 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.309 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.888 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.331 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611171 SAMN22358970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10538925/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.55 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.023 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.99 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.865 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611172 SAMN22358990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10456938/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.232 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.06 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.24 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.505 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611173 SAMN22358989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10484757/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.793 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.815 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611174 SAMN22358988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10486556/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.737 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.638 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.886 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.209 lineage/clade name AY.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611175 SAMN22358987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10489508/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.384 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.245 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.331 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611176 SAMN22358986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10489534/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.564 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.063 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.446 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.871 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611177 SAMN22358985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10490202/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.244 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.125 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.423 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611178 SAMN22358984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10490531/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.583 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.313 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.51 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.618 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611179 SAMN22358983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493234/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.099 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.17 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.358 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.456 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611180 SAMN22358982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493254/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.115 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.597 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.589 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611181 SAMN22358981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493267/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.634 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.017 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.109 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.77 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611182 SAMN22358980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493318/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.091 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.538 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.646 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.512 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611183 SAMN22358979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10493544/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.076 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.282 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.616 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.341 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611184 SAMN22358978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10498636/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.357 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.905 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.416 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.902 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611185 SAMN22358977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10500718/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.457 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.918 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.312 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611186 SAMN22359118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10507778/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.267 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.061 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.695 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.62 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611187 SAMN22359117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508331/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.937 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.725 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.228 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611188 SAMN22359022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10508373/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.17 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.018 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.554 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.914 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611189 SAMN22359116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508376/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.105 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.324 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.337 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.923 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611190 SAMN22359115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508768/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.077 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.863 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.46 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.206 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611191 SAMN22359114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10508938/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.007 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.803 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.274 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.972 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611192 SAMN22359113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10509391/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.508 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.466 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.821 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611193 SAMN22359112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10510592/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.942 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.1 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.259 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.571 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611194 SAMN22358976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10510880/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.009 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.529 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.225 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.116 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611195 SAMN22359051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10510949/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.596 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.832 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.351 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611196 SAMN22358975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10511058/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.669 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.446 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.98 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.896 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611197 SAMN22359501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10511694/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.142 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.026 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.862 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611198 SAMN22358974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10513696/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.68 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.545 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.83 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.29 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611199 SAMN22359050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10514006/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.8 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.312 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.873 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611200 SAMN22359111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514526/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.264 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.219 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 37.255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611201 SAMN22359110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514823/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.517 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.335 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611202 SAMN22359109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10514833/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.558 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.597 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.554 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.816 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611203 SAMN22359108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10515113/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.365 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.877 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.744 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.682 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611204 SAMN22358969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10538968/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.951 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.278 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.357 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611205 SAMN22358959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10540162/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.51 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.177 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.491 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.256 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611206 SAMN22358958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10540184/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 15 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.494 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.422 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.749 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611207 SAMN22359042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10540191/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.211 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.273 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.654 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611208 SAMN22358957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10540198/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.207 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.037 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.037 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.027 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611209 SAMN22359010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10540410/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.953 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.026 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.576 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611210 SAMN22359009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10540618/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.74 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.881 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611211 SAMN22359275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10540663/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.531 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.078 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.342 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.452 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611212 SAMN22359274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10540784/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.027 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.978 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.195 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.61 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611213 SAMN22359008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10540835/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.266 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.472 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.967 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.934 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611214 SAMN22359273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10540838/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.631 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.46 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.732 lineage/clade name AY.38 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611215 SAMN22359272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10540869/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.964 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.019 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.367 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.773 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611216 SAMN22359271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10540897/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.241 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.831 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.678 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611217 SAMN22359270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10540998/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.658 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.773 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.854 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.845 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611218 SAMN22359269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541000/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.578 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.419 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.636 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.964 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611219 SAMN22359268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541008/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.575 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.56 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.44 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611220 SAMN22359267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541028/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.849 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.145 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.701 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.861 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611221 SAMN22359266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541054/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.086 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.365 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.935 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611222 SAMN22359265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541094/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.509 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.73 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.947 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.781 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611223 SAMN22359264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541235/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.117 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.659 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.067 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.037 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611224 SAMN22359263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541269/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.75 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.018 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.181 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611225 SAMN22359262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541303/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.976 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.795 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.222 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.059 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611226 SAMN22359261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541394/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.047 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.847 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.171 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611227 SAMN22359260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541411/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.254 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.361 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.377 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.547 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611228 SAMN22359259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541421/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.257 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.642 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.357 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.599 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611229 SAMN22359007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10541442/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.601 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.081 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.198 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611230 SAMN22359258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541465/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.526 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.472 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.463 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.94 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611231 SAMN22359257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541466/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.101 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.961 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.287 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611232 SAMN22359256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541521/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.322 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.448 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.641 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.153 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611233 SAMN22359255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541647/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.275 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.461 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.407 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.591 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611234 SAMN22359254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541667/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.106 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.475 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.623 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611235 SAMN22359253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541692/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.776 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.859 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.667 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.641 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611236 SAMN22359252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541725/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.842 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.692 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.881 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.38 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611237 SAMN22359251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541728/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.049 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.279 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.685 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.295 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611238 SAMN22359250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541745/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.464 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.326 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.677 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611239 SAMN22359249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541772/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.5 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.027 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.495 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611240 SAMN22359248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541776/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.39 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.987 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.383 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.44 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611241 SAMN22359247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541805/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.924 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.948 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.252 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.027 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611242 SAMN22359006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10541857/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.287 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.144 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.75 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.876 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611243 SAMN22359246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541932/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.663 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.538 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.12 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.616 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611244 SAMN22359245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541936/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.706 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.341 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.947 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611245 SAMN22359244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541938/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.756 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.974 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.955 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.342 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611246 SAMN22359243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541950/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.065 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.792 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.327 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.563 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611247 SAMN22359242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541955/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.541 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.082 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.315 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.47 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611248 SAMN22359241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541975/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.497 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.649 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.172 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611249 SAMN22359240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10541984/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.672 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.747 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611250 SAMN22359239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542005/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.46 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.021 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.617 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611251 SAMN22359238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542006/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.971 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.699 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.937 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.359 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611252 SAMN22359237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542008/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.904 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.194 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.298 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611253 SAMN22359236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542029/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.993 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.973 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.901 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611254 SAMN22359235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542070/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.908 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.448 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.033 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611255 SAMN22359234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542081/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.163 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.597 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.523 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.558 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611256 SAMN22359233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542083/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.755 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.403 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.483 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.913 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611257 SAMN22359232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542085/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.738 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.537 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.753 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.79 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611258 SAMN22359231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542215/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.49 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.421 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.561 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.182 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611259 SAMN22359230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542219/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.883 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.052 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.419 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611260 SAMN22359229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542274/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.775 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.554 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.876 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611261 SAMN22359228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542282/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.19 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.958 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.76 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611262 SAMN22359227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542322/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.091 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.372 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.541 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.915 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611263 SAMN22359226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542370/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.584 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.931 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.659 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.948 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611264 SAMN22359225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542382/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.036 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.199 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.613 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.844 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611265 SAMN22359224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542404/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.486 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.988 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.433 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611266 SAMN22359005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10542431/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.419 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.572 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.836 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.292 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611267 SAMN22359223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542436/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.67 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.556 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.812 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611268 SAMN22359222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542443/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.889 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.043 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.244 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611269 SAMN22359221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542461/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.756 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.872 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.53 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611270 SAMN22359220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542483/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.068 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.375 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.573 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.57 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611271 SAMN22359219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542494/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.28 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.694 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.236 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611272 SAMN22359218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542496/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.156 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.06 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.399 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611273 SAMN22359217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542644/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.819 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.601 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.756 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611274 SAMN22359216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542648/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.89 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.032 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.003 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 19.924 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611275 SAMN22359215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542673/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.943 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.228 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.135 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.014 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611276 SAMN22359214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542710/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.513 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.458 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611277 SAMN22359213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542791/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.438 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.205 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.427 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.08 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611278 SAMN22359212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542797/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.734 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.653 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.634 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.008 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611279 SAMN22359211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542801/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.949 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.896 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.472 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611280 SAMN22359210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542802/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.116 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.257 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.401 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.059 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611281 SAMN22359209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10542869/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.96 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.169 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.037 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.048 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611282 SAMN22359208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543026/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.553 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.283 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.285 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611283 SAMN22359207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543045/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.687 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.425 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.19 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611284 SAMN22359206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543076/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.149 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.097 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.439 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.234 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611285 SAMN22359204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543139/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.667 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.218 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.99 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.819 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611286 SAMN22359205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543124/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.697 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.746 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.779 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.048 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611287 SAMN22359202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543197/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.291 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.602 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.591 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611288 SAMN22359203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543182/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.74 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.034 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.344 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.87 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611289 SAMN22359201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543209/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.892 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.522 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.84 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.704 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611290 SAMN22359200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543312/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.492 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.646 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611291 SAMN22359199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543380/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.924 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.387 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.001 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.178 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611292 SAMN22359198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543409/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.698 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.478 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.989 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.793 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611293 SAMN22359197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543420/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.927 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.899 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.018 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611294 SAMN22359196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543432/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.626 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.649 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.811 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.312 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611295 SAMN22359195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543557/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.447 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.435 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.444 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.06 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611296 SAMN22359004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10543579/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.76 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.47 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.685 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.108 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611297 SAMN22359194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543564/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.544 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.102 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.289 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611298 SAMN22359193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543594/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.834 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.301 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.811 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.001 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611299 SAMN22359003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10543603/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.804 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.637 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.186 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.982 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611300 SAMN22358994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10605521/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.936 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.966 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.295 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611301 SAMN22358921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10524727/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.356 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.99 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.293 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611302 SAMN22359021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10524794/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.855 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.62 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.706 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611303 SAMN22358925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/TX-CDC-MMB10525088/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.176 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.392 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 32.163 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.787 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611304 SAMN22358966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10525587/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.885 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.124 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.27 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.205 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611305 SAMN22359481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526706/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.271 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.934 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.628 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611306 SAMN22359480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526768/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.996 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.089 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.175 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611307 SAMN22359479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526771/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.463 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.513 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.751 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611308 SAMN22359478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10526798/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.209 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.897 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.176 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.928 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611309 SAMN22359477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10527292/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.438 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.894 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.955 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611310 SAMN22359476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528801/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.973 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.497 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.3 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.942 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611311 SAMN22359475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10528866/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.605 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.559 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.471 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611312 SAMN22359474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529372/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.064 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.911 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 35.492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611313 SAMN22359473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529576/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 31.11 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.481 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.136 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611314 SAMN22359472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529613/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.226 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.087 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.935 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.151 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611315 SAMN22359471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10529616/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.62 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.636 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.857 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.849 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611316 SAMN22359020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10530896/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.746 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.309 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.714 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.494 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611317 SAMN22358963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10530941/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.471 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.834 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.642 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.406 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611318 SAMN22359103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532152/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.855 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.047 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.265 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.789 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611319 SAMN22359019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10532256/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.42 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.776 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.565 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.571 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611320 SAMN22359102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532283/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.976 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.67 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.06 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611321 SAMN22359101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532290/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.979 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.795 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.134 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 20.823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611322 SAMN22359100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532447/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.133 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.376 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.551 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.41 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611323 SAMN22359099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532597/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.301 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.501 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.661 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.107 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611324 SAMN22359098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532645/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.079 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.539 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.319 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.324 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611325 SAMN22359097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532713/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.569 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.248 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.748 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611326 SAMN22359096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532872/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.872 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.427 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.258 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.509 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611327 SAMN22359095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532891/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.498 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.253 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.623 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.19 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611328 SAMN22359470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532916/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.91 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.757 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.88 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611329 SAMN22359469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532920/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.581 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.609 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.724 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.309 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611330 SAMN22359468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532923/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.427 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.965 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.436 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.273 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611331 SAMN22359094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10532924/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.129 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.849 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.168 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.758 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611332 SAMN22359467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532944/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.807 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.75 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.778 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.112 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611333 SAMN22359168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544495/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.117 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.864 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.335 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611334 SAMN22359167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544524/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.592 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.734 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611335 SAMN22359166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544546/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 9.994 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 10.319 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.173 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611336 SAMN22358948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10544609/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.671 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.431 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611337 SAMN22359165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544642/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.971 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.318 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.391 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611338 SAMN22359164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544645/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.6 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.18 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.768 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.628 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611339 SAMN22359163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544689/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.163 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.995 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.356 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611340 SAMN22359162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544691/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.753 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.796 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.48 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611341 SAMN22359161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544709/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.72 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.678 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.006 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611342 SAMN22359160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544727/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.572 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.862 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.675 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.985 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611343 SAMN22359159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544766/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.994 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.053 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.881 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.694 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611344 SAMN22359158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544802/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.17 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.53 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.885 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.465 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611345 SAMN22359157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544837/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.778 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.958 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.942 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.422 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611346 SAMN22359156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544875/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.402 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.714 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.782 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.051 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611347 SAMN22359155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545000/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.016 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.054 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.785 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611348 SAMN22359154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545086/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.53 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.958 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.594 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.213 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611349 SAMN22359153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545093/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.034 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.962 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.935 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.359 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611350 SAMN22359152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545097/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.442 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.788 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.76 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.429 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611351 SAMN22359151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545098/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.932 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.793 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.272 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611352 SAMN22359150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545099/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.589 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.568 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.627 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.854 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611353 SAMN22359149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545216/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.627 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.298 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.651 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611354 SAMN22359148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545265/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.648 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.859 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.22 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.719 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611355 SAMN22359147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545269/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.907 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.291 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.461 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.272 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611356 SAMN22359146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545289/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.386 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.451 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.728 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611357 SAMN22359145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545391/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.282 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.17 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.456 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.159 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611358 SAMN22359002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10545413/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.053 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.186 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.098 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611359 SAMN22359144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10545465/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.754 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.452 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.794 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.391 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611360 SAMN22358947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546006/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.79 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.734 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.56 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611361 SAMN22358946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546012/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.687 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.407 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.993 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.198 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611362 SAMN22358945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546091/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.04 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.306 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.637 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611363 SAMN22358944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546117/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.524 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.076 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.808 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.149 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611364 SAMN22358943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546120/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.981 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.408 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.372 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611365 SAMN22359419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535123/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.768 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.89 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.583 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611366 SAMN22359418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535138/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.344 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.061 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.734 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611367 SAMN22359417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535161/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.584 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.404 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.568 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611368 SAMN22359416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535168/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.785 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.754 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.789 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.875 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611369 SAMN22359415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535213/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.506 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.867 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.913 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.177 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611370 SAMN22359414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535222/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.432 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.166 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.268 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.123 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611371 SAMN22359413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535227/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.327 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.081 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.614 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.212 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611372 SAMN22359017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10535234/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.584 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.476 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.67 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.079 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611373 SAMN22359412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535242/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.446 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.703 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.643 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.548 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611374 SAMN22359411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535256/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.662 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.763 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.406 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.376 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611375 SAMN22358962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10535270/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.506 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.213 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.748 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.143 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611376 SAMN22359410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535293/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.127 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.945 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.321 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.698 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611377 SAMN22359080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10535281/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.641 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.311 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.592 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.506 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611378 SAMN22359078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10535316/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.886 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.853 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.021 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.852 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611379 SAMN22359079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10535310/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.711 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.98 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.838 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.651 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611380 SAMN22359409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535325/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.548 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.645 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.353 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611381 SAMN22359408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535333/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.427 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.238 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.129 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.305 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611382 SAMN22359407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535380/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.981 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.843 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.856 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611383 SAMN22359405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535439/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.23 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.008 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.634 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.016 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611384 SAMN22359406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535409/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.132 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.007 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.184 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.908 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611385 SAMN22359404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535453/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.478 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.652 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.877 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611386 SAMN22359403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535504/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.818 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.612 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.646 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611387 SAMN22359402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535517/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.721 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.237 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.625 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.431 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611388 SAMN22359401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535540/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.872 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.987 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.142 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611389 SAMN22359400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535547/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.593 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.665 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.614 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.623 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611390 SAMN22359399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535626/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.482 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.897 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.292 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.966 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611391 SAMN22359398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535627/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.433 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.34 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.532 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.109 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611392 SAMN22359397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535673/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.226 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.915 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.113 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.513 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611393 SAMN22359396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535713/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.728 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.465 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.031 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611394 SAMN22359395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535735/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.27 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.055 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.134 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611395 SAMN22359394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535744/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.063 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.864 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.991 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.69 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611396 SAMN22359393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535784/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.475 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.66 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.77 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.555 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611397 SAMN22358993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10087920/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.503 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.949 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.553 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.11 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611398 SAMN22358992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10093867/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.292 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.316 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.416 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.673 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611399 SAMN22358991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10114790/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.91 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.975 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.217 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611400 SAMN22359052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10132901/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.972 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.163 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.08 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611401 SAMN22359391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535849/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.468 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.202 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.786 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611402 SAMN22359392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535832/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.257 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.344 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.437 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611403 SAMN22359390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535873/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.95 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.714 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.867 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.162 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611404 SAMN22359388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535895/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.132 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.708 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.371 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.685 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611405 SAMN22359389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535894/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.355 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.345 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.37 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.821 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611406 SAMN22359387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535919/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.381 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.207 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.422 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.571 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611407 SAMN22359386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535958/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.468 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.968 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.881 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.672 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611408 SAMN22359385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535961/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.083 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.331 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.916 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611409 SAMN22359384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535977/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.302 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.844 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.283 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.191 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611410 SAMN22359383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535997/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.606 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.118 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.569 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.531 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611411 SAMN22359381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536019/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.476 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.006 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.485 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.843 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611412 SAMN22359382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535999/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.861 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.703 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.845 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.785 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611413 SAMN22359380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536111/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.451 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.425 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.629 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.867 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611414 SAMN22359379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536147/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.197 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.613 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.868 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.578 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611415 SAMN22358961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10536145/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.247 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.625 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 29.359 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.907 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611416 SAMN22358960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10536187/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.32 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.025 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.637 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611417 SAMN22359378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536237/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.928 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.367 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.762 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.202 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611418 SAMN22359376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536262/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.078 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.314 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.92 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.908 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611419 SAMN22359377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536249/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.825 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.693 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.847 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.002 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611420 SAMN22359375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536278/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.973 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.595 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.806 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.177 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611421 SAMN22359374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536287/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.309 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.743 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.148 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.824 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611422 SAMN22359373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536309/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.806 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.344 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.765 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.237 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611423 SAMN22359372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536316/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.383 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.751 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.165 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611424 SAMN22359371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536400/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.311 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.553 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.001 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.893 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611425 SAMN22359370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536402/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.3 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.357 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.24 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.363 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611426 SAMN22359369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536415/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.21 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.685 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.944 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611427 SAMN22359368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536422/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.031 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.823 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.073 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.38 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611428 SAMN22359367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536442/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.099 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.213 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.436 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.858 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611429 SAMN22359366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536443/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.612 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.899 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.477 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.113 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611430 SAMN22359365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536449/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.119 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.992 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.028 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.51 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611431 SAMN22359364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536501/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.218 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.263 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.72 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.481 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611432 SAMN22359128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10563448/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.214 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.068 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.298 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.395 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611433 SAMN22359016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10536552/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.911 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.895 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.815 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.874 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611434 SAMN22358999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10564872/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.74 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.866 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.24 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.306 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611435 SAMN22359057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10563849/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.448 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.986 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.417 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.278 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611436 SAMN22359127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10565203/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.338 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.059 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.69 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.186 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611437 SAMN22358998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10565453/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.497 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.891 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.091 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.789 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611438 SAMN22358964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10566940/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.671 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.191 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.955 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611439 SAMN22359126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10567031/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.26 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.265 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.362 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.923 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611440 SAMN22359056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10568279/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.014 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.946 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.625 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.007 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611441 SAMN22359055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10568913/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.172 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.358 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.599 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611442 SAMN22359125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10569432/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.239 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.847 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.579 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.399 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611443 SAMN22358997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10569149/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.149 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.178 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.522 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611444 SAMN22359124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10570028/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.184 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.957 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.273 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611445 SAMN22359025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10570555/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.458 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.659 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.225 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611446 SAMN22359123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10570894/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.366 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.069 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.17 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.294 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611447 SAMN22359122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10571627/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.769 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.137 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.442 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611448 SAMN22359121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10571937/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.311 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.056 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.863 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.939 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611449 SAMN22359120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10574522/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.172 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.785 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.907 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.953 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611450 SAMN22358923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10576263/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.192 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.03 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.333 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.301 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611451 SAMN22358937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10575721/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.967 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.935 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.19 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611452 SAMN22358936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10576794/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.415 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.936 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.398 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611453 SAMN22358935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10576827/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.52 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.297 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.067 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611454 SAMN22358934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10576851/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.413 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.628 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.7 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.053 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611455 SAMN22358933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10576935/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.945 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.86 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.002 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611456 SAMN22358931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10576972/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.397 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.287 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.651 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.667 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611457 SAMN22358932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10576945/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.636 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.487 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.869 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.572 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611458 SAMN22358930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10585350/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.343 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.697 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.228 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611459 SAMN22358929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10585855/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.105 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.8 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.112 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.943 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611460 SAMN22358928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10587078/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.946 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.263 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.997 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.431 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611461 SAMN22358927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10590042/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.86 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.913 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.96 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.785 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611462 SAMN22358926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10595336/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.272 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.281 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.495 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.788 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611463 SAMN22358995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10605493/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.612 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.971 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.319 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611464 SAMN22358996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10605439/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.899 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.876 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.868 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.023 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611465 SAMN22359363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536599/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.245 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.83 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611466 SAMN22359015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10536637/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.89 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.633 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.167 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.731 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611467 SAMN22359362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536614/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.31 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.35 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611468 SAMN22359361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536665/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.839 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.462 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.341 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.686 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611469 SAMN22359360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536696/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.353 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.844 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.287 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.786 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611470 SAMN22359014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10536717/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.616 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.977 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.496 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.579 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611471 SAMN22359013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10536738/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.084 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.746 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.995 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.349 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611472 SAMN22359359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536740/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.254 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.415 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.302 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.958 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611473 SAMN22359358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536773/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.404 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.214 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.517 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.226 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611474 SAMN22359356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536786/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.691 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.616 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.005 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.464 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611475 SAMN22359357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536779/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.842 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.839 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.979 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.954 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611476 SAMN22359355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536791/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.489 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.384 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.888 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611477 SAMN22359354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536819/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.112 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.042 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.291 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.887 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611478 SAMN22359353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536822/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.517 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.358 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.151 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611479 SAMN22359012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10536796/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.907 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.587 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.119 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 31.863 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611480 SAMN22359352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536830/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.948 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.873 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.851 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611481 SAMN22359351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536844/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.464 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.677 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.884 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.53 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611482 SAMN22359053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/IL-CDC-MMB10536832/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.048 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.859 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.908 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.259 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611483 SAMN22359349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536862/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.059 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.661 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.985 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.001 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611484 SAMN22359350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536855/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.592 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.991 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.006 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.594 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611485 SAMN22359348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536881/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.483 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.001 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.861 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611486 SAMN22359347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536931/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.699 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.33 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.602 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.724 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611487 SAMN22359346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536949/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.18 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.626 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.202 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611488 SAMN22359345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536958/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.078 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.428 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.904 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.968 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611489 SAMN22359344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536971/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.404 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.325 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.52 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.924 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611490 SAMN22359343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10536992/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.694 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.805 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.302 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.903 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611491 SAMN22359342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537001/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.511 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.562 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.439 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611492 SAMN22359341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537013/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 69 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.996 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.966 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.921 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.131 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611493 SAMN22359340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537016/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.611 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.406 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.516 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.854 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611494 SAMN22359339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537038/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.132 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.263 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.276 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611495 SAMN22359338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537040/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.258 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.837 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.223 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.842 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611496 SAMN22359335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537070/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.058 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.837 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.97 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.218 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611497 SAMN22359336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537062/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.82 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.871 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.769 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.647 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611498 SAMN22359337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537050/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.513 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.047 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.608 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.433 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611499 SAMN22359334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537071/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.563 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.956 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.164 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611500 SAMN22359333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537082/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.433 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.94 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.85 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611501 SAMN22359332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537086/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.977 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.832 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.543 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611502 SAMN22359331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537104/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 48 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.077 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.891 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.348 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611503 SAMN22359330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537119/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.073 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.213 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611504 SAMN22359329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537120/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.907 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.136 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.885 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611505 SAMN22359328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537145/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.182 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.976 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611506 SAMN22359327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537158/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.535 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.187 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.574 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.516 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611507 SAMN22359326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537177/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.616 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.267 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.454 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.493 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611508 SAMN22359325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537209/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.003 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.529 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.316 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611509 SAMN22359324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537232/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.816 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.702 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.827 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611510 SAMN22359323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537248/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.877 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.635 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.228 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.137 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611511 SAMN22359322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537254/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.607 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.12 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.38 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611512 SAMN22359321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537298/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.67 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.507 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.721 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.512 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611513 SAMN22359320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537375/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.438 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.216 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.722 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.311 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611514 SAMN22359319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537376/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.499 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.515 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611515 SAMN22359318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537441/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.093 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.412 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.836 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611516 SAMN22359317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537456/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.629 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.386 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.799 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.086 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611517 SAMN22359316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537479/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.706 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.737 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.105 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.971 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611518 SAMN22359315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537488/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.801 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.618 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.976 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.731 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611519 SAMN22359314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537496/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.426 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.664 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.818 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611520 SAMN22359313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537504/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.89 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.453 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.209 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611521 SAMN22359312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537656/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.753 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.952 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.108 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.145 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611522 SAMN22359311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537668/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.234 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.424 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.844 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.019 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611523 SAMN22359310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537669/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.036 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.944 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.473 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611524 SAMN22359309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537682/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.887 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.051 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.728 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611525 SAMN22359307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537726/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.144 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.127 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.248 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.981 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611526 SAMN22359308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537721/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.194 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.415 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.979 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611527 SAMN22359306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537793/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.836 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.496 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.678 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.366 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611528 SAMN22359305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10537805/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.565 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.706 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.742 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.39 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611529 SAMN22359192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543608/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.212 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.295 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.228 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611530 SAMN22359191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543628/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.496 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.782 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.311 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611531 SAMN22359190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543647/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.035 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.959 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.444 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611532 SAMN22358956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10543668/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.589 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.36 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.682 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.833 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611533 SAMN22358954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10543854/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.375 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.158 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.309 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.057 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611534 SAMN22358955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10543814/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.036 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.378 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.928 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.189 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611535 SAMN22359189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543688/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.184 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.112 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.34 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611536 SAMN22358953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10543905/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.446 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.778 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.38 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611537 SAMN22359188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543906/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.175 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.152 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.593 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.991 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611538 SAMN22359187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543948/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.727 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.473 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.855 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611539 SAMN22359186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10543951/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.244 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.606 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.001 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.039 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611540 SAMN22359185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544025/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.818 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.364 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.909 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611541 SAMN22359184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544029/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.505 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.725 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.345 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611542 SAMN22359183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544041/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 28.098 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 28.375 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 28.298 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.126 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611543 SAMN22359182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544048/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.244 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.067 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.508 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.994 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611544 SAMN22359180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544070/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.824 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.347 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.078 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.824 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611545 SAMN22359181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544066/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.072 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.437 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.085 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611546 SAMN22358952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10544139/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 57 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.835 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.85 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.911 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.453 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611547 SAMN22359179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544166/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.697 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.183 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.523 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611548 SAMN22359178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544243/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.011 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.549 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.974 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611549 SAMN22359177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544269/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.32 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.837 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.961 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611550 SAMN22359175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544296/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.745 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.636 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.095 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.49 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611551 SAMN22359176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544292/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.008 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.183 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.735 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.461 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611552 SAMN22359174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544309/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.957 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.661 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.979 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 32.805 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611553 SAMN22359173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544364/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.537 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.52 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.665 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.088 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611554 SAMN22358951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10544368/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.116 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.906 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.065 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.89 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611555 SAMN22359172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544372/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.847 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.196 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.032 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.189 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611556 SAMN22359171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544393/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.98 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.792 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.996 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.324 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611557 SAMN22359170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544397/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.27 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.835 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.106 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 28.49 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611558 SAMN22358950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10544438/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.952 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.468 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.198 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611559 SAMN22359169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10544453/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.158 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.378 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.102 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.637 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611560 SAMN22358949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10544483/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 11.36 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.747 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.336 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611561 SAMN22358942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546124/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 34 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.853 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.88 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.871 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611562 SAMN22358941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546143/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.943 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.972 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.598 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.943 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611563 SAMN22358940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546170/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.492 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.73 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.977 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611564 SAMN22358939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546179/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.222 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.389 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.264 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.104 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611565 SAMN22358938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/SC-CDC-MMB10546216/2021 collected_by Mako Medical collection_date 2021-09-19 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.564 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.653 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.542 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.593 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611566 SAMN22359041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10547618/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.648 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.731 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.962 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611567 SAMN22359040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10548012/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.361 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.275 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.884 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.59 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611568 SAMN22359077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10548439/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.787 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.053 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.754 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611569 SAMN22359076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10548558/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.152 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.779 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.486 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.08 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611570 SAMN22359075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10549167/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.338 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.206 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.926 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.076 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611571 SAMN22359074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10549569/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.429 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.722 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.042 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611572 SAMN22359039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10549583/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.327 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.347 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.588 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.883 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611573 SAMN22359038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10549620/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 1 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.342 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.628 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.061 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611574 SAMN22359143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10549946/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.95 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.653 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.018 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611575 SAMN22359119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/FL-CDC-MMB10550029/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.405 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.111 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.802 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611576 SAMN22359037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10550062/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.848 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.212 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.908 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611577 SAMN22359036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10550507/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.169 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.233 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.585 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.894 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611578 SAMN22359073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10550759/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.049 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.126 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.048 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.324 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611579 SAMN22359023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MT-CDC-MMB10550762/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.796 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.723 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.068 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.543 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611580 SAMN22359035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10550765/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.08 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.879 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.297 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.881 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611581 SAMN22359034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10550771/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.593 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.301 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.63 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611582 SAMN22359033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10550787/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.641 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.732 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.222 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611583 SAMN22359072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10550804/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.246 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.768 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.006 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.957 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611584 SAMN22359031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10551020/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.108 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.756 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.286 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.638 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611585 SAMN22359032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10550887/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.664 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.284 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.898 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.58 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611586 SAMN22358924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/VA-CDC-MMB10551354/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.471 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.411 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.442 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.778 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611587 SAMN22359142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10551522/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.127 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.984 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.425 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 33.998 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611588 SAMN22358965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/PA-CDC-MMB10552206/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.853 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.306 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611589 SAMN22359141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10552235/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.598 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.029 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.521 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611590 SAMN22358968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10552713/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.675 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.69 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.584 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.728 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611591 SAMN22359140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10552786/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.047 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.865 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.407 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611592 SAMN22359139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10552894/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.97 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.598 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.955 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.266 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611593 SAMN22359049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10515696/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.761 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.555 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.791 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.132 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611594 SAMN22359499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516559/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.786 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.982 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.162 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.422 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611595 SAMN22359500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516396/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.737 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.526 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.661 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.608 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611596 SAMN22359498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10516850/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.101 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.176 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.998 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611597 SAMN22359107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10517170/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.951 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 29.756 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.872 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.089 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611598 SAMN22359497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517507/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.115 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.746 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.082 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611599 SAMN22359496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517693/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.256 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.396 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.768 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.374 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611600 SAMN22358973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10518048/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.1 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.255 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.032 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.584 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611601 SAMN22359495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10517807/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.68 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.408 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.721 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611602 SAMN22359494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10518565/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.965 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.191 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.435 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611603 SAMN22359493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519108/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.075 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.835 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.785 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.965 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611604 SAMN22358972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10519246/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 97 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.843 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.309 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.383 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.469 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611605 SAMN22359492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519148/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.421 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.464 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.829 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.674 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611606 SAMN22359491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10519682/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.935 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.823 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.788 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.673 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611607 SAMN22359048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10520002/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.124 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.446 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.054 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611608 SAMN22359490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520364/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.802 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.498 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.913 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 36.95 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611609 SAMN22359488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10521213/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 27.61 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.771 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.659 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.644 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611610 SAMN22359489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10520907/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.036 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.913 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.299 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.067 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611611 SAMN22359047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10522039/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.899 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.816 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.343 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611612 SAMN22359046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10522062/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.879 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.963 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.593 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.565 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611613 SAMN22359487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522108/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.081 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.109 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.358 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.036 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611614 SAMN22359485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522813/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.295 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.486 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.313 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.402 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611615 SAMN22359486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10522534/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 29.925 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 30.995 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 30.041 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.716 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611616 SAMN22358922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/WV-CDC-MMB10522886/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.979 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.058 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.033 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.667 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611617 SAMN22359106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10523000/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.477 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.964 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.719 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.765 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611618 SAMN22359484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523227/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.749 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.754 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.956 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611619 SAMN22359045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10523581/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.134 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.923 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.206 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.177 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611620 SAMN22359105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10523754/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.249 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.949 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.312 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.438 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611621 SAMN22359483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10523876/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race I collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 30.973 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 31.775 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 31.408 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.91 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611622 SAMN22359104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10523768/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.267 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.998 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.35 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.828 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611623 SAMN22359044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10523927/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.551 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.999 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 24.415 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.757 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611624 SAMN22359482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10524580/2021 collected_by Mako Medical collection_date 2021-09-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 26.727 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 27.427 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 27.057 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611625 SAMN22359465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532951/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.75 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.423 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.905 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.725 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611626 SAMN22359466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532945/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.163 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.001 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.24 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.323 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611627 SAMN22359464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10532969/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.193 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.468 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.194 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.682 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611628 SAMN22359463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533010/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.964 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 23.164 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.419 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.682 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611629 SAMN22359093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533025/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.461 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.113 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.736 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611630 SAMN22359462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533128/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.447 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.979 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.023 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.325 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611631 SAMN22359461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533156/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.892 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.314 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.177 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.197 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611632 SAMN22359092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533197/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.143 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.777 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.149 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.147 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611633 SAMN22359091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533287/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 21.286 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.686 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 21.455 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.659 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611634 SAMN22359090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533296/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.554 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.469 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.567 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.555 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611635 SAMN22359089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533323/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.469 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.969 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.138 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.83 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611636 SAMN22359459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533364/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.476 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.64 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.526 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.609 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611637 SAMN22359460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533357/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.242 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.009 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.123 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.529 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611638 SAMN22359458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533397/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.715 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.222 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.614 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611639 SAMN22359024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MI-CDC-MMB10533559/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.816 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.565 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.564 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611640 SAMN22359457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533452/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.357 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.108 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.256 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.82 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611641 SAMN22359088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533583/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.924 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.147 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.469 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.478 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611642 SAMN22359087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533585/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.392 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.307 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.749 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.556 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611643 SAMN22359456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533628/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.114 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.197 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 10.456 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 34.02 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611644 SAMN22359086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533691/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.26 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.472 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.107 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.467 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611645 SAMN22359054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/IL-CDC-MMB10533755/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.428 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.791 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.986 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611646 SAMN22359453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533822/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.774 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.848 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.585 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611647 SAMN22359455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533754/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.423 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.206 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.51 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611648 SAMN22359454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533817/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.357 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.169 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.207 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611649 SAMN22359085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533910/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.111 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.855 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.227 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611650 SAMN22359043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10533859/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.614 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.278 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.724 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.715 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611651 SAMN22359452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10533955/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.486 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.474 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.936 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611652 SAMN22359084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10533962/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.655 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.366 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.543 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611653 SAMN22359451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534064/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.274 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.716 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611654 SAMN22359450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534138/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.869 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.049 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.028 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.49 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611655 SAMN22359083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10534080/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.598 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.258 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.47 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.71 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611656 SAMN22359449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534141/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 24.753 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.01 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.217 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.037 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611657 SAMN22359448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534146/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.424 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.643 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.291 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611658 SAMN22359446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534169/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.502 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.642 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.541 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.677 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611659 SAMN22359445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534174/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.814 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.736 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.88 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.02 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611660 SAMN22359447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534153/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.199 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.232 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.992 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.358 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611661 SAMN22359444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534250/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.477 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.574 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.662 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.246 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611662 SAMN22359443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534293/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.757 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.774 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.886 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.135 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611663 SAMN22359082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10534353/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race N collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.615 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.544 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.929 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.524 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611664 SAMN22359442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534373/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.01 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.6 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.142 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.908 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611665 SAMN22359441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534389/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.995 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.55 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.92 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.851 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611666 SAMN22359081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10534385/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.741 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.781 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.875 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.196 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611667 SAMN22359439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534450/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.215 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 12.955 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.265 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611668 SAMN22359440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534413/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.879 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.36 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.415 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 29.986 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611669 SAMN22359438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534490/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.57 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.348 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.339 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 30.988 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611670 SAMN22359437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534531/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.949 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.833 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.159 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611671 SAMN22359435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534624/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 10.957 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 11.964 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 11.038 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611672 SAMN22359436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534592/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.265 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.251 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.449 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611673 SAMN22359434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534646/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race B collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.337 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.459 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.48 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611674 SAMN22359432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534797/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.492 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.487 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.49 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.608 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611675 SAMN22359433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534751/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.226 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.235 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.493 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611676 SAMN22359431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534807/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.646 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.98 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.511 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.836 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611677 SAMN22359428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534834/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.966 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.937 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.01 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.568 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611678 SAMN22359429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534831/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.581 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.265 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.575 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.013 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611679 SAMN22359430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534818/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.002 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.781 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.982 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.777 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611680 SAMN22359427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534841/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 12.808 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 13.65 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 12.733 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 27.55 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611681 SAMN22359018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10534847/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.962 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 26.086 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 26.222 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611682 SAMN22359426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534848/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 20.044 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.727 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 20.233 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.535 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611683 SAMN22359425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534849/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.261 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.845 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.155 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.988 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611684 SAMN22359424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534886/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 23.285 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 24.22 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 23.408 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611685 SAMN22359423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10534889/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.962 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 20.571 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.685 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.776 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611686 SAMN22359422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535012/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.881 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.751 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.869 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.716 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611687 SAMN22359421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535084/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.129 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.878 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.191 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 24.671 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611688 SAMN22359071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10553547/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 22.004 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 22.915 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 22.335 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.429 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611689 SAMN22359420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10535105/2021 collected_by Mako Medical collection_date 2021-09-18 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.235 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 14.063 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 13.635 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 21.387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611690 SAMN22359070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10553579/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race O collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 25.364 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 25.68 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 25.48 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611691 SAMN22359030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10554071/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 13.344 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 15.017 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 14.044 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.345 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611692 SAMN22359069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10554369/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 15.351 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.29 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.002 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 26.502 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611693 SAMN22359138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10554643/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.452 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.136 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.44 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.275 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611694 SAMN22359068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10554976/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.351 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.818 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.526 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611695 SAMN22359137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/CO-CDC-MMB10554947/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.839 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.589 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 16.777 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.528 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611696 SAMN22359067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10554990/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race A collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.413 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.836 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.452 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611697 SAMN22358967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/OH-CDC-MMB10555549/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 18.414 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 19.151 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 18.349 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 23.929 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611698 SAMN22359001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/NC-CDC-MMB10555560/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 19.623 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 21.066 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 19.978 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 22.709 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611699 SAMN22359065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10555676/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 14.872 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 16.174 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 15.126 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.594 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611700 SAMN22359066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/GA-CDC-MMB10555646/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race W collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 16.707 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 17.898 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.004 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.495 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10611138 SAMN22359026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 738870 PRJNA738870 Isolate SARS-CoV-2/Human/USA/MD-CDC-MMB10563173/2021 collected_by Mako Medical collection_date 2021-09-20 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 ORF1ab diagnostic_pcr_protocol_1 TaqPath diagnostic_pcr_Ct_value_1 17.355 diagnostic_gene_name_2 N gene diagnostic_pcr_protocol_2 TaqPath diagnostic_pcr_Ct_value_2 18.799 diagnostic_gene_name_3 S gene diagnostic_pcr_protocol_3 TaqPath diagnostic_pcr_Ct_value_3 17.837 diagnostic_gene_name_4 MS2 diagnostic_pcr_protocol_4 TaqPath diagnostic_pcr_Ct_value_4 25.963 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated