SRS10634571 SAMN22404205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014659/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.45 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634572 SAMN22404204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014660/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.45 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634573 SAMN22404203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014664/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-22 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.655 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634574 SAMN22404230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014666/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-13 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634575 SAMN22404136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014673/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634576 SAMN22404202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014671/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.09 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634577 SAMN22404191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014680/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-26 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.722 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634578 SAMN22404256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014682/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634579 SAMN22404229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014684/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.33 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634580 SAMN22404115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014689/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-05 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634581 SAMN22404190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014690/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-19 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.3613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634582 SAMN22404255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014687/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634583 SAMN22404081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014686/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-30 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.96 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634584 SAMN22404189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014691/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-24 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.2011 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634585 SAMN22404188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014692/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-27 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.2772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634586 SAMN22404114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014693/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-14 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634587 SAMN22404254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014694/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.4 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634588 SAMN22404228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014696/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28.17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634589 SAMN22404253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014695/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-17 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634590 SAMN22404227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014697/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 30.04 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634591 SAMN22404187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014752/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-25 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.6778 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634592 SAMN22404226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014753/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.55 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634593 SAMN22404225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014755/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.13 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634594 SAMN22404079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014757/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-10-01 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.76 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634595 SAMN22404080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014756/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634596 SAMN22404252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014758/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-17 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634597 SAMN22404251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014759/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-21 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634598 SAMN22404186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014761/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-21 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.2016 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634599 SAMN22404078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014762/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-30 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.35 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634600 SAMN22404250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014764/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-21 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634601 SAMN22404249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014765/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-24 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634602 SAMN22404248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014767/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.7 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634603 SAMN22404096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014951/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-08-31 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634604 SAMN22404095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014952/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634605 SAMN22404134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014953/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.8 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634606 SAMN22404198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014955/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634607 SAMN22404133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014956/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634608 SAMN22404059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014957/2021 collected_by SD Public Health Laboratory collection_date 2021-09-24 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634609 SAMN22404058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014958/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634610 SAMN22404197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014961/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 9.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634611 SAMN22404132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014962/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.1 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634612 SAMN22404094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014963/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-17 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634613 SAMN22404092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014965/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634614 SAMN22404093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014964/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634615 SAMN22404057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014966/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634616 SAMN22404056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014967/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634617 SAMN22404055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014969/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634618 SAMN22404054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014970/2021 collected_by SD Public Health Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634619 SAMN22404174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5014971/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.64 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634620 SAMN22404173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5014972/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634621 SAMN22404053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014973/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634622 SAMN22404052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014974/2021 collected_by SD Public Health Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634623 SAMN22404051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014975/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634624 SAMN22404050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014976/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634625 SAMN22404131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014978/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634626 SAMN22404172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5014977/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.34 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634627 SAMN22404196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014979/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.2 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634628 SAMN22404049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014980/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634629 SAMN22404091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014982/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634630 SAMN22404090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014983/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-27 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634631 SAMN22404089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014984/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634632 SAMN22404048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014985/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634633 SAMN22404171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5014986/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-22 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634634 SAMN22404047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014987/2021 collected_by SD Public Health Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634635 SAMN22404224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014768/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28.07 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634636 SAMN22404113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014769/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-13 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634637 SAMN22404185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014770/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-26 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.0058 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634638 SAMN22404111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014772/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-14 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634639 SAMN22404112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014771/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-10 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634640 SAMN22404184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014773/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-26 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.4784 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634641 SAMN22404110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014774/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634642 SAMN22404183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014776/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-23 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.1282 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634643 SAMN22404182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014777/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-25 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.3745 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634644 SAMN22404108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014780/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-12 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634645 SAMN22404109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014779/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-13 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634646 SAMN22404181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014778/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-26 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.4847 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634647 SAMN22404077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014781/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-30 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.6 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634648 SAMN22404247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014782/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634649 SAMN22404076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014784/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-10-01 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.92 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634650 SAMN22404223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014785/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634651 SAMN22404246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014786/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634652 SAMN22404222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014787/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.82 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634653 SAMN22404180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014788/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-20 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.6112 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634654 SAMN22404106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014791/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634655 SAMN22404107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014789/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634656 SAMN22404179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014790/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-25 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.5204 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634657 SAMN22404221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014792/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.77 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634658 SAMN22404245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014795/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-21 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634659 SAMN22404244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014796/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-17 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634660 SAMN22404075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014798/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634661 SAMN22404178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014799/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-20 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.3647 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634662 SAMN22404220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014851/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 30.28 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634663 SAMN22404243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014853/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-16 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634664 SAMN22404074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014855/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-30 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.73 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634665 SAMN22404177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014858/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-20 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.298 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634666 SAMN22404149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014492/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.88 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634667 SAMN22404073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014856/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-10-01 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.63 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634668 SAMN22404148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014493/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-16 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.26 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634669 SAMN22404147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014494/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-19 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.87 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634670 SAMN22404238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014498/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-15 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634671 SAMN22404237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014499/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-11 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634672 SAMN22404216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014551/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634673 SAMN22404215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014552/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.41 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634674 SAMN22404214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014553/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.36 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634675 SAMN22404213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014554/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.32 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634676 SAMN22404236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014555/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-11 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634677 SAMN22404235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014556/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-13 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634678 SAMN22404212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014559/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634679 SAMN22404211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014562/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634680 SAMN22404146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014563/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-18 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.12 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634681 SAMN22404234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014568/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-13 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634682 SAMN22404210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014565/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-20 isolation_source Anterior nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.83 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634683 SAMN22404145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014571/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.27 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634684 SAMN22404144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014572/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 11.53 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634685 SAMN22404143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014575/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-16 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.83 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634686 SAMN22404142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014578/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634687 SAMN22404141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014579/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-17 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.11 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634688 SAMN22404140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014580/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.22 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634689 SAMN22404139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014581/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-17 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634690 SAMN22404209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014585/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634691 SAMN22404233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014589/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-13 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634692 SAMN22404138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014590/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-20 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28.92 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634693 SAMN22404137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014592/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-15 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.48 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634694 SAMN22404232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014595/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-14 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634695 SAMN22404231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014596/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-11 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634696 SAMN22404208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014599/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-23 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.766 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634697 SAMN22404207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014651/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.55 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634698 SAMN22404206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014652/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source Nasal midturbinate swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634699 SAMN22404170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5014988/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634700 SAMN22404087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014991/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634701 SAMN22404088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014990/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634702 SAMN22404130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014992/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634703 SAMN22404195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014993/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.9 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634704 SAMN22404129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014995/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.9 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634705 SAMN22404046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014996/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634706 SAMN22404045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014997/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.8 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634707 SAMN22404086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014998/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634708 SAMN22404085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014999/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634709 SAMN22404194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5015000/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 9.8 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634710 SAMN22404128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015052/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634711 SAMN22404193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5015051/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634712 SAMN22404044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5015054/2021 collected_by SD Public Health Laboratory collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.6 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634713 SAMN22404043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5015055/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 11.7 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634714 SAMN22404192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5015056/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634715 SAMN22404127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015057/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634716 SAMN22404084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5015060/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634717 SAMN22404083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5015061/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634718 SAMN22404082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5015062/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634719 SAMN22404126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015064/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.6 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634720 SAMN22404169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015065/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634721 SAMN22404168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015067/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.12 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634722 SAMN22404042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5015066/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634723 SAMN22404041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5015068/2021 collected_by SD Public Health Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634724 SAMN22404040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5015069/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634725 SAMN22404167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015077/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634726 SAMN22404166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015078/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634727 SAMN22404125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015084/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634728 SAMN22404124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015086/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634729 SAMN22404165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015090/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 10.6 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634730 SAMN22404164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015091/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.6 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634731 SAMN22404150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5014482/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-16 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.62 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634732 SAMN22404218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014483/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634733 SAMN22404239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5014485/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-13 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634734 SAMN22404217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IL-CDC-2-5014487/2021 collected_by IL Dept. of Public Health Springfield Laboratory collection_date 2021-09-20 isolation_source Anterior nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634735 SAMN22404242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014859/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-18 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634736 SAMN22404241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014860/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634737 SAMN22404072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014861/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-30 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634738 SAMN22404219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5014863/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.79 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634739 SAMN22404240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5014865/2021 collected_by CA-Los Angeles County Public Health Laboratory collection_date 2021-09-15 isolation_source Nasal midturbinate swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.6 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634740 SAMN22404071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014866/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-10-01 isolation_source Anterior nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.42 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634741 SAMN22404070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SC-CDC-2-5014867/2021 collected_by SC Dept of Health and Env. Control-Bureau of Laboratories collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634742 SAMN22404104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014870/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-16 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634743 SAMN22404105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014868/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634744 SAMN22404176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MI-CDC-2-5014871/2021 collected_by MI - Michigan Department of Health and Human Services - Bureau of Laboratories collection_date 2021-09-22 isolation_source Unknown geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.1571 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634745 SAMN22404103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014872/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-14 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634746 SAMN22404069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014877/2021 collected_by SD Public Health Laboratory collection_date 2021-09-26 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.4 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634747 SAMN22404068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014878/2021 collected_by SD Public Health Laboratory collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634748 SAMN22404102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014879/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-24 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634749 SAMN22404100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014881/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634750 SAMN22404101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014880/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-11 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634751 SAMN22404135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5014884/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634752 SAMN22404175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5014886/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.29 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634753 SAMN22404201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014885/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634754 SAMN22404067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014887/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634755 SAMN22404065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014889/2021 collected_by SD Public Health Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634756 SAMN22404064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014890/2021 collected_by SD Public Health Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634757 SAMN22404066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014888/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634758 SAMN22404200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014891/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-20 isolation_source Oral swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Oral swab collection_method Oral swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634759 SAMN22404199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/LA-CDC-2-5014892/2021 collected_by LA Office of Public Health Laboratories collection_date 2021-09-25 isolation_source nasopharyngeal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 11.9 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634760 SAMN22404098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014894/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-21 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634761 SAMN22404099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014893/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634762 SAMN22404062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014897/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634763 SAMN22404061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014898/2021 collected_by SD Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.2 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634764 SAMN22404063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014896/2021 collected_by SD Public Health Laboratory collection_date 2021-09-25 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634765 SAMN22404060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5014899/2021 collected_by SD Public Health Laboratory collection_date 2021-09-25 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634766 SAMN22404097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-5014900/2021 collected_by PA Department of Health, Bureau of Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634767 SAMN22404163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015097/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.3 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634768 SAMN22404162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015098/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634769 SAMN22404160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015160/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634770 SAMN22404159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015162/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634771 SAMN22404161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015099/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634772 SAMN22404123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015163/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.2 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634773 SAMN22404122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015164/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.9 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634774 SAMN22404121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015167/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634775 SAMN22404119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015173/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634776 SAMN22404120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015171/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634777 SAMN22404158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015179/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.2 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634778 SAMN22404157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015181/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634779 SAMN22404118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015184/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634780 SAMN22404156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015187/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.3 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634781 SAMN22404155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015188/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.8 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634782 SAMN22404154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015195/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634783 SAMN22404153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015196/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 10.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634784 SAMN22404152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015257/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634785 SAMN22404151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-5015258/2021 collected_by MN PHL Division, Minnesota Department of Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.2 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634786 SAMN22404117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015265/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10634787 SAMN22404116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NM-CDC-2-5015266/2021 collected_by NM Dept. Health, Scientific Laboratory Division collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated