<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="2021-04-MLZ-Barcode80_4085" accession="SRS10644714">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS10644714</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN22416227</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>Barcode80_MLZ-RI-1ST-MU</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>2697049</TAXON_ID>
      <SCIENTIFIC_NAME>Severe acute respiratory syndrome coronavirus 2</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>A related case with first symptomatic infection in the patient MLZ-09-06-21-8272 by SARS-CoV-2 Mu VOI.</DESCRIPTION>
    <SAMPLE_LINKS>
      <SAMPLE_LINK>
        <XREF_LINK>
          <DB>bioproject</DB>
          <ID>772763</ID>
          <LABEL>PRJNA772763</LABEL>
        </XREF_LINK>
      </SAMPLE_LINK>
    </SAMPLE_LINKS>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>collected_by</TAG>
        <VALUE>Laboratorio Salud Pblica de Caldas (DTSC)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection_date</TAG>
        <VALUE>2021-04-14</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_name</TAG>
        <VALUE>Colombia: Manizales</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host</TAG>
        <VALUE>Homo sapiens</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_disease</TAG>
        <VALUE>COVID-19 asymptomatic infection</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolate</TAG>
        <VALUE>4085</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation_source</TAG>
        <VALUE>nasopharyngeal swab</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection_method</TAG>
        <VALUE>swab</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>exposure_event</TAG>
        <VALUE>Health care associated cluster</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_exposure</TAG>
        <VALUE>Colombia: Manizales</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>gisaid_accession</TAG>
        <VALUE>EPI_ISL_5239243</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_age</TAG>
        <VALUE>23</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_anatomical_part</TAG>
        <VALUE>nasopharynx</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_disease_outcome</TAG>
        <VALUE>Recovery</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_health_state</TAG>
        <VALUE>Healthy, no comorbidities</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_recent_travel_loc</TAG>
        <VALUE>None</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_sex</TAG>
        <VALUE>female</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_subject_id</TAG>
        <VALUE>14-04-21-4085</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>lat_lon</TAG>
        <VALUE>5.0661 N 75.4847 W</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>purpose_of_sampling</TAG>
        <VALUE>Contact tracing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>purpose_of_sequencing</TAG>
        <VALUE>Asymptomatic case linked to possible early reinfection by other SARS-CoV-2 Variant</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_gene_name_1</TAG>
        <VALUE>E (orf4)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_gene_name_2</TAG>
        <VALUE>N (orf9)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_pcr_ct_value_1</TAG>
        <VALUE>22</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_pcr_ct_value_2</TAG>
        <VALUE>23</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequenced_by</TAG>
        <VALUE>Instituto Nacional de Salud</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>vaccine_received</TAG>
        <VALUE>Pfizer-BioNTech</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>BioSampleModel</TAG>
        <VALUE>SARS-CoV-2: clinical or host-associated</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
  <SAMPLE alias="2021-06-MLZ-Barcode92_8272" accession="SRS10644715">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS10644715</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN22416228</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>Barcode92_MLZ-RI-2ND-GM</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>2697049</TAXON_ID>
      <SCIENTIFIC_NAME>Severe acute respiratory syndrome coronavirus 2</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>Second symptomatic SARS-CoV-2 Infection by Gamma VOC after first infection in april with Mu VOI</DESCRIPTION>
    <SAMPLE_LINKS>
      <SAMPLE_LINK>
        <XREF_LINK>
          <DB>bioproject</DB>
          <ID>772763</ID>
          <LABEL>PRJNA772763</LABEL>
        </XREF_LINK>
      </SAMPLE_LINK>
    </SAMPLE_LINKS>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>collected_by</TAG>
        <VALUE>Laboratorio Salud Pblica de Caldas (DTSC)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection_date</TAG>
        <VALUE>2021-06-09</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_name</TAG>
        <VALUE>Colombia: Manizales</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host</TAG>
        <VALUE>Homo sapiens</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_disease</TAG>
        <VALUE>COVID-19 mild disease</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolate</TAG>
        <VALUE>8272</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation_source</TAG>
        <VALUE>nasopharyngeal swab</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection_method</TAG>
        <VALUE>swab</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>date_of_prior_sars_cov_2_infection</TAG>
        <VALUE>2021-27-04</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>date_of_sars_cov_2_vaccination</TAG>
        <VALUE>2021-04-16</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>exposure_event</TAG>
        <VALUE>Health care associated cluster</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_exposure</TAG>
        <VALUE>Colombia: Manizales</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>gisaid_accession</TAG>
        <VALUE>EPI_ISL_5239242</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_age</TAG>
        <VALUE>35</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_anatomical_part</TAG>
        <VALUE>nasopharynx</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_disease_outcome</TAG>
        <VALUE>Recovery</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_health_state</TAG>
        <VALUE>Healthy, no comorbidities</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_recent_travel_loc</TAG>
        <VALUE>None</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_sex</TAG>
        <VALUE>male</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_subject_id</TAG>
        <VALUE>09-06-21-8272</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>lat_lon</TAG>
        <VALUE>5.0661 N 75.4847 W</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>prior_sars_cov_2_infection</TAG>
        <VALUE>yes</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>purpose_of_sampling</TAG>
        <VALUE>Diagnostic testing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>purpose_of_sequencing</TAG>
        <VALUE>Suspicion of early reinfection by other SARS-CoV-2 Variant</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_gene_name_1</TAG>
        <VALUE>E (orf4)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_gene_name_2</TAG>
        <VALUE>N (orf9)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_pcr_ct_value_1</TAG>
        <VALUE>16</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sars_cov_2_diag_pcr_ct_value_2</TAG>
        <VALUE>16</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequenced_by</TAG>
        <VALUE>Instituto Nacional de Salud</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>vaccine_received</TAG>
        <VALUE>Pfizer-BioNTech</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>virus_isolate_of_prior_infection</TAG>
        <VALUE>SARS-CoV-2/human/COL/MLZ-CAL-25-04/2020</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>BioSampleModel</TAG>
        <VALUE>SARS-CoV-2: clinical or host-associated</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
