SRS10714186 SAMN22558095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095268/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.913721 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.836624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.531693 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714185 SAMN22559199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095266/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.096876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.14188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.403006 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714177 SAMN22559002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095255/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.865315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 6.892571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 6.257877 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714176 SAMN22558043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095258/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.540356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.248716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.180338 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714175 SAMN22557774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210095256/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.786977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.266344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.741284 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714174 SAMN22557573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095254/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.677736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.31505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.400482 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714169 SAMN22560070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210094790/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.4841585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.535867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.110133 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714170 SAMN22557366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094789/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.512169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.82531 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.479343 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714171 SAMN22557181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094791/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.438251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.885275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.910812 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714172 SAMN22558098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095252/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.599543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.604418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.273657 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714173 SAMN22558097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095253/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.819971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.232581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.464888 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714187 SAMN22558974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095267/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.484848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.240374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.13371 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714188 SAMN22558973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095269/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.451244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.263577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.266443 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714189 SAMN22558972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095270/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.416845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.588642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.34281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714190 SAMN22559001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095271/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.408958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.826911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.22898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714191 SAMN22559250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210095273/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.419243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.38427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.679406 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714192 SAMN22558971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095272/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.370348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.215601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.871965 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714193 SAMN22558302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095274/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.298712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.214853 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714178 SAMN22557923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095259/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.412338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.593451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.526166 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714179 SAMN22557443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210095260/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.436705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.174915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.5644655 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714180 SAMN22560058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095261/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.956886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.405948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.196444 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714181 SAMN22557572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095262/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.59273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.762472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.572746 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714182 SAMN22557571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095263/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.049515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.992384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.668789 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714183 SAMN22557425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095264/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.735969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.210474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.546863 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714184 SAMN22558096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095265/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.150816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.826815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.825829 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714194 SAMN22558042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095275/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.357986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.355679 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.890497 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714195 SAMN22558247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095276/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.492688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.980337 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.932531 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714196 SAMN22558246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095277/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.730587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.373655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.812311 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714197 SAMN22558245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095278/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.266457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.834085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.281576 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714198 SAMN22560002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095279/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.413155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.343567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.341875 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714199 SAMN22558924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095280/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.004784 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.918894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.699788 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714200 SAMN22560001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095282/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.183657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.985231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.64171 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714201 SAMN22558923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095281/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.498651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.544852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.669197 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714202 SAMN22558191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095283/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.554808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.880365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.667248 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714203 SAMN22559000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095284/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.60987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.571974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.304144 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714205 SAMN22558161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319438/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.956371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.729435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.365499 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714206 SAMN22557865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210319440/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.225538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.651048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.834658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714207 SAMN22557109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319441/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.904562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.789368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.51736 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714208 SAMN22557108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319442/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.404516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.491304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.25197 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714209 SAMN22557107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319443/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.315615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.25015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.229042 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714210 SAMN22557864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210319452/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.924631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.410883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.380535 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714211 SAMN22557533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210319451/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.702684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.448141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.30568 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714204 SAMN22559062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210319439/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.999248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.811601 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.612279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714212 SAMN22556882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210319447/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.953806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.782606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.414635 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714213 SAMN22556883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210319445/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.775211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.13325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.52886 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714214 SAMN22559907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210319454/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.49341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.477207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.56326 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714215 SAMN22559906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210319455/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.891623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.743754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.781664 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714216 SAMN22559994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210319456/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.285717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.353859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.769205 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714217 SAMN22558348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210319457/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.879274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.848827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.850998 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714218 SAMN22557406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210319461/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.038313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.789824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.850263 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714219 SAMN22558379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210319460/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.117556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.562847 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.033718 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714220 SAMN22558160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319458/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.777002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.125746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.50627 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714221 SAMN22557106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319459/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.107536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.577124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.186043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714222 SAMN22559993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210319464/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.924639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.120536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.238897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714223 SAMN22557105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319463/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.271729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.250853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.63412 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714224 SAMN22557532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210319465/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.178895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.912463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.282705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714225 SAMN22559244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210319466/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.146868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.962297 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.273645 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714226 SAMN22558882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210319467/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.467422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.220984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.305475 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714227 SAMN22557104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319468/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.800016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.888853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.641515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714228 SAMN22557405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210319469/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.148543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.666715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.87227 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714229 SAMN22559992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210319471/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.171799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.851416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.741765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714230 SAMN22558159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319472/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.250729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.678119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.350876 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714231 SAMN22558158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319473/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.852955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.734671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.550275 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714232 SAMN22557404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210319475/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.709301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.246223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.1466 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714233 SAMN22559243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210319478/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.342125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.693995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.431458 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714234 SAMN22559905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210319477/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.940075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.341228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.249395 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714235 SAMN22559174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335798/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.506157 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.712689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.191414 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714236 SAMN22559173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335799/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.516074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.71632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.540876 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714237 SAMN22559991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210319479/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.836859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.652767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.818811 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714238 SAMN22557640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335801/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.625519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.296653 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.862957 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714239 SAMN22557641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335800/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.186977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.490993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.805509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714240 SAMN22557638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335803/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.481976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.503546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.21403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714241 SAMN22557639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335802/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.392256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.55136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.223902 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714242 SAMN22557637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335804/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.222466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.993076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.888449 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714243 SAMN22558398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335805/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.332085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.63105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.33204 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714244 SAMN22558289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335807/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.142841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.322027 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.994322 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714245 SAMN22558397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335806/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.577652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.88265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.679358 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714246 SAMN22558344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335808/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.501114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.598322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.435732 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714247 SAMN22558343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335809/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.18614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.828059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.274583 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714248 SAMN22558002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210335810/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.55885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.512426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.95114 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714249 SAMN22558001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210335811/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.097307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.709818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.53901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714250 SAMN22557449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335812/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.225183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.703123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.56317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714251 SAMN22557436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210335815/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.009281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.605273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.93701 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714253 SAMN22557075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335816/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.255402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.643383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.193573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714254 SAMN22558395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335821/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.09432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.352589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.832823 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714255 SAMN22558396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335820/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.938625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.362053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.743984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714256 SAMN22559898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335823/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.307964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.65846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.020971 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714257 SAMN22557448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335824/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.964941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.892162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.856813 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714258 SAMN22557074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335822/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.287288 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.432197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.381696 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714279 SAMN22556794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210374589/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.252705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.289306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.962277 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714252 SAMN22557437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210335814/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.619197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.195718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.983676 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714259 SAMN22557636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335825/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.88257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.97586 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.536715 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714260 SAMN22557709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335828/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.208838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.148766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.818551 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714261 SAMN22557073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335826/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.950052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.492764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.592783 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714262 SAMN22557708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335829/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.298162 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.735703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.340961 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714263 SAMN22559237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210335830/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.603266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.615033 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.570186 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714264 SAMN22558235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210335838/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.381276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.702706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.184512 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714265 SAMN22558234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210335839/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.989553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.962952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.078771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714266 SAMN22557966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210335840/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.893393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.011484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.788715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714267 SAMN22557519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335841/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.725029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.559658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.456438 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714268 SAMN22557769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374477/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.188152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.890373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.278782 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714269 SAMN22557767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374479/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.297024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.416986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.36518 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714270 SAMN22557766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374480/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.801673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.81119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.744633 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714271 SAMN22557765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374481/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.759357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.337488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.177511 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714272 SAMN22557768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374478/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.472971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.687824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.188839 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714273 SAMN22557764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374485/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.475242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.164598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.591798 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714274 SAMN22557763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210374486/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.665534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.378174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.868382 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714275 SAMN22559154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210374487/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.840314 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.307208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.837813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714276 SAMN22557853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210374488/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.190527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.396616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.69821 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714277 SAMN22557852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210374490/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.153362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.181682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.490215 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714278 SAMN22557058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210374492/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.339718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.916485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.838116 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714280 SAMN22560035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210374803/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.280865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.716269 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.767174 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714281 SAMN22559153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210374493/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.387952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.870368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.714911 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714282 SAMN22557304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210374804/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.879661 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.262031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.400355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714283 SAMN22558131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210374807/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.82795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.279984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.59518 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714284 SAMN22559892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210374809/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.972305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.255733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.759416 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714285 SAMN22557303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210374810/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.768045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.388457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.207701 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714286 SAMN22557965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210374811/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.702456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.93801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.995654 lineage/clade name AY.7.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714287 SAMN22558130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210374812/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.862999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.54422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.24896 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714288 SAMN22557999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210374813/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.907019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.940147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.171526 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714289 SAMN22557701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375472/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.510114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.864489 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.176405 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714290 SAMN22559151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375474/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.492824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.384155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.446161 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714291 SAMN22558872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375476/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.20516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.848387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.214705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714292 SAMN22559152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375377/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.520607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.547878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.330578 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714293 SAMN22558275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375473/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.48125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.98948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.637732 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714294 SAMN22557634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210375477/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.877626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.404913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.471167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714295 SAMN22558061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375478/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.150564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.424946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.738967 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714296 SAMN22558060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375479/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.015584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.550335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.827642 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714297 SAMN22557633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210375480/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.274063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.18969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.016655 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714298 SAMN22558059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375481/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.713028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.265764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.486828 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714299 SAMN22557630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210375645/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.630226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.50187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.150122 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714300 SAMN22558122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375647/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.843913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.909898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.582284 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714301 SAMN22558870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375648/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.645433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.927652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.633871 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714302 SAMN22557511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375492/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.826183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.943161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.568367 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714303 SAMN22557693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375646/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.928977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.2666235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5183 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714304 SAMN22558869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375649/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.589907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.712425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.573936 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714305 SAMN22558868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375650/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.790685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.583509 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.333538 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714306 SAMN22558867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375651/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.845689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.135286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.826543 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714307 SAMN22557996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375652/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.364141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.488459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.122465 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714308 SAMN22558338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375653/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.752905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.798546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.841143 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714309 SAMN22558337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375654/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.578106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.54554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.380648 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714310 SAMN22558334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375657/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.870709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.784966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.45737 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714311 SAMN22558336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375655/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.638649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.660934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.704557 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714312 SAMN22558335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375656/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.921096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.343497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.518052 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714313 SAMN22558333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375658/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.951084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.351674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.642917 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714314 SAMN22557995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375659/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.694412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.942635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.45682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714315 SAMN22557994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375660/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.986402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.871522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.95349 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714316 SAMN22557993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375661/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.28211 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.99106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.349865 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714317 SAMN22557992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375663/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.62122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.792588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.367215 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714318 SAMN22557991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375664/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.161385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.801893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.297101 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714319 SAMN22556868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375665/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.972734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.447853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.309786 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714320 SAMN22556867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375666/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.125813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.268133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.909597 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714321 SAMN22556866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375667/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.39685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.597738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.582684 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714322 SAMN22559136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375669/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.13489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.809174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.248297 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714323 SAMN22559135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375672/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.783237 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.79582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.551085 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714324 SAMN22559026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210375670/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.0204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.834078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.162252 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714325 SAMN22559133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375674/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.576921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.967646 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.514635 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714326 SAMN22559134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375673/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.784864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.061243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.189014 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714327 SAMN22559132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375675/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.295258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.442387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.709246 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714328 SAMN22559131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375676/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.631453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.010439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.585127 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714329 SAMN22559130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375677/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.552176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.004738 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.972527 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714330 SAMN22559129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375678/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.803107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.297008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.504221 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714331 SAMN22556841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380069/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.828024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.674857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.347569 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714332 SAMN22556840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380071/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.600126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.500284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.238972 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714333 SAMN22559128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375680/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.628904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.569248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.369917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714334 SAMN22558224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380070/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.389486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.568447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.396631 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714335 SAMN22556839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380072/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.000044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.681366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.018932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714336 SAMN22558223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380073/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.48145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.6181135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.503982 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714337 SAMN22556838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380074/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.955227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.216257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.970573 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714338 SAMN22557035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380075/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.537191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.276304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.256775 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714339 SAMN22557034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380077/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.286422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.254044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.271186 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714340 SAMN22557033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380078/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.31112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.051046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.12845 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714341 SAMN22557032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380079/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.263412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.859907 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714342 SAMN22558222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380076/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.24832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.241686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.918314 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714343 SAMN22557031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380081/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.227646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.775341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.387516 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714344 SAMN22558221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380080/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.609422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.585371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.762219 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714345 SAMN22557030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380082/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.552927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.170244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.504164 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714346 SAMN22557029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380083/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.2154455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.910695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.362527 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714347 SAMN22557028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380084/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.022778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.831312 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.372671 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714348 SAMN22557027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380085/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.620478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.811386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.563786 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714350 SAMN22557756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210380090/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.757368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.626385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.218887 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714351 SAMN22557491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380089/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.516888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.750126 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.827692 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714352 SAMN22557755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210380091/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.005114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.115215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.797733 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714353 SAMN22557980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380093/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.487401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.257985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.553656 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714354 SAMN22557979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380094/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.961184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.725342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.89338 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714355 SAMN22557754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210380096/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.620737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.955881 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.496925 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714349 SAMN22558220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380088/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.453918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.969614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.801405 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714356 SAMN22557753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210380097/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.234545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.495002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.205841 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714357 SAMN22559228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380095/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.917034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.5751 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.676367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714358 SAMN22557026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380098/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.905125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.22296 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.557703 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714359 SAMN22557490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380099/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.698908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.84046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.484573 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714360 SAMN22557489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380100/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.6624975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.132433 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.245633 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714361 SAMN22557488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380102/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.31451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.551228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.76734 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714362 SAMN22557487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380103/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.246891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.970377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.50077 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714363 SAMN22560069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210094792/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.353846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.820362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.030767 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714364 SAMN22557595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094795/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.107485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.553858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.14835 lineage/clade name AY.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714365 SAMN22560068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210094797/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.991735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.149025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.67386 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714366 SAMN22558103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210094796/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.7828455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.1863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.519169 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714367 SAMN22558102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210094798/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.342064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.385193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.2578 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714368 SAMN22557594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094800/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.952636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.235201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.680262 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714369 SAMN22557593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094801/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.400023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.364934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.173439 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714370 SAMN22556825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094803/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.81652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.656265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.065283 lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714371 SAMN22556824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094805/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.40447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.18878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.977707 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714372 SAMN22557592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094802/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.401096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.7043915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.213827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714373 SAMN22556823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094815/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.175813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.518866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.998862 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714374 SAMN22559227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380101/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.256263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.284328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.5442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714375 SAMN22558203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094816/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.5038595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.975081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.447438 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714376 SAMN22558202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094821/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.318682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.530903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.475567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714377 SAMN22556822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094822/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.45655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.737549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.268888 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714378 SAMN22557591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094827/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.143322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.592403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.519342 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714379 SAMN22558937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094885/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.414648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.55869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.080706 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714380 SAMN22558936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094886/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.027903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.774088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.276634 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714381 SAMN22557648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210094887/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.700323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.486605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.765137 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714382 SAMN22557730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094888/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.13152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.979364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.66348 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714383 SAMN22559858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094889/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.798708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.836674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.670832 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714384 SAMN22557466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210094890/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.60454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.230234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.970459 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714385 SAMN22556951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094892/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.854206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.575556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.152622 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714386 SAMN22557729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094891/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.358112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.885462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.732567 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714387 SAMN22559090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094894/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.422625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.985273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.432747 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714388 SAMN22559857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094893/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.2146435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.002416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.456911 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714389 SAMN22556950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094895/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.756721 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.029045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.432117 lineage/clade name B.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714390 SAMN22559253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094897/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.856503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.03439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.745695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714391 SAMN22556948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094898/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.561392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.122555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.883825 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714392 SAMN22556949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094896/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.315874 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.463064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.262428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714393 SAMN22556947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094899/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.480084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.278584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.640063 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714394 SAMN22559959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094900/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.266638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.558622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.213066 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714395 SAMN22559958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094901/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.182386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.246109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.02948 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714396 SAMN22559990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210319480/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.167389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.898565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 7.7847686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714397 SAMN22557103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319482/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.91513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.899858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.436807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714398 SAMN22558157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319483/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.420078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.955635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.28975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714399 SAMN22558881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210319481/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.482197 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.380129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.82788 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714400 SAMN22557102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319485/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.535023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.485764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.175444 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714401 SAMN22559186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210319489/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.161363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.423065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.870695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714402 SAMN22560039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210319487/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.916876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.3595495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.627915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714403 SAMN22558880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210319490/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.972598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.275941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.937182 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714404 SAMN22559242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210319492/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.347692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.856693 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.687508 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714405 SAMN22558408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210319496/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.374397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.638783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.909493 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714406 SAMN22558156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319498/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.983174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.721457 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.599148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714407 SAMN22559241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210319495/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.119555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.82955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.673233 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714408 SAMN22558011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210319500/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.853115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.80553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.532089 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714409 SAMN22557531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210319501/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.57083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.192211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.794773 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714410 SAMN22558012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210319499/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.194126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.080046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.503483 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714411 SAMN22558879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210319502/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.102167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.96581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.50329 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714412 SAMN22558878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210319505/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.83088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.32616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.923502 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714413 SAMN22558155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319504/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.391939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.771122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.46321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714414 SAMN22558010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210319506/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.82095 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.431765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.894994 lineage/clade name AY.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714415 SAMN22557530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210319509/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.773839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.774873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.174291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714416 SAMN22558009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210319508/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.290792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.91951 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.637724 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714417 SAMN22557529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210319510/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.21327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.53699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.187841 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714418 SAMN22558378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210319511/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.296457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.307398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.758847 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714419 SAMN22558008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210319516/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.865854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.385511 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.79503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714420 SAMN22557101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210319515/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.371955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.341685 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.931607 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714421 SAMN22558377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210319513/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.158623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.46971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.355705 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714422 SAMN22557528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210319514/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.64115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.4911995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.56776 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714423 SAMN22558407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210319517/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.435846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.69343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.85178 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714424 SAMN22557459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210334189/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.116956 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.676909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.043044 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714425 SAMN22558995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210334542/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.751429 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.481285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.882578 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714426 SAMN22560038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210334540/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.688356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.556953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.821583 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714427 SAMN22560037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210334541/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.149101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.782736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.339352 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714428 SAMN22559038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335842/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.397997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.910019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.663275 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714429 SAMN22556972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VT-CDC-ASC210335843/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.20533 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.607936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.157713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714430 SAMN22556877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335845/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.104396 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.980737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.142048 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714431 SAMN22556878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335844/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.965111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.41726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.086986 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714432 SAMN22557447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335848/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.060343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.439692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.382544 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714433 SAMN22556876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335846/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.220367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.243263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.733362 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714434 SAMN22558074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335849/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.40481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.299652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.790075 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714435 SAMN22558073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335850/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.787508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.936913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.435425 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714436 SAMN22558072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335851/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.860236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.544119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.9850855 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714437 SAMN22558288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335852/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.182677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.572383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.39037 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714438 SAMN22558233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210335853/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.32604 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.828356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.668432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714439 SAMN22559172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335856/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.40455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.14091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.276243 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714440 SAMN22556975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210335857/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.566803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.947094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.7072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714441 SAMN22557071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335859/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.62905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.46836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.539629 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714442 SAMN22557072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335858/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.034416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.950729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.833875 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714443 SAMN22557518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335860/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.448816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.895908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.272388 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714444 SAMN22557318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335862/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.84423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.734705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.404066 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714445 SAMN22557517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335861/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.183625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.789899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.846974 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714446 SAMN22557317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335863/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.551321 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.0404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.709505 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714447 SAMN22557316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335864/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.913948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.219687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.844248 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714448 SAMN22558071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335866/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.599207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.76332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.336077 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714449 SAMN22558287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335867/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.660506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.66647 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.321228 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714450 SAMN22558286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335868/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.675472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.465013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.618965 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714451 SAMN22556795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210335872/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.655517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.114534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.509567 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714452 SAMN22558394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335871/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.232573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.788868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.563705 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714453 SAMN22557315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335873/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.645138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.795918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.448979 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714454 SAMN22559897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335870/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.097765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.47667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.720238 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714455 SAMN22557314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335874/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.78146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.027145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.638123 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714456 SAMN22557313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335875/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.261524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.832127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.464456 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714457 SAMN22557312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335877/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.738907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.64877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.902304 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714458 SAMN22557311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335878/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.809168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.452814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.807446 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714459 SAMN22557516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335879/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.867941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.715714 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.82179 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714460 SAMN22559028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210375518/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.813554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.781778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.752137 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714461 SAMN22559027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210375519/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.488106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.45379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.516043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714462 SAMN22559150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375578/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.421789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.474537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.924063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714463 SAMN22557509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375580/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.306406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.283232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.009705 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714464 SAMN22557510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375579/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.630353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.711195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.408193 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714465 SAMN22557507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375583/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.897411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.941448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.848274 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714466 SAMN22557508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375582/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.823696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.187849 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.739355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714467 SAMN22558340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375581/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.718761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.448385 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.413826 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714468 SAMN22557506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375584/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.786257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.939411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.546589 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714469 SAMN22557505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375585/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.080294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.90375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.281487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714470 SAMN22557998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375586/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.30334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.59623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.84959 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714471 SAMN22558389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210375588/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.969229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.207783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.643778 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714472 SAMN22557997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210375587/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.672476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.147758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4182825 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714473 SAMN22559978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210375589/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.863379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.70637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.51035 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714474 SAMN22559977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210375591/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.624302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.770853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.565702 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714475 SAMN22559976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210375592/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.083466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.664326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.930033 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714476 SAMN22559975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210375593/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.333332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.426805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.37894 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714477 SAMN22559974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210375594/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.002053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.662727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.596618 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714478 SAMN22557503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375596/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.381834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.802956 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.30349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714479 SAMN22557504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375595/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.803066 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.419662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.63507 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714480 SAMN22557502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375597/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.429686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.657635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.509378 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714481 SAMN22557501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375598/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.516678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.181875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.657435 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714482 SAMN22559149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375599/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.238231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.184188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.927148 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714483 SAMN22559148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375600/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.234789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.131596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.98092 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714484 SAMN22559147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375601/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.728335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.862827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.527821 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714485 SAMN22559146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375602/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.202408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.555517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.689459 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714486 SAMN22559145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375603/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.252598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.500957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.949783 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714487 SAMN22559144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375605/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.214558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.610823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.74344 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714488 SAMN22559143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375606/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.300682 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.584787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.474138 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714489 SAMN22559142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375607/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.958773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.709938 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.278358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714490 SAMN22559890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375609/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.099726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.905905 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.3577 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714491 SAMN22557851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210375681/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.742268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.606007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.699617 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714492 SAMN22557850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210375682/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.683858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.680294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.316663 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714493 SAMN22559127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375683/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.501167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.391792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.206062 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714494 SAMN22559891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375608/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.501905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.614061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.545734 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714495 SAMN22559126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375684/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.9153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.550018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.1552 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714496 SAMN22557692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375685/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.927135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.29475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.120277 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714497 SAMN22558273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375686/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.501743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.802288 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.030735 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714498 SAMN22558272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375687/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.573673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.63203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.9121 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714499 SAMN22557691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375688/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.673819 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.259523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.006903 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714500 SAMN22557690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375689/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.800999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.185535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.1621 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714501 SAMN22559125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375690/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.827816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.360182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.947296 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714502 SAMN22559124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375691/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.406351 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.303024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.548683 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714503 SAMN22558866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375693/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.056965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.696154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.15472 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714504 SAMN22558388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210375694/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.657047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.990395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.446377 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714505 SAMN22559922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095851/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.729172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.182955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.929615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714506 SAMN22558911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095791/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.644428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.639807 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.967167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714507 SAMN22557894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095879/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.885508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.543744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.240277 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714508 SAMN22558077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335730/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.944126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.984864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5080595 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714509 SAMN22558076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335731/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.558061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.640398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.380714 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714510 SAMN22557710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335732/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.895418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.408968 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714511 SAMN22557642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335734/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.734897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.654596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.997354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714512 SAMN22557643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335733/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.467369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.963573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.657696 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714513 SAMN22558402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335735/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.446646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.687199 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.1828 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714514 SAMN22556879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335736/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.7276125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.426233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.837211 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714515 SAMN22558293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335738/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.362762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.1727295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.752973 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714516 SAMN22559047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335737/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.792667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.933615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.418852 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714517 SAMN22558292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335739/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.827845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.255307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.830918 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714518 SAMN22557772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210335742/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.631838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.521652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.189894 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714519 SAMN22558291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335740/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.470802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.516758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.291697 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714520 SAMN22557771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210335744/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.025858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.403648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.050346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714521 SAMN22558993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210335743/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.62489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.447273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.765713 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714522 SAMN22559901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335745/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.661028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.01047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.751534 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714523 SAMN22558290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335747/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.341846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.981249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.06532 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714524 SAMN22558236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210335746/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.735868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.411715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.868437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714525 SAMN22559045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335749/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.453888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.481915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.801731 lineage/clade name P.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714526 SAMN22559046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335748/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.481691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.191177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.80326 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714527 SAMN22559986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335750/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.5585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.547695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.236353 lineage/clade name B.1.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714528 SAMN22560011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210335752/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.42412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.279518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.095346 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714529 SAMN22559985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335751/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.5946875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.549783 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.1153555 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714530 SAMN22558968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335753/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.27926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.298063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.313843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714531 SAMN22558967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335754/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.187176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.369911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.618277 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714532 SAMN22558966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335755/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.859113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.858403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.790843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714533 SAMN22558965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335756/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.291748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.040949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.706326 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714534 SAMN22558964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335757/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.454156 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.175687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.841971 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714535 SAMN22558963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335758/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.815529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.717371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.98961 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714536 SAMN22559181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335759/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.480907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.167257 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.272635 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714537 SAMN22558075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335760/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.21859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.540676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.826685 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714538 SAMN22557392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210335761/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.590834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.261795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.606031 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714539 SAMN22557319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335762/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.380991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.91154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.971003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714540 SAMN22557893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095880/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.353128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.360538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.680243 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714542 SAMN22557892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095881/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.802405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.963232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.686693 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714543 SAMN22557890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095883/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.765125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.437008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.17987 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714545 SAMN22559193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095885/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.691269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.906301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.90893 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714546 SAMN22557416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095886/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.288832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.715553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.30567 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714547 SAMN22557479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210095888/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.155523 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.689575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.439537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714548 SAMN22558019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095889/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.313071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.275603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.977087 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714541 SAMN22557891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095882/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.44446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.990603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4826355 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714544 SAMN22559194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095884/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.377924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.35765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.845839 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714549 SAMN22556902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095890/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.764668 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.525276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.838554 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714550 SAMN22557415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095887/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.109413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.673642 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.5864 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714551 SAMN22556901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095891/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.329042 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.512705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.906557 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714552 SAMN22556900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095892/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.621393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.2266 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.574535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714553 SAMN22557646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210095893/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.922323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.958164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.825062 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714554 SAMN22558910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095894/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.249732 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.3580265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.6325445 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714555 SAMN22557003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210095895/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.765749 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.679948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.14896 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714556 SAMN22557002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210095896/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.882046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.23065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.823967 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714557 SAMN22557001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210095897/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.530096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.602463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.959892 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714558 SAMN22557000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210095898/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.676439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.277709 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.02391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714559 SAMN22557556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095899/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.59172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.840132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.026243 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714560 SAMN22557554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095901/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.53601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.229094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.608671 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714561 SAMN22557555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095900/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.487213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.318272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.770153 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714562 SAMN22557553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095902/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.136955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.265066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.630174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714563 SAMN22557552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095903/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.909352 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.529958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.372516 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714564 SAMN22558416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095904/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.825116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.887293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.585318 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714565 SAMN22557645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210095905/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.277489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.650558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.168192 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714566 SAMN22557477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210095907/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.726578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.334551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.985705 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714567 SAMN22557478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210095906/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.215733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.742096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.160782 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714568 SAMN22557414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095908/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.553715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.281582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.350931 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714569 SAMN22557413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095909/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.397938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.84193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9251585 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714570 SAMN22557142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095912/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.72035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.831694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.317337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714571 SAMN22557667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210095910/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.550416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.453781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.302279 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714572 SAMN22557143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095911/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.711601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.517793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.809483 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714573 SAMN22557141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095913/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.3655615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.824091 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.531962 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714574 SAMN22557140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095914/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.86387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.487354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.644342 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714575 SAMN22557139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095915/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9191065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.141802 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.542765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714576 SAMN22557138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095916/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.453758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.211111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.974812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714577 SAMN22559921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095917/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.96644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.208803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.766317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714578 SAMN22559920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095918/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.40315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.263765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.613707 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714579 SAMN22559919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095919/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.006926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.526196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.66007 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714580 SAMN22558354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210316801/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.197649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.90911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.670607 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714581 SAMN22556978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316805/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.889055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.840841 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.394249 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714582 SAMN22557889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316806/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.556522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.255383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.56623 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714583 SAMN22557888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316807/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.31272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.486727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.571463 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714584 SAMN22557887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316808/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.936068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.866302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.635279 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714585 SAMN22557886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316809/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.656027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.6462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.690295 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714586 SAMN22557324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316829/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.723934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.951497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.515346 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714587 SAMN22557325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210316828/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.781601 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.990818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.703521 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714588 SAMN22557412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210316864/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.966435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.505013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.642685 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714589 SAMN22557749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210316868/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.922619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.993697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.312992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714590 SAMN22556977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316989/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.375626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.41638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.509247 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714591 SAMN22556976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210316990/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.685656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.33375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.852001 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714592 SAMN22557137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210316993/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7108927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.600834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.2432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714593 SAMN22557885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316994/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.803835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.366852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.695621 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714594 SAMN22557884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316995/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.414707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.637419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.354864 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714595 SAMN22557883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316996/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.843477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.678123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.300013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714596 SAMN22557882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316997/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.927052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.850225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.373804 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714597 SAMN22557881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210316998/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.772777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.543188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.057148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714598 SAMN22557136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210316999/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.202478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.38958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.933332 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714599 SAMN22557134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317001/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.356855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.014921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.449055 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714600 SAMN22557135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317000/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.082655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.746279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.90708 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714601 SAMN22557133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317002/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.8439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.949957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.491987 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714602 SAMN22557132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317003/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.695677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.951232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.113812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714603 SAMN22557131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317004/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.730848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.452635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.420536 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714604 SAMN22559116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376561/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.094534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.685558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.968771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714605 SAMN22559117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376560/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.882627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.490025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.1305 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714606 SAMN22558260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376562/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.577583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.259452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.303882 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714607 SAMN22558849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376563/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.583147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.871765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.776097 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714608 SAMN22558114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210379387/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.959713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.4133835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.264561 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714609 SAMN22558052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210379389/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.897446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.941991 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.638737 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714610 SAMN22556849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210379388/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.263481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.509093 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.810954 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714611 SAMN22559115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210379390/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.252139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.967868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.423902 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714612 SAMN22559114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210379391/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.296537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.886437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.607685 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714613 SAMN22556974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210379392/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.700676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.579449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.233805 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714614 SAMN22558374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210379393/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.289737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.101331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.115262 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714615 SAMN22556973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210379394/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.883623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.918402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.513302 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714616 SAMN22560019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210379395/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.927423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.358883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.82726 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714617 SAMN22560018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210379396/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.351054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.385514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.718232 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714618 SAMN22560017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210379398/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.615963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.679003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.192745 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714619 SAMN22560016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210379399/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.900753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 37.753227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.647152 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714620 SAMN22557283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379401/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.770161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.623424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.972415 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714621 SAMN22557282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379402/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.930748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.467941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.545866 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714622 SAMN22557281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379403/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.606652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.749969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.236302 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714623 SAMN22557279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379405/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.271798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.907202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.177621 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714624 SAMN22557280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379404/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.348354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.58849 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.020947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714625 SAMN22557278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379406/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.600554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.217001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.921705 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714626 SAMN22557277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379407/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.504267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.364075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.322933 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714627 SAMN22557276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379408/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.319786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.571066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.350985 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714628 SAMN22557275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379409/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.164772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.75406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.56384 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714629 SAMN22557274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379410/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.515785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.398064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.338977 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714630 SAMN22557273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379411/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.914814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.274038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.004457 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714631 SAMN22557272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379412/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.871853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.165852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.657516 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714632 SAMN22557271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379413/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.5471735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.717051 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.903822 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714633 SAMN22557270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379414/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.328363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.67989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.14797 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714634 SAMN22557269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379415/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.523865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.919933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.496632 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714635 SAMN22557268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379416/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.373835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.842684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.816114 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714636 SAMN22557126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317269/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.684848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.713647 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.794703 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714637 SAMN22557125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317270/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.90046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.884556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.633297 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714638 SAMN22557124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317271/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.284335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.425172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.861887 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714639 SAMN22557548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317273/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.445494 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.882414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.391613 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714640 SAMN22560046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317276/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.47739 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.228576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.997841 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714641 SAMN22556896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317277/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.918451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.45656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.377743 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714642 SAMN22556895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317278/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.35096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.771418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.41625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714643 SAMN22556894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317279/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.546602 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.43788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.288134 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714644 SAMN22556893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317280/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.301131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.269689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.455815 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714645 SAMN22557438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210317281/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.59182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.2716255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.911647 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714646 SAMN22556892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317282/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.809306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9033985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.677831 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714647 SAMN22556891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317283/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.996754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.463099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.027277 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714648 SAMN22558905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317284/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.45918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.165857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.935587 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714649 SAMN22558904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317285/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.449861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.816114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.280367 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714650 SAMN22558903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317286/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.376331 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.701287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.872876 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714651 SAMN22558902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317287/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.338223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.309351 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.343507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714652 SAMN22558901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317288/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.801748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.380225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.535648 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714653 SAMN22557547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317289/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.321279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.822363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.487471 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714654 SAMN22557546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317290/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.307304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.903724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.212501 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714655 SAMN22558900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317291/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.773854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.878059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.629402 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714656 SAMN22557408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210317292/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.483024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.422848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.930182 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714657 SAMN22558016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210317293/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.755744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.917758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.626114 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714658 SAMN22558015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210317294/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.591959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.5861635 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.526804 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714659 SAMN22558014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210317295/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.564253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.240906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.784765 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714660 SAMN22558899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317296/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.197872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.467323 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714661 SAMN22558898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317297/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.825334 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.302148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.907293 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714662 SAMN22558897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317298/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.192667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.931122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.396729 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714663 SAMN22558896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317299/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.485508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.147641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.750644 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714664 SAMN22558895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317300/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.977159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.703226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.9199505 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714665 SAMN22560012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210317301/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.948142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.306517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.358013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714666 SAMN22557462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210317302/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.615885 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.183002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.786283 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714667 SAMN22557545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317303/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.776436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.948442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.532095 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714668 SAMN22557130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317005/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.507747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.5897875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.655141 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714669 SAMN22559918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317006/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.994356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.482214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.17916 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714670 SAMN22556803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317008/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.680785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.765749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.004826 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714671 SAMN22557551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317009/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.182808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.91778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.281239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714672 SAMN22556802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317010/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.33085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.566214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.312836 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714673 SAMN22557550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317011/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.651609 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.432639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.261262 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714674 SAMN22557549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317012/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.529137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.346952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.634684 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714675 SAMN22556801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317013/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.947305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.9946575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.723186 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714676 SAMN22556800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317014/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.150228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.195887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.676014 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714677 SAMN22556798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317016/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.971899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.857603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.113771 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714678 SAMN22557880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317017/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.969423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.401527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.370886 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714679 SAMN22556799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317015/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.702496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.776287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.069523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714680 SAMN22557879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317019/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.7539425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.740018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.277975 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714681 SAMN22557878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317020/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.902294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.498024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.39792 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714682 SAMN22557877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317021/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.70974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.725813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.341219 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714683 SAMN22557876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317022/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.794594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.134808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.635376 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714684 SAMN22557875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317023/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.819365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.478485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.92165 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714685 SAMN22557129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317024/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.600574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.378106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.567114 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714686 SAMN22557128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317025/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.68357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.669844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.99159 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714687 SAMN22557441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210317027/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.527372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.08467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.601212 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714688 SAMN22557440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210317028/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.32497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.243095 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.635786 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714689 SAMN22557439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210317029/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.541822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.404602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.886856 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714690 SAMN22560047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317123/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.2617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.99711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.555092 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714691 SAMN22557411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210317124/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.281137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.681313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.185352 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714692 SAMN22557748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210317126/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.276562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.587389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.562952 lineage/clade name C.37.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714693 SAMN22558242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210317127/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.643204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.325169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.34922 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714694 SAMN22556899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317128/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.318292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.802931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.739696 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714695 SAMN22558018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210317129/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.682526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.348986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.82252 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714696 SAMN22558182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317130/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.273823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.512375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.627879 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714697 SAMN22558415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317131/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.890224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.615248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.229439 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714698 SAMN22558414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317132/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.567583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.616014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.827997 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714699 SAMN22558181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317134/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.768917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.851303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.539202 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714700 SAMN22557267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379417/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.460714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 36.76016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.951233 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714701 SAMN22557266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379418/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.319294 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.463072 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.139502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714702 SAMN22557040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210379419/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.089916 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.101204 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.286331 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714703 SAMN22559875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210379420/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.447056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.733894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.59506 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714704 SAMN22559874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210379421/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.712727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.13522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.564787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714705 SAMN22559873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210379422/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.759573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.024874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.369916 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714706 SAMN22559872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210379423/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.258617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.327381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.385487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714707 SAMN22557039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210379425/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.845936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.404892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.669956 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714708 SAMN22559232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210379424/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.693493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.875673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.38918 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714709 SAMN22557844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210379426/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.452059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.206575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.861866 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714710 SAMN22557626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210379427/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.800132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.696884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.045675 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714711 SAMN22557625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210379428/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.572758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.581594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.920882 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714712 SAMN22559871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210379429/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.898209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.218254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.975328 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714713 SAMN22556996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210379430/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.644547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.148832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.044682 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714714 SAMN22556995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210379431/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.483625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.892467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.244698 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714715 SAMN22559113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210379433/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.603653 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.708455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.873507 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714716 SAMN22556971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WA-CDC-ASC210379432/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.000515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.123184 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714717 SAMN22557265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379435/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.698563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.824572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.17892 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714718 SAMN22557264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379437/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.308325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.436728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.616638 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714719 SAMN22557263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379438/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.680832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.899626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.721815 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714720 SAMN22557262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379439/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.460552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.627563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.626542 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714721 SAMN22557260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379441/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8114805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.788397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.217185 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714722 SAMN22559016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210379442/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.974743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.186663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.339152 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714723 SAMN22557261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379440/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.296068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.312086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.842552 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714724 SAMN22557259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379443/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.02849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.597212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.651264 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714725 SAMN22557258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379444/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.864563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.52944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.219933 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714726 SAMN22557256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379446/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.928336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.675741 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.876148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714727 SAMN22557257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379445/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.549385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.504795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.86913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714728 SAMN22557255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379447/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.31118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.553402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.718779 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714729 SAMN22557252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379450/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.00814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.196156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.483225 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714730 SAMN22557253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379449/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.388972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.140194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.776879 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714731 SAMN22558180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317135/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.786278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.247341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.587782 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714732 SAMN22557254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379448/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.7791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.800222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.660143 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714733 SAMN22558179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317136/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.608315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.934111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.416476 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714734 SAMN22558178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317137/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.730222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.810076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.664948 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714735 SAMN22558413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317138/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.664068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.635317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.744518 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714736 SAMN22558177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317139/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.598287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.702691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.584241 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714737 SAMN22558176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317142/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.202114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.908215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.09901 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714738 SAMN22558412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317143/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.715283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.118303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.175468 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714739 SAMN22558175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317144/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.841807 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.325154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.998973 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714740 SAMN22558411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317145/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.818493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.867416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.435703 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714741 SAMN22558410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317146/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.463318 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.745577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.049125 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714742 SAMN22558409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210317148/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.41465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.337711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.8614235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714743 SAMN22558017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210317149/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.931318 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.002888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.41032 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714744 SAMN22558353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210317150/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.4587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.855661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.536825 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714745 SAMN22558352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210317151/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.135704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.976002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.74162 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714746 SAMN22559069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317153/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.922768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.272573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.462921 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714747 SAMN22558351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210317152/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.998575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.868991 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.087124 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714748 SAMN22559068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317155/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.290531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.708164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.064486 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714749 SAMN22559067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317156/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.611227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.607275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.31461 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714750 SAMN22558909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317157/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.550144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.201532 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.567797 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714751 SAMN22558907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317159/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.398637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.842434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.286388 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714752 SAMN22558908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317158/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.67639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.854914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.574997 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714753 SAMN22558906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317160/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.298521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.687817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.890991 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714754 SAMN22557410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210317161/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.262414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.963706 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.68211 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714755 SAMN22557409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210317163/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.736927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.573524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.214754 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714756 SAMN22557968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210317260/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.804703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.34757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.928897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714757 SAMN22557127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317262/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.16482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.679644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.116066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714758 SAMN22557874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317263/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.226374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.276691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.352789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714759 SAMN22556898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317264/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.659875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.961427 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.495861 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714760 SAMN22556897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317265/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.887249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.458488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.322268 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714761 SAMN22557721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317266/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.395274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.520966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.965421 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714762 SAMN22558350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210317267/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.685856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.735708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.633848 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714763 SAMN22558349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210317268/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.178372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.46547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.9056835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714764 SAMN22557652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210091510/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.222017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.825004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.260403 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714765 SAMN22557651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210091511/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.322079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.842735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.27617 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714766 SAMN22557969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210091515/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.792467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.681326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.977245 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714767 SAMN22557387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210091534/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.992867 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.238117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.884611 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714768 SAMN22557970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210091514/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.63149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.704624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.557173 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714769 SAMN22557386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210091537/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.669445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.136234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.953386 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714770 SAMN22557384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210091545/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.580055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.51044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.197418 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714771 SAMN22557385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210091542/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.549124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.742598 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.42588 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714772 SAMN22557383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210091546/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.681952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.503985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.9457245 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714773 SAMN22557382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210091550/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.69726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.662545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.809704 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714774 SAMN22558314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210092361/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.208387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.53031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.152788 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714775 SAMN22558257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210092363/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.650392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.278836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.371065 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714776 SAMN22558256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210092373/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.959845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.409492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.993149 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714777 SAMN22557775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210092378/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.796685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.157976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.712093 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714778 SAMN22559219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210092386/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.263184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.225798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.698757 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714779 SAMN22557623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210092371/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.200381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.642063 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.52781 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714780 SAMN22559218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210092387/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.831455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.18866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.764399 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714781 SAMN22558955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210092388/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.474022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.96195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.919615 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714782 SAMN22559111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210092392/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.010393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.999788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.623535 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714783 SAMN22557205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210092403/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.436255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.788415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.628897 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714784 SAMN22559217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210092405/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.114202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.308212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.818026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714785 SAMN22557206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210092402/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.606718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.519806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.118128 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714786 SAMN22559110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210092393/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.941336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.20882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.74649 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714787 SAMN22557007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210092413/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.150572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.345293 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.903696 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714788 SAMN22557958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092419/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.574088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.266247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.7497635 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714789 SAMN22557959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092417/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.982776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.928304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.112868 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714790 SAMN22557956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092423/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.682962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.83334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.292578 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714791 SAMN22557957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092422/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.45442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.507837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.316498 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714792 SAMN22557955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092424/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.62052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.700935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.279404 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714793 SAMN22557954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092425/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.362331 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.594042 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.487595 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714794 SAMN22558838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210092436/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.591693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.383835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.733311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714795 SAMN22558110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210092440/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.58821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.750675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.15696 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714796 SAMN22560010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094716/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.992054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.837173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.023996 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714797 SAMN22560009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094724/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.671067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.944749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.340585 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714798 SAMN22557731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094209/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.414942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.797425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.3880415 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714799 SAMN22557936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094728/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.643423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.930143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.884424 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714800 SAMN22556992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210094730/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.74582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.463835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.382713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714801 SAMN22557935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094729/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.1852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.956054 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.512231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714802 SAMN22556991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210094731/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.31362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.839067 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.459301 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714803 SAMN22556990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210094734/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.723117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.346493 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.205914 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714804 SAMN22560008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094735/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.812735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.38649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.331025 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714805 SAMN22556830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094736/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.814208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.931744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.5951605 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714806 SAMN22556829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094737/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.220172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.468507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.651303 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714807 SAMN22556828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094738/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.465677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.522203 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.294382 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714808 SAMN22556827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094739/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.494923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.297205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.679474 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714809 SAMN22556826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094740/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.371292 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.500034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.105991 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714810 SAMN22559208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094741/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.375436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.435529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.873549 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714811 SAMN22557934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094742/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.009748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.79246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.477453 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714812 SAMN22559861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094744/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.969051 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.18844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.488719 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714813 SAMN22560007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094743/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.844378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.239017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.610088 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714814 SAMN22559860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094745/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.960114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.184444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.960689 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714815 SAMN22559207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094746/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.178827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.528116 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.155472 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714816 SAMN22559096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094748/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.234373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.51948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.86001 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714817 SAMN22559206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094747/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.572687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.310793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.525711 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714818 SAMN22559095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094749/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.620386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.69662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.603094 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714819 SAMN22559094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094750/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.597364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.20597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.994148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714820 SAMN22557473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210094752/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.515436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.288191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.617423 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714821 SAMN22559093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094753/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.586603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.009098 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.021969 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714822 SAMN22559091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094755/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.16056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.637842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.94775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714823 SAMN22559092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094754/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.102938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.446254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.660985 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714824 SAMN22559205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094756/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.784151 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.578573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.904415 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714825 SAMN22559204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094757/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.465717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.273592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.133072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714826 SAMN22559961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094758/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.595554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.864765 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.596096 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714827 SAMN22557368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094759/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.789316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.12264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.814388 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714828 SAMN22556819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095209/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.282677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.641842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.566822 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714829 SAMN22556820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095208/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.817615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.613192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.628381 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714830 SAMN22557426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095210/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.16561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.921642 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714831 SAMN22556818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095212/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.779667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.811344 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.72168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714832 SAMN22557925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095216/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.75432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.361244 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.826288 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714833 SAMN22558194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095213/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.463999 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.77663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.469168 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714834 SAMN22558304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095214/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.676679 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.770441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.984337 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714835 SAMN22558303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095219/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.227407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.361254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.158539 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714836 SAMN22557924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095217/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.27694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.44082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.002035 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714837 SAMN22558192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095221/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.76631 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.719764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.446055 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714838 SAMN22558193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095220/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.984141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.299815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.94976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714839 SAMN22556817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095222/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.250467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.402334 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.745047 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714840 SAMN22559972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210093488/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.427481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.773837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.163554 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714841 SAMN22556816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095223/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.643336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.362012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.197096 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714842 SAMN22556836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210093493/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.542852 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.757656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.143148 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714843 SAMN22559108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210093495/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.201414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.946753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.928974 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714844 SAMN22559089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095021/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.873392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.15986 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.224133 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714845 SAMN22559088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095022/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.972402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.382952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.829923 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714846 SAMN22559087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095023/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.151129 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.403584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.368788 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714847 SAMN22559084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095028/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.94184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.377407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.596733 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714848 SAMN22559086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095026/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.279013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.347786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.627434 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714849 SAMN22559085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095027/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.61232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.920458 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.949535 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714850 SAMN22557430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095024/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.63576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.198555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.280362 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714851 SAMN22559083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095030/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.508299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.98355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.597939 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714852 SAMN22559082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095031/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.696704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.994238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.095616 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714853 SAMN22559956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095033/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.729692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.372328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.84153 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714854 SAMN22559081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095032/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.168709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.430119 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714855 SAMN22557350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095034/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.07366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.494946 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.530176 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714856 SAMN22557349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095035/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.606076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.900902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.341977 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714857 SAMN22557348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095036/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.774923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.838171 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.264675 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714858 SAMN22557347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095037/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.613949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.292435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9915495 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714859 SAMN22559955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095040/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.884064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.779968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.586339 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714860 SAMN22557346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095041/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.476499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.209627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.549931 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714861 SAMN22557345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095042/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.508583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.509255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.126351 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714862 SAMN22557344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095043/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.142606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.21024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.872103 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714863 SAMN22557343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095045/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.531043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.211007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.708872 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714864 SAMN22557342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095048/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.784578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.09638 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.557582 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714865 SAMN22557341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095049/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.997452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.40173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.929523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714866 SAMN22560066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095052/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.979402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.249424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.844707 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714867 SAMN22560067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095051/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.197195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.811008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.37926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714868 SAMN22560065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095053/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.669937 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.828737 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.808323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714869 SAMN22560064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095054/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.675741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.610703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.419937 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714870 SAMN22560063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095055/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.623127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.488792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.942955 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714871 SAMN22560062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095056/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.778006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.551018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.208052 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714872 SAMN22559080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095057/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.680847 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.17439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.90454 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714873 SAMN22560061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095058/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.253357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.586143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.293652 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714874 SAMN22559954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095060/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.372572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.667261 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.14367 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714875 SAMN22560060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095059/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.994213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.549106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.911256 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714876 SAMN22558999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095286/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.436327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.672853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.403109 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714877 SAMN22559944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095285/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.215266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.93317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.149231 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714878 SAMN22556920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095287/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.710323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.001629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.785158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714879 SAMN22560000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095288/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.666924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.285521 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.6386385 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714880 SAMN22559999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095289/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.824686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.828362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.496868 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714881 SAMN22557922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095290/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.159985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.434155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.278475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714882 SAMN22558998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095291/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.873136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.76172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.346799 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714883 SAMN22558041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095292/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.759848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.8518 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.605904 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714884 SAMN22558040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095293/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.335026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.218546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.113025 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714885 SAMN22558039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095294/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.987743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.91941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.583113 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714886 SAMN22558038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095295/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.402828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.11279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.192949 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714887 SAMN22558037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095296/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.270599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.855367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.872575 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714888 SAMN22558036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095299/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.97592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.994019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.658726 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714889 SAMN22557168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095297/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.30702 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 34.101475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.754034 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714890 SAMN22557570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095298/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.532717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.356407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.342936 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714891 SAMN22556919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095300/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.882331 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.144762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.557129 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714892 SAMN22559998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095301/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.117752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.184443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.542662 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714893 SAMN22557167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095303/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.297096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.542899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.367486 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714894 SAMN22556918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095304/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.455831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.380019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.914554 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714895 SAMN22556917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095305/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.515577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.45853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.730352 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714896 SAMN22556916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095307/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.299974 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.428469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.836485 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714897 SAMN22558190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095308/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.718557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.190592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.447535 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714898 SAMN22558189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095310/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.565484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.598016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.563301 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714899 SAMN22558188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095311/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.106836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.024448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.113809 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714900 SAMN22558187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095312/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.814035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.645973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.332346 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714901 SAMN22557165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095316/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.930824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.635788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.263353 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714902 SAMN22557166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095315/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.955477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.365839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.30296 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714903 SAMN22557164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095317/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.70119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.73742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.579294 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714904 SAMN22557163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095318/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.202401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.534776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.278941 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714905 SAMN22559943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095319/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.900915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.766771 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.57161 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714906 SAMN22558244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095320/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.51869 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.227869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.019282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714907 SAMN22558035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095321/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.92426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.541092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.707382 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714908 SAMN22557119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317342/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.642958 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.378754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.83329 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714909 SAMN22557118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317343/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.508883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.119194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.281605 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714910 SAMN22557117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317344/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.004894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.610655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.30378 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714911 SAMN22557116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317345/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.645666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.673154 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.239865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714912 SAMN22558893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317353/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.136837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.685207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.644669 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714913 SAMN22558892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317354/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.620802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.114456 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.005514 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714914 SAMN22557115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317355/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.964468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.805742 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.45024 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714915 SAMN22556889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317356/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.916775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.505295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.662233 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714916 SAMN22558891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317357/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.97146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.740004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.526451 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714917 SAMN22556888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317358/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.125688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.217316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.362299 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714918 SAMN22557873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317360/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.729422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.932192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.284771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714919 SAMN22559066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317361/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.270489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.94872 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.731625 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714920 SAMN22557973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210317362/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.305878 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.230177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.58905 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714921 SAMN22557972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210317363/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 98 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.63772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.344756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.432967 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714922 SAMN22556999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210317364/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.382008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.7405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.761349 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714924 SAMN22556998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210317365/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.380684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.255047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.53681 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714925 SAMN22558889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317367/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.582259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.838246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.94635 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714926 SAMN22557716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317368/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.319345 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.598454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.609232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714927 SAMN22558888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317370/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.498255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.350088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.502653 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714928 SAMN22558241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210317369/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.11734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.551937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.887758 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714929 SAMN22558318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210317371/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.288786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.35651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.931587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714930 SAMN22557872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317381/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.49338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.267241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.321662 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714931 SAMN22559915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317382/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.107006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.145452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.224645 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714923 SAMN22558890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317366/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.389997 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.30768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.649225 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714932 SAMN22557539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317384/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.748281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.163887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.871643 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714933 SAMN22559914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317388/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.156142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.399959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.080633 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714934 SAMN22559913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317394/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.522977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.494649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.738164 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714935 SAMN22559912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317395/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.962411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.553066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.694997 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714936 SAMN22559911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317396/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.76656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.453362 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.240559 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714937 SAMN22558240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210317399/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.250145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.447731 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.672408 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714938 SAMN22558170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317397/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.866463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.680538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.955746 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714939 SAMN22559245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210317398/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.27697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.268877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.622528 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714940 SAMN22557446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210376487/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.458752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.225819 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.94173 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714941 SAMN22558859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376488/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.78859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.502039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.763752 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714942 SAMN22556856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376489/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.324099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.604069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.211319 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714943 SAMN22557846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210376490/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.94434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.478245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.736969 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714944 SAMN22557845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210376492/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.6171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.060719 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.965635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714945 SAMN22556855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376495/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.446589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.428432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.734601 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714946 SAMN22556854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376496/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.443823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.032118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.776043 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714947 SAMN22556853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376497/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.63868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.789682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.412766 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714948 SAMN22556852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376498/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.710669 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.469017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.216658 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714949 SAMN22557762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210376499/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.854915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.843078 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.73015 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714950 SAMN22557761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210376500/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.486122 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.694786 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.186804 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714951 SAMN22557758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210376503/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.563895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.251812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.882641 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714952 SAMN22557760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210376501/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.207378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.11733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.876675 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714953 SAMN22557759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210376502/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.622816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.802944 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.930119 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714954 SAMN22559877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210376504/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.930332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.850698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.6916 lineage/clade name AY.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714955 SAMN22559876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210376505/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.773148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.272844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.879448 lineage/clade name AY.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714956 SAMN22557470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210376506/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.898173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.431414 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.466397 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714957 SAMN22557043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376507/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.305946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.602901 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.55009 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714958 SAMN22557042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376509/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.092028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.629295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.911343 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714959 SAMN22558858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376510/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.2065735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.145313 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.7827 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714960 SAMN22558857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376512/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.906224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.65954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.201483 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714961 SAMN22558856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376513/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.899471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.449774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.906397 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714962 SAMN22558855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376514/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.964973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.473747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.244574 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714963 SAMN22558854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376515/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.410047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.456499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.703735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714964 SAMN22556851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376516/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.59374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.158869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.421112 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714965 SAMN22558853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376517/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.711606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.671573 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.452717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714966 SAMN22558852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376518/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.484509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.975576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.655176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714967 SAMN22558851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376519/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.721693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.896542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.017667 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714968 SAMN22557988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376522/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.544113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.366156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.412935 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714969 SAMN22557989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376521/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.52055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.811926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.120697 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714970 SAMN22558850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376520/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.7507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.284756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.385973 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714971 SAMN22557987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376523/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.90993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.990461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.219786 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714972 SAMN22557424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095396/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.743877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.284178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.41905 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714973 SAMN22557423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095397/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.392414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.954447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.008545 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714974 SAMN22557422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095398/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.185985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.591587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.478121 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714975 SAMN22558090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095400/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.574427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.545816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.397715 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714976 SAMN22558089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095401/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.459212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.232873 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.167938 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714977 SAMN22557421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095399/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.12594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.540195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.52872 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714978 SAMN22558028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095402/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.30806 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.511603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.367471 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714979 SAMN22558027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095403/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.16076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.000467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.657232 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714980 SAMN22558919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095404/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.571402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.436504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.867962 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714981 SAMN22558918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095405/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.206928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.582817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.50783 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714982 SAMN22558026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095407/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.802303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.345352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.874838 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714983 SAMN22558917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095406/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.930407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.997974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.895258 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714984 SAMN22557150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095410/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.028928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.795734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.019043 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714985 SAMN22557420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095411/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.007432 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.674183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.355368 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714986 SAMN22557569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095412/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.509719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.555162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.116597 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714987 SAMN22557568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095413/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.825778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.586763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.598004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714988 SAMN22558420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095414/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.704311 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.95435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.826448 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714989 SAMN22557567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095415/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.950829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.594896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.939987 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714990 SAMN22557566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095417/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.364187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.553977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.300779 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714991 SAMN22557565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095418/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.505411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.555517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.190493 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714992 SAMN22557564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095419/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.208726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.434637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.8987255 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714993 SAMN22557563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095420/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.765304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.168153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.739948 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714994 SAMN22558025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095424/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.717442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.446878 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.407831 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714995 SAMN22558380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210095425/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.692627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.833291 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.49442 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714996 SAMN22558024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095426/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.542683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.429439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.97897 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714997 SAMN22558023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095427/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.69877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.257874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.542328 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714998 SAMN22558022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095428/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.690538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.511235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.280997 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714999 SAMN22557419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095430/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.59202 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.260534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.562708 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715000 SAMN22558021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095429/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.750139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.583043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.669254 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715001 SAMN22557418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095438/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.7145815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.909439 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.551642 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715002 SAMN22557149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095439/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.54365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.957993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.263613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715003 SAMN22558088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095440/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.636039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.614621 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.306709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715004 SAMN22557741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210093497/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.672504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.297264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.590528 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715005 SAMN22557197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093500/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.869369 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.237405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.77543 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715006 SAMN22557196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093501/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.394985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.925381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.212725 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715007 SAMN22557195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093510/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.402935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.7521 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.947365 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715008 SAMN22558215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210093506/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.64262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.881609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.596019 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715009 SAMN22557194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093512/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.266758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.251183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.273304 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715010 SAMN22559107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210093514/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.404761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.698581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.049922 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715011 SAMN22558981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210093516/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.479353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.783535 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.492228 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715012 SAMN22557193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093517/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.460487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.302847 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.008337 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715013 SAMN22557192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093521/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.798418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.771181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.79136 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715014 SAMN22558980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210093522/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.457077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.770667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.774975 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715015 SAMN22558371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210093523/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.703302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.03365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.856915 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715016 SAMN22558048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210093525/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.004347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.990223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.789316 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715017 SAMN22558979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210093528/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.359291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.08499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.761702 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715018 SAMN22559971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210093529/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.653831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.513712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.21127 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715019 SAMN22557191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093531/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.140985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.580755 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.742935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715020 SAMN22558047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210093532/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.557133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.929253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.929482 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715021 SAMN22559970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210093534/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.499727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.506483 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.721043 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715022 SAMN22557944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093538/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.535278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.128119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.682201 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715023 SAMN22559008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/HI-CDC-ASC210093540/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.080091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.337477 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.980387 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715024 SAMN22558978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210093545/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.081478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.811194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.017605 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715025 SAMN22556961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093546/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.879791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.526455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.222288 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715026 SAMN22558954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210093541/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.956566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.523009 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.522759 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715027 SAMN22556960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093550/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.118357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.423562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.294589 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715028 SAMN22557432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210093548/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.430843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.517853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.43041 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715029 SAMN22557469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210093642/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.444498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.53292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.640135 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715030 SAMN22557376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093720/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 34 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.568615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.59189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.75286 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715031 SAMN22557190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093680/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.447636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.88876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.84529 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715032 SAMN22557375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093721/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.252344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.547607 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.419321 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715033 SAMN22557373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093723/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.386839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.892877 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.691132 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715034 SAMN22557374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093722/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.724375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.428318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.243416 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715035 SAMN22557933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095064/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.962849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.57622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.378218 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715036 SAMN22557429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095062/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.169998 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.733122 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.17247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715037 SAMN22558214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210093814/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.520161 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.919358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.704488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715038 SAMN22559953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095065/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.579154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.499806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.785928 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715039 SAMN22558934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095066/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.658344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.153532 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.081562 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715040 SAMN22557932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095067/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.571115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.752827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.28805 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715041 SAMN22558933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095070/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.749746 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.137453 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.4387 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715042 SAMN22557931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095068/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.871489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.37762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.142311 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715043 SAMN22557589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095072/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.312183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.679218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.21521 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715044 SAMN22557930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095069/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.401585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.813658 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.414545 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715045 SAMN22558199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095073/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.18133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.488655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.726011 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715046 SAMN22556946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095074/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.409317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.58808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.781169 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715047 SAMN22559952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095076/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.762742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.827198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.408023 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715048 SAMN22556945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095075/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.493713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.649704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.407688 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715049 SAMN22558932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095079/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.547596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.349881 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.718196 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715050 SAMN22558216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ME-CDC-ASC210095078/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.131054 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.420681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.775943 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715051 SAMN22558931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095080/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.784597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.501295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.29804 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715052 SAMN22557929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095084/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.386857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.306281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.313086 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715053 SAMN22559951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095083/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.258774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.635931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.697182 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715054 SAMN22559079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095085/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.220232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.320301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.403603 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715055 SAMN22557177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095089/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.420965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.155727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.953738 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715056 SAMN22557178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095088/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.645553 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.418242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.895383 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715057 SAMN22557586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095094/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.261826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.654985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.1512 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715058 SAMN22557587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095093/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.45408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.959799 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.573794 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715059 SAMN22557588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095092/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.851498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.71619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.187489 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715060 SAMN22558930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095096/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.306433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.18049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.629047 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715061 SAMN22559200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095098/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.780837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.206875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.399264 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715062 SAMN22557585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095095/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.814813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.706746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.430231 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715063 SAMN22557583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095100/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.238247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.074759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.836533 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715064 SAMN22557584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095099/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.930101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.885969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.639423 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715065 SAMN22557582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095101/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.190176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.601994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.263956 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715066 SAMN22557581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095102/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.139274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.221295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.882267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715067 SAMN22559251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210095104/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.995903 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.585321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.98012 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715068 SAMN22557176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095103/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.525782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.344972 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.610761 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715069 SAMN22558977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095105/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.235388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.837809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.467175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715070 SAMN22558976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095106/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.653393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.453363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.35291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715071 SAMN22558975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210095107/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.3698 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.95558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.682217 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715072 SAMN22559949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095109/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.743322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.388441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.12817 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715073 SAMN22559950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095108/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.628124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.216978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.603454 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715074 SAMN22559947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095112/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.919959 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.701345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.528615 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715075 SAMN22559948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095111/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.872279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.009454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.786233 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715076 SAMN22559946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095113/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.298446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.569569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.48896 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715077 SAMN22559945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095114/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.205929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.595435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.305952 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715078 SAMN22557928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095149/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.532057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.814089 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.28154 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715079 SAMN22557580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095140/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.2728615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.824429 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.815932 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715080 SAMN22557428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095150/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.25034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.195677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.834717 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715081 SAMN22557427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095151/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.946787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.729572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.2933 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715082 SAMN22557927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095153/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.863747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.806583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.390116 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715083 SAMN22556988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095155/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.965094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.369064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.589844 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715084 SAMN22557175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095157/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 33.028545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 33.274834 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715085 SAMN22556821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095156/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.356516 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.954282 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.262632 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715086 SAMN22556943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095159/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.642399 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.486834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.592325 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715087 SAMN22556944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095158/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.369192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.6488285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.11721 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715088 SAMN22557174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095160/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.389786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.244436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.953718 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715089 SAMN22557173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095162/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.355072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.085106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.87426 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715090 SAMN22557926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095164/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.106493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.727798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.440206 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715091 SAMN22557172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095163/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.091644 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.707423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.12966 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715092 SAMN22560003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095161/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.320056 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.691712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.008669 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715093 SAMN22556942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095166/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.168158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.188292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.265968 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715094 SAMN22556941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095167/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.324291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.089648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.407373 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715095 SAMN22556940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095168/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.2763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.867298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.191015 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715096 SAMN22558198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095169/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.516457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.920933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.815908 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715097 SAMN22556939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095170/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.540626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.965289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.214514 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715098 SAMN22556937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095172/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.237844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.511846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.250575 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715099 SAMN22556938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095171/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.421078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.643023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.236992 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715100 SAMN22558087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095441/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.823317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.732315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.697611 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715101 SAMN22558086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095442/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.737892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.414891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.4239855 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715102 SAMN22556987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095443/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.517994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.922966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.54847 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715103 SAMN22557148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095444/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.930463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.116976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.224571 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715104 SAMN22558916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095445/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.733782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5782175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.493624 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715105 SAMN22558020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095446/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.667116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.908127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.603378 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715106 SAMN22557463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210095448/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.499939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.486277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.838263 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715107 SAMN22556815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095449/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.222339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.8725395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.851324 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715108 SAMN22556814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095450/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.312777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.628422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.89927 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715109 SAMN22557417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210095447/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.675299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.322374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.649147 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715110 SAMN22556813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095451/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.987574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.855587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.94514 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715111 SAMN22560055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095523/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.262417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.722496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.147257 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715112 SAMN22557147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095452/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.673319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.742779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.391434 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715113 SAMN22560054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095524/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.304829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.291014 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.855583 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715114 SAMN22560053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095525/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.295624 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.698454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.3754 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715115 SAMN22560050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095528/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.673404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.999065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.386259 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715116 SAMN22560051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095527/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.281106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.883967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.540952 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715117 SAMN22557339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095529/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.258825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.337545 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.598127 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715118 SAMN22560052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095526/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.852946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.392347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.804494 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715119 SAMN22557338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095530/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.543283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.678801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.382005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715120 SAMN22557337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095531/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.575346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.737589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.07265 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715121 SAMN22557336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095532/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.74447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.390623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.825138 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715122 SAMN22557335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095533/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.685988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.72674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.484927 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715123 SAMN22557334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095534/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.869507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.920441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.872537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715124 SAMN22557332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095536/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.146629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.006499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.5091715 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715125 SAMN22557331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095537/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.103436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.696728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.296463 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715126 SAMN22557333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095535/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.38115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.63383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.843435 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715127 SAMN22557330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095538/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.207762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.178764 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.799232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715128 SAMN22557329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095539/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.90662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.495514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.843497 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715129 SAMN22558321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210095540/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.86933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.850761 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.66217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715130 SAMN22559941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095544/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.817791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.550766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.197351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715131 SAMN22558953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210093935/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.507778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.633383 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.38091 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715132 SAMN22559942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095543/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.624561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.912308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.517982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715133 SAMN22560072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210093999/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.695219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.204031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.698042 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715134 SAMN22560071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210094000/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.638075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.557728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.298376 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715135 SAMN22557189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093998/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.786606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.404228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.994738 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715136 SAMN22559969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094001/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.845419 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.542389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.370676 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715137 SAMN22559968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094002/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.09625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.686682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.201014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715138 SAMN22559966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094004/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.769178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.54629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.211073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715139 SAMN22559965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094005/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.69426 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.295092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.55706 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715140 SAMN22559106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094039/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.369246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.372656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.941475 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715141 SAMN22559967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094003/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.578164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.162127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.478262 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715142 SAMN22559105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094040/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.668356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.123629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.372686 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715143 SAMN22557468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210094042/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.817158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.315612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.416839 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715144 SAMN22559964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094043/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.262714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.262909 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.907082 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715145 SAMN22556957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094047/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.302164 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.385052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.903816 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715146 SAMN22556958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094046/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.329729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.803233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.476457 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715147 SAMN22556959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094045/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.354961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.386683 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.509885 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715148 SAMN22556956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094048/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.594363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.498191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.242518 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715149 SAMN22556955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094049/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.72372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.415871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.911338 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715150 SAMN22556954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094050/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.746307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.66484 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.15609 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715151 SAMN22556953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094051/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.150217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.80474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.828615 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715152 SAMN22558952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094054/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.979818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.480179 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.11713 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715153 SAMN22556994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210094052/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.570568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.269882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.01305 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715154 SAMN22557740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094058/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.650671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.642874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.9623 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715155 SAMN22557188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094056/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.608593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.070587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.531382 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715156 SAMN22559963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094059/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.721347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.978657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.243895 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715157 SAMN22559213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094060/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.32315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.740406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.612911 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715158 SAMN22559211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094062/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.620403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.909616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.344389 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715159 SAMN22559210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094063/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.174131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.491214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.176467 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715160 SAMN22559212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094061/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.913513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.718937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.84498 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715161 SAMN22558951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094066/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.882378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.776945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.470276 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715162 SAMN22557943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094067/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.613703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.489578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.388338 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715163 SAMN22559962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094068/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.469114 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.283379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.907869 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715164 SAMN22558196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095174/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.355747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.4885025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.81327 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715165 SAMN22558195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095175/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.967913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.587667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.721676 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715166 SAMN22556936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095176/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.53052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 33.668686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.611885 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715167 SAMN22558197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095173/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.326855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.443907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.213768 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715168 SAMN22558044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095177/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.432351 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.868495 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715169 SAMN22559004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095178/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.454388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.515366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.737432 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715170 SAMN22558101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095179/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.54366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.640053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.483727 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715171 SAMN22559223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210095180/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.409214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.515629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.198744 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715172 SAMN22557465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210095181/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.399613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.378523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.710399 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715173 SAMN22556935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095183/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.671883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.842728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.801217 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715174 SAMN22558929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095182/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.798409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.90349 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.657108 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715175 SAMN22556934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095184/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.836586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.248568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.755091 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715176 SAMN22558367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095185/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.35994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.265322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.527347 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715177 SAMN22558332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375695/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.600502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.87487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.138863 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715178 SAMN22558865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375696/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.015694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.959584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.908434 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715179 SAMN22557500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375697/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.52169 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.43019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.587004 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715180 SAMN22557498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375699/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.31343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.68902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.50526 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715181 SAMN22557497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375700/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.339671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.898494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.888433 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715182 SAMN22557499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375698/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.549158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.958788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.584816 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715183 SAMN22556865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375701/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.829664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.008133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.642021 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715184 SAMN22558271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375703/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.816313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.648405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.727533 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715185 SAMN22556864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375702/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.337395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.971813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.616764 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715186 SAMN22558270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375704/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.40987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.939045 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.832802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715187 SAMN22558269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375705/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.634443 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.151939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.840903 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715188 SAMN22559889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375707/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.234892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.26644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.221937 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715189 SAMN22559888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375708/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.057453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.762753 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.968187 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715190 SAMN22558864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375709/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.16872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.194824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.740917 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715191 SAMN22558863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375710/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.574442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.520712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.007044 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715192 SAMN22557849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210375712/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.590336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.396172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.66368 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715193 SAMN22557496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375714/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.929556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.853061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.428046 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715194 SAMN22557495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375715/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.560744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.297228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.900101 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715195 SAMN22557486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380104/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.45064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.294048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.665617 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715196 SAMN22558058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375716/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.834133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.560114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.776665 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715197 SAMN22557025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380107/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.19002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.005299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.45885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715198 SAMN22558987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380106/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.009506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.749882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.114695 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715199 SAMN22557485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380108/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.89689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.34055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.364141 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715200 SAMN22558845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380109/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.47268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.616825 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.310736 lineage/clade name AY.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715201 SAMN22559112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210380110/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.94683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.229021 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.209993 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715202 SAMN22557785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380111/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.308647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.711994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.72247 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715203 SAMN22557783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380113/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.992141 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.720589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.296539 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715204 SAMN22557784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380112/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.823367 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.241677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.281286 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715205 SAMN22557024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380114/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.540424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.39099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.074278 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715206 SAMN22557484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380115/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.600262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.773106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.317638 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715207 SAMN22558259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210380116/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.88389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.943165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.816707 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715208 SAMN22559866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380117/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.863703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.624317 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.85184 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715209 SAMN22560015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210380119/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.947112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.292553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.320612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715210 SAMN22559865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380118/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.39986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.963239 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.300531 lineage/clade name AY.7.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715211 SAMN22559864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380120/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.871992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.087214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.467567 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715212 SAMN22559863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380121/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.929435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.13711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.110259 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715213 SAMN22558258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210380122/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.647424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.8208885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.195141 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715214 SAMN22557023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380123/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.391449 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.843746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.52574 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715215 SAMN22557444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210380124/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.0916395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.413616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.838263 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715216 SAMN22557782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380126/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.35744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.588002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.452582 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715217 SAMN22560014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210380125/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.155613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.01387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.806318 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715218 SAMN22558112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210380127/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.944767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.495547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.907564 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715219 SAMN22558219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380128/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.457374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.001975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.345962 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715220 SAMN22558111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210380129/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.313479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.230858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.931398 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715221 SAMN22557227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380136/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.433582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.499874 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715222 SAMN22557226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380224/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.175349 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.442833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.129939 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715223 SAMN22557225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380225/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.22146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.765514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.522388 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715224 SAMN22557224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380226/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.908301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.463345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.822923 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715225 SAMN22557223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380227/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.278849 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.375387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.372118 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715226 SAMN22557022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380228/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.040894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.087358 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.192127 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715227 SAMN22558327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380229/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.499094 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.254824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.41377 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715228 SAMN22559252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094902/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.446988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.230818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6738205 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715229 SAMN22560006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094904/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.965275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.222504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.193337 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715230 SAMN22560005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094905/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.7246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.519625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.198162 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715231 SAMN22559957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094906/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.47511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.772186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.228807 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715232 SAMN22557365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094909/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.92955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.67226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.514524 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715233 SAMN22560004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210094907/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.951061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.822267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.4449625 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715234 SAMN22557364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094913/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.465658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.813307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.852707 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715235 SAMN22557363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094914/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.990964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.637558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.930367 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715236 SAMN22558829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094916/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.260261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.660952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.397806 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715237 SAMN22557180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094917/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.3171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.163196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.965428 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715238 SAMN22557974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210094918/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.912884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.28683 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.755733 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715239 SAMN22557179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094920/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.722614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.85903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.431744 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715240 SAMN22557362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094930/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.873976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.750557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.966509 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715241 SAMN22558201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094932/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.506319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.448563 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.86774 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715242 SAMN22558200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094935/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.390207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.822481 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.620678 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715243 SAMN22558935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094936/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.352627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.740616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.480616 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715244 SAMN22558429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094938/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.228704 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.570637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.309626 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715245 SAMN22557361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094939/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.611502 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.423813 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.374501 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715246 SAMN22556989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210094950/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.418809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.199419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.485036 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715247 SAMN22557590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094954/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.502872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.123962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.597106 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715248 SAMN22558368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210094951/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.93556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.763494 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.730972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715249 SAMN22557360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094955/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.717836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.937107 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.662019 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715250 SAMN22557359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094958/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.412933 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.225109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.645537 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715251 SAMN22557358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094960/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.75481 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.646421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.396161 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715252 SAMN22557357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094961/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.479401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.746748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.558543 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715253 SAMN22557356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094963/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.515991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.264853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.034014 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715254 SAMN22557355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094965/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.563896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.612473 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.22906 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715255 SAMN22557354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094966/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.377023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.248256 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.208506 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715256 SAMN22557353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094970/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.667707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.125682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.5853195 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715257 SAMN22557352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094972/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.154757 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.169287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.462467 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715258 SAMN22557351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094973/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.87521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.731695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.572843 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715259 SAMN22557728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094978/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.157436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.387781 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.942436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715260 SAMN22558994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210334543/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 32.583027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.045578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.637493 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715261 SAMN22557100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334544/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.600522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.856913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.319482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715262 SAMN22558007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210334545/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.45423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.717064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.321144 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715263 SAMN22557527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210334546/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.920286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.449413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.945845 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715264 SAMN22557526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210334547/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.109717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.139475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.732137 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715265 SAMN22557525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210334548/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.326918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.024452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.716459 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715266 SAMN22557099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334551/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.836258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.577341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.023108 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715267 SAMN22557098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334552/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.783822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.301115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.692765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715268 SAMN22558877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210334554/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.736509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.960064 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.007907 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715269 SAMN22559061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334555/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.44934 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.702442 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.46594 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715270 SAMN22559060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334556/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.857491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.380386 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.271944 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715271 SAMN22558876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210334557/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.487614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.838191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.726747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715272 SAMN22557714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210334558/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.615816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.900318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.769068 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715273 SAMN22557713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210334559/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.819891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.336189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.185477 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715274 SAMN22558154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210334560/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.90145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.761301 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5414505 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715275 SAMN22558153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210334561/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.584848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.2686205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.300929 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715276 SAMN22558406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210334563/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.590176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.344057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.824278 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715277 SAMN22558405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210334564/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.602657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.309587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.05231 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715278 SAMN22558404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210334566/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.745872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.241477 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.170093 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715279 SAMN22557097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334567/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.552441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.842323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.974883 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715280 SAMN22557712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210334568/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.20256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.548794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.587826 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715281 SAMN22557096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334569/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.939917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.458954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.502361 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715282 SAMN22557095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334570/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.121216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.973213 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.938122 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715283 SAMN22557094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334571/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.433883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.73896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.0350065 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715284 SAMN22557093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334572/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.4293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.961584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.437587 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715285 SAMN22559904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210334573/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.362375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.621548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.611835 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715286 SAMN22557863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334577/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.812491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.644348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.166757 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715287 SAMN22557092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334574/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.1922 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.152855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.523388 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715288 SAMN22557091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334578/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.7481575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.466519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.529142 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715289 SAMN22557090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334579/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.067548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.256769 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.164656 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715290 SAMN22557862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334593/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.168634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.209192 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.90326 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715291 SAMN22557861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334594/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.565228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.459936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.460402 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715292 SAMN22557070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335880/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.593976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.71838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.01428 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715293 SAMN22558342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335881/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.749149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.624462 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.208416 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715294 SAMN22557310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335885/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.539131 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.682734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.740347 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715295 SAMN22557309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335886/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.756244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.631991 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.736085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715296 SAMN22558873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210335905/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.549439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.017412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.504026 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715297 SAMN22559984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335906/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.603548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.537035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.38694 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715298 SAMN22559983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335907/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.632187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.602148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.905889 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715299 SAMN22559982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335908/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.605253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.78678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.02166 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715300 SAMN22559981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335909/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.961485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.697582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.711012 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715301 SAMN22559980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335910/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.006037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.519322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.239903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715302 SAMN22559979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335911/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.844423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.562281 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715303 SAMN22557707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335912/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.191504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.325191 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.618084 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715304 SAMN22557635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335913/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.701024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.262367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.546429 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715305 SAMN22557706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335914/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.384454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.54073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.387109 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715306 SAMN22559171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335915/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.517541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.932416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.538856 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715307 SAMN22558285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335916/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.845585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.785447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.7074995 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715308 SAMN22558284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335917/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.381584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.510641 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.349573 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715309 SAMN22558283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335918/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.6926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.298175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.37318 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715310 SAMN22558282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335919/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.976063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.29634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.812551 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715311 SAMN22558281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335920/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.754467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.010101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.49866 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715312 SAMN22558280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335921/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.633792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.319816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.913821 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715313 SAMN22558279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335922/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.948315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.481417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.996408 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715314 SAMN22558278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210335923/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.788855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.763758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.3461 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715315 SAMN22558144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335924/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.1423435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.833617 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8818655 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715316 SAMN22558143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335925/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.008298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.61186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.615093 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715317 SAMN22558141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335927/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.032166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.762568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.589632 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715318 SAMN22558142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335926/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.268282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.015108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.175073 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715319 SAMN22559170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335928/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.755218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.190762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.378494 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715320 SAMN22559169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335929/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.758772 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.596205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.58877 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715321 SAMN22558140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335930/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.793629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.691576 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.621756 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715322 SAMN22558139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335931/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.914103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.917133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.426163 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715323 SAMN22558138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335932/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.898339 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.874926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.705019 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715324 SAMN22558121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375717/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.12317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.308672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.691477 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715325 SAMN22557057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210375721/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.392176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.237528 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.442528 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715326 SAMN22556863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375738/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.274754 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.563139 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.229129 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715327 SAMN22556862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375739/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.456945 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.630542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.2373085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715328 SAMN22556861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375740/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.835928 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.38284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.645924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715329 SAMN22559887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375741/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.983246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.459572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.990358 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715330 SAMN22558057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375742/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.353107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.26497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.745024 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715331 SAMN22557056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210375743/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.622965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.202805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.830254 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715332 SAMN22557055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210375745/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.931017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.674822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.385736 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715333 SAMN22559234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210375746/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.517875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.264476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.729917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715334 SAMN22559233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210375747/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.403227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.54394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.72286 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715335 SAMN22559886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375749/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.88565 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.489529 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.209036 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715336 SAMN22559885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375750/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.57742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.254475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.646925 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715337 SAMN22559884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375751/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.750414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.623945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.973509 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715338 SAMN22558056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375752/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.878593 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.488148 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.090084 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715339 SAMN22558055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375753/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.71983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.794657 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.310972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715340 SAMN22558119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375755/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.600625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.2832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.857188 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715341 SAMN22558120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375754/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.219076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.28868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.940928 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715342 SAMN22558118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375756/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.974296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.19418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.683922 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715343 SAMN22559025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210375757/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.551129 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.414831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.256443 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715344 SAMN22559024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210375758/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.255503 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.124226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.174056 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715345 SAMN22557971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210375759/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.875938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.872347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.310072 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715346 SAMN22556860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375760/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.971882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.897581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.519249 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715347 SAMN22557493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375763/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.841158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.300463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.946432 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715348 SAMN22557494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210375762/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.839827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.442476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.106169 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715349 SAMN22558387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210375764/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.302261 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.527287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.427296 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715350 SAMN22558117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375765/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.968113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.460885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.609963 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715351 SAMN22556859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375766/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.932425 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.911564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.866875 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715352 SAMN22556858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375767/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.452348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.238833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.413148 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715353 SAMN22556857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375802/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.627337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.722398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.717311 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715354 SAMN22560029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375804/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.13519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.965662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.987278 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715355 SAMN22560030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375803/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.999414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.440424 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.214005 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715356 SAMN22558326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380230/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.500927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.327883 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.803642 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715357 SAMN22558844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380231/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.468349 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.486193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.300924 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715358 SAMN22558325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380232/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.425338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.57949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.627145 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715359 SAMN22558843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380233/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.569155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.897575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.205837 lineage/clade name AY.7.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715360 SAMN22558324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380234/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.84619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.233662 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.515282 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715361 SAMN22557445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210380235/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.6301823 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.518055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.377806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715362 SAMN22557752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210380236/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.356712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.78669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.089553 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715363 SAMN22557222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380237/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.747866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.801857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.786312 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715364 SAMN22557221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380238/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.462319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.219086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6451 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715365 SAMN22557220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380239/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.12209 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.869915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.944342 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715366 SAMN22557219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380240/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.600214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.151616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.797523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715367 SAMN22557218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380241/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.899715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.203009 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.933195 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715368 SAMN22557217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380244/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.481735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.172752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.401892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715369 SAMN22557216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380245/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.1935005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.993769 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.118656 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715370 SAMN22557215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380246/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.830467 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.329838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.9873 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715371 SAMN22557214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380247/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.455442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.768217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.665878 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715372 SAMN22557213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380248/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.981363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.826134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.530106 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715373 SAMN22557212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380249/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.350087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.98118 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.29228 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715374 SAMN22557211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380250/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.7711525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.5461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.627661 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715375 SAMN22557210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380251/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.294098 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.830357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.559258 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715376 SAMN22557209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380252/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.990854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.969637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.668976 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715377 SAMN22557208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380253/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.895714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.604279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.304293 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715378 SAMN22557207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210380254/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.154154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.67052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.550203 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715379 SAMN22557781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380256/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.514616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.840124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.584776 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715380 SAMN22557780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380257/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.047102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.870417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.026596 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715381 SAMN22557779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380258/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.511953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.308058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.199793 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715382 SAMN22557778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380259/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.2375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.871597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.017519 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715383 SAMN22557777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380260/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.312434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.268474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.664135 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715384 SAMN22557776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380261/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.441427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.66602 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.345663 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715385 SAMN22557021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380262/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.869728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.94245 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.29965 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715386 SAMN22557020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380263/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.285532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.971294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.239717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715387 SAMN22558842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380264/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.686514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.55057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.31564 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715388 SAMN22558928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095224/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.406304 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.806211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.133268 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715389 SAMN22557578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095225/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.225887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.6438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.185663 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715390 SAMN22557577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095226/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.315332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.217829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.005177 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715391 SAMN22557576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095227/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.636081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.186007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.485639 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715392 SAMN22557575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095228/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.69416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.588127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.452942 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715393 SAMN22557574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095229/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.6446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.294271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.833519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715394 SAMN22558927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095230/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.604614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.741626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.366228 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715395 SAMN22558926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095232/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.715451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.676861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.767141 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715396 SAMN22558925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095233/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.884868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.623259 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.898484 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715397 SAMN22557464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210095239/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.170242 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.257243 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.458808 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715398 SAMN22557171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095238/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.584265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.824768 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.223469 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715399 SAMN22558100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095241/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.584183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.595006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.452604 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715400 SAMN22558248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095242/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.118715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.329292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.667351 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715401 SAMN22557841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210095244/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.345785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.615524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.307013 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715402 SAMN22557170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095247/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.994213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.742277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.76022 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715403 SAMN22559003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210095248/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.67646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.165289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.989597 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715404 SAMN22558099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095249/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.492377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.779673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.038085 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715405 SAMN22560059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095250/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.590254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.820675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.2612 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715406 SAMN22557169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095251/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.10394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.170803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.271487 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715407 SAMN22558428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095322/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.462236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.940304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.50755 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715408 SAMN22558427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095323/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.884655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.752207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.721838 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715409 SAMN22558426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095324/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.535796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.761073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.367721 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715410 SAMN22557647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210095325/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.803307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.65015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.687761 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715411 SAMN22557162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095326/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.865793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.880707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.149641 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715412 SAMN22557161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095328/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.66303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.159101 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.81104 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715413 SAMN22557160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095329/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.035013 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.989752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.229776 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715414 SAMN22558922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095330/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.754286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.42394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.38413 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715415 SAMN22557158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095332/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.27995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.310541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.757713 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715416 SAMN22557159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095331/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.040257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.26321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.68966 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715417 SAMN22557157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095335/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.261006 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.652629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.008231 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715418 SAMN22559222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210095333/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.511597 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.155853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.853075 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715419 SAMN22557156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095336/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.309796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.589525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.553787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715420 SAMN22558364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095337/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.960617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.108818 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.418815 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715421 SAMN22558425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095340/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.947835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.540316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.765279 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715422 SAMN22558424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095341/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.860794 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.542106 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.477999 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715423 SAMN22558094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095343/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.891599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.860759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.715336 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715424 SAMN22559249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210095344/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.23677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.901299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.655718 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715425 SAMN22558093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095345/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.584263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.394949 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.374847 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715426 SAMN22558363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095346/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.851476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.86827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.161902 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715427 SAMN22558034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095348/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.96459 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.34361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.91883 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715428 SAMN22558033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095349/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.490301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.574577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.947226 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715429 SAMN22560057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095350/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.503498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.4381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.896692 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715430 SAMN22557921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095351/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.390293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.583677 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.796175 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715431 SAMN22557920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095352/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.9584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.79019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.115522 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715432 SAMN22557919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095353/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.30494 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.276031 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.531691 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715433 SAMN22557918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095354/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.872444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.63564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.40504 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715434 SAMN22557340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095356/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.724463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.421133 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.669453 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715435 SAMN22557917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095358/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.715279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.272893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.750812 lineage/clade name AY.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715436 SAMN22557155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095359/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7712336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.174479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.175199 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715437 SAMN22558092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095360/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.839887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.700734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.433795 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715438 SAMN22558091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095361/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.226147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.699404 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.400928 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715439 SAMN22558296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210317400/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.428588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.748725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.373407 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715440 SAMN22558295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210317401/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.827803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.312069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.9131 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715441 SAMN22557538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317402/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.497778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.757536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.433 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715442 SAMN22557871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317403/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.787617 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.712984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.435442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715443 SAMN22557870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317404/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.174677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.432018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.540537 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715444 SAMN22557869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317405/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.743542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.646065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.438887 lineage/clade name AY.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715445 SAMN22557868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317406/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.975138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.496542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.448122 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715446 SAMN22557537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317407/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.070017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.4604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.929867 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715447 SAMN22560042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317408/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.45402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.601152 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.168802 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715448 SAMN22559190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210317409/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.064104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.712858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.565516 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715449 SAMN22558239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210317410/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.97178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.989578 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.664751 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715450 SAMN22557114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317411/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.70776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.607492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.44292 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715451 SAMN22559065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317412/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.464283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.020227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.666113 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715452 SAMN22557867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317413/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.457804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.143879 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.939089 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715453 SAMN22559064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317414/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.53251 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.748465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.779892 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715454 SAMN22559063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210317415/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.234818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.978102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.629347 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715455 SAMN22559189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210317416/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.446495 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.00058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.827663 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715456 SAMN22557866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210317417/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.259699 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.889046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.585402 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715457 SAMN22560041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317418/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.728651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.093763 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.69155 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715458 SAMN22560040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317419/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.852323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.244061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.729007 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715459 SAMN22558082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210317420/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.843001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.19287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.6525345 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715460 SAMN22558887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317421/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.473315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.567959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.352153 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715461 SAMN22558997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210317422/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.202198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.645158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.659542 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715462 SAMN22558996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210317423/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.550085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.79038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.6188 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715463 SAMN22558317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210317424/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.37667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.727474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.197235 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715464 SAMN22556797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210317425/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.16769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.650229 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.265066 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715465 SAMN22557113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317426/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.333818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.465475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.228546 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715466 SAMN22557112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317427/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.030214 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.405937 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.08833 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715467 SAMN22557111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317428/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.886404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.926975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.73115 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715468 SAMN22559996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210317429/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.695618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.595651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.977267 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715469 SAMN22559995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210317430/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.825792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.248318 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.622223 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715470 SAMN22558169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317431/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.724583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.505402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.599723 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715471 SAMN22557536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317432/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.204742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.358438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.129166 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715472 SAMN22558168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317433/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.307421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.173066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.961504 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715473 SAMN22557535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317434/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.532907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.869379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.763788 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715474 SAMN22558167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317435/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.220736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.766201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.226566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715475 SAMN22558166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317436/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.422697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.666811 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.225937 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715476 SAMN22557534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317438/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.607527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.508888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.73239 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715477 SAMN22558165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317437/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.607843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.268267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.11247 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715478 SAMN22558886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317439/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.685692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.362354 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.347635 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715479 SAMN22559188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210317440/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.411941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.636055 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.568479 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715480 SAMN22558885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317443/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.255224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.840588 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.541025 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715481 SAMN22559910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317442/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.224003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.125975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.761759 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715482 SAMN22557666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210317444/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.28717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.369384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.853085 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715483 SAMN22557665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210317445/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.93387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.17923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.619165 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715484 SAMN22557664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210317446/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.924524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.006918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.409613 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715485 SAMN22557663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210317447/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.831522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.853851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.64143 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715486 SAMN22557662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210317448/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.450373 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.774837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.540956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715487 SAMN22557661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210317449/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.746911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.945504 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.183119 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715488 SAMN22559909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317451/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.840616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.564754 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.34314 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715489 SAMN22559908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317453/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.848007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.615221 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.263329 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715490 SAMN22557110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317456/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.01896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.732067 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.152178 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715491 SAMN22558164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317457/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.62371 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.926353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.986465 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715492 SAMN22558163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317458/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.680452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.687376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.902662 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715493 SAMN22557407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210317479/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.600685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.294838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.643969 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715494 SAMN22557715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317480/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.082909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.74708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.740345 lineage/clade name AY.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715495 SAMN22558884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317481/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.178541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.976936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.903089 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715496 SAMN22558883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317482/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.46004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.203419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.455212 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715497 SAMN22559187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210317484/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.203485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.106256 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.468437 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715498 SAMN22556887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317485/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.171278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.868071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.656373 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715499 SAMN22556886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210319057/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.897844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.182701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.10128 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715500 SAMN22556885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210319058/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.344519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.396767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.21553 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715501 SAMN22558162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210319059/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.32531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.983428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.655265 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715502 SAMN22557400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335763/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.385239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.154346 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.319305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715503 SAMN22556884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210319436/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.228106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.917353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.649755 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715504 SAMN22557399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335764/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.448667 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.724865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.856099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715505 SAMN22558874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210335765/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.79264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.586214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.763063 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715506 SAMN22557854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210335766/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.104017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.523537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.938656 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715507 SAMN22557770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210335767/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.512083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.922164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.773142 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715508 SAMN22558147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335768/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.9955015 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.684632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.665354 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715509 SAMN22558146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335769/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.52584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.435589 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.69503 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715510 SAMN22558145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335770/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.151809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.558842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.930112 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715511 SAMN22559900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335771/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.775793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.41699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.946709 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715512 SAMN22559899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335772/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.558546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.660894 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.455357 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715513 SAMN22559180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335773/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.877555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.818622 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.48616 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715514 SAMN22559179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335774/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.409264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.749867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.65582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715515 SAMN22559178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335775/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.390064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.335684 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.651814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715516 SAMN22557453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335777/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.718033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.502995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.734798 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715517 SAMN22558401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335778/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.730816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.028782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.282888 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715518 SAMN22558399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335780/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.313038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.893655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.92512 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715519 SAMN22558400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335779/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.723401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.468015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.641913 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715520 SAMN22557521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335781/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.637627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.530459 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.4080305 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715521 SAMN22557398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335783/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.90453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.167398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.780277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715522 SAMN22557520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335782/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.7776375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.277543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.854172 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715523 SAMN22559177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335784/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.289976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.84241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.459614 lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715524 SAMN22559176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335786/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.9588 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.294075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.876827 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715525 SAMN22557452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335787/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.285421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.857365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.980901 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715526 SAMN22557451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335788/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.959465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.152464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.591082 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715527 SAMN22557450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335789/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.496574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.167326 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.906973 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715528 SAMN22559043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335791/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.322665 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.41833 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.160478 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715529 SAMN22559044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335790/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.985744 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.538368 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.965742 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715530 SAMN22559040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335795/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.754484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.448814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.301542 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715531 SAMN22559042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335793/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.797657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.944519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.039026 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715532 SAMN22559041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335794/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.21873 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.950474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.049372 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715533 SAMN22559175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335797/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.42019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.514076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.71603 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715534 SAMN22559039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335796/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.398953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.660102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.2002125 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715535 SAMN22558276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210374439/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.653277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.312718 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.69245 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715536 SAMN22559236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210374440/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.778906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.89216 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.351463 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715537 SAMN22557389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210374442/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.641499 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.068914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.739735 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715538 SAMN22559235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210374441/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.102727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.981255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.597803 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715539 SAMN22557388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210374443/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.704864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.73194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.416323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715540 SAMN22558066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210374444/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.404474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.419397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.266596 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715541 SAMN22558065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210374445/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.151993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.527748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.259812 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715542 SAMN22558063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210374447/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.884185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.496726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.6763735 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715543 SAMN22558064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210374446/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.015785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.527128 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.667421 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715544 SAMN22557063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210374449/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.960781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.774996 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.283457 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715545 SAMN22559031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210374450/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.155278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.996861 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.863361 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715546 SAMN22558062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210374448/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.609127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.6640835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.959232 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715547 SAMN22559158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210374451/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.790384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.762156 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.189482 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715548 SAMN22559156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210374456/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.133598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.368927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.441227 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715549 SAMN22559030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210374457/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.328173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.075779 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.671362 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715550 SAMN22559157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210374452/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.283003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.354568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.211006 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715551 SAMN22557393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210374458/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.953409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.498983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.11817 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715552 SAMN22558000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210374460/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.605921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.301137 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.708718 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715553 SAMN22559155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210374461/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.242579 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.506824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.461712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715554 SAMN22556872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210374462/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.139171 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.621086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.474242 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715555 SAMN22556871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210374463/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.686428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.949123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.78927 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715556 SAMN22556870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210374464/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.584272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.979746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.7947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715557 SAMN22557703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210374465/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.64991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.486298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.833307 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715558 SAMN22557062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210374467/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.062532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.910542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.015537 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715559 SAMN22557061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210374468/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.933912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.45604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.775402 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715560 SAMN22557702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210374466/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.475218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.658478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.474798 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715561 SAMN22558231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210374473/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.853064 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.845394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.389404 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715562 SAMN22557059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210374470/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.415573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.897547 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.69573 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715563 SAMN22558232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210374472/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.722708 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.421564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.944715 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715564 SAMN22557060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210374469/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.852483 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.881708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.301429 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715565 SAMN22557301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375612/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.379112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.02249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.719841 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715566 SAMN22559029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210374476/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.727804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.647501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.361874 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715567 SAMN22557302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375611/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.742544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.418205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.507748 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715568 SAMN22558230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210374475/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.676004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.051425 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.71953 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715569 SAMN22559973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210375613/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.602721 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.757492 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.258411 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715570 SAMN22559140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375616/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.692621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.757517 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.68162 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715571 SAMN22559141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375614/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.402466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.99534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.145727 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715572 SAMN22559138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375619/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.172827 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.49743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.63623 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715573 SAMN22559139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375617/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.8395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.794134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.430162 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715574 SAMN22559137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210375620/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.326479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.35375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.979536 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715575 SAMN22558274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210375621/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.64093 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.531757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.940695 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715576 SAMN22557698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375624/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.853833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.475105 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.019112 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715577 SAMN22557700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375622/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.2291 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.891808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.565742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715578 SAMN22556869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210375625/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.22529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.731104 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.44765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715579 SAMN22557699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375623/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.253645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.048073 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.635752 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715580 SAMN22557697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375626/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.595127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.39554 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.822489 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715581 SAMN22557696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375627/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.3655405 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.711772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.278436 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715582 SAMN22557695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375628/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.522608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.093744 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.618248 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715583 SAMN22557694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375629/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.349562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.690637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.260216 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715584 SAMN22558339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210375630/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.286133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.018587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.792532 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715585 SAMN22558871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375631/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.006968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.985857 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.160297 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715586 SAMN22560034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375632/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.848768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.797934 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.323956 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715587 SAMN22560032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375634/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.09085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.787651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.26501 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715588 SAMN22560033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375633/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.767738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.371998 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.225657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715589 SAMN22560031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375635/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.493973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.21867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.54689 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715590 SAMN22558129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375636/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.569576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.405437 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.224504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715591 SAMN22558128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375637/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.507654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.82475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.638765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715592 SAMN22558126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375639/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.94742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.80468 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.313658 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715593 SAMN22558127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375638/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.909815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.699644 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.518036 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715594 SAMN22558125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375640/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.46519 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.472158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.321272 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715595 SAMN22558124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375641/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.102475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.560821 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.4799385 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715596 SAMN22558123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375642/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.817208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.842715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.606608 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715597 SAMN22557632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210375643/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.736063 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.420567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.4504 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715598 SAMN22557631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210375644/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.437855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.02616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.74307 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715599 SAMN22557250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379452/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.275972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.000767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.580902 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715600 SAMN22557249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379453/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.92741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.50656 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.684134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715601 SAMN22557251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379451/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.332888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.654165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.03659 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715602 SAMN22557248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379454/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.51615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.3848 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.402737 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715603 SAMN22557247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379455/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.961645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.770277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.522705 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715604 SAMN22557246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379456/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.368149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.88071 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.39261 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715605 SAMN22557244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379458/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.382595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.279379 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.98443 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715606 SAMN22557245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379457/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.86696 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.341919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.262037 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715607 SAMN22557243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379459/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.853989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.741585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.652132 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715608 SAMN22557242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379460/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.58181 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.353652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.503362 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715609 SAMN22557241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379462/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.181939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.687233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.97913 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715610 SAMN22559015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210379461/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.621479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.72332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.89317 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715611 SAMN22557240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379463/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.197895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.762661 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.248922 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715612 SAMN22557238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379465/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.536005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.113808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.382101 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715613 SAMN22557237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379466/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.444069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.883649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.524733 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715614 SAMN22557239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379464/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.447855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.498389 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.172076 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715615 SAMN22558957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210379469/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source NP Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.54309 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.22002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.664322 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715616 SAMN22557236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379467/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.010689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.069017 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.907208 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715617 SAMN22557235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379470/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.31629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.07853 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.659214 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715618 SAMN22557234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379471/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.330717 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.611826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.523735 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715619 SAMN22557231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379474/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.584814 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.353205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.5982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715620 SAMN22557230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379475/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.131105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.334403 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.252798 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715621 SAMN22557233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379472/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.330408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.489048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.790857 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715622 SAMN22557232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379473/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.087287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.146966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.399996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715623 SAMN22557229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379477/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.3701515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.356695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.732392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715624 SAMN22557228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210379478/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.624866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.698298 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.985003 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715625 SAMN22557982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380026/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.782043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.22443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.613647 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715626 SAMN22557981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380028/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.799254 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.590682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.826392 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715627 SAMN22559870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380031/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.629809 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.287043 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.693157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715628 SAMN22557659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210380034/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.380423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.00136 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.339303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715640 SAMN22557433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210380045/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.173581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.420232 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.169982 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715641 SAMN22556848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380046/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.105656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.629566 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.568254 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715642 SAMN22558848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380048/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.504435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.591211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.175205 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715643 SAMN22558847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380049/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9021435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.556859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.489889 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715629 SAMN22559869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380033/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.520647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.6874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.947073 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715630 SAMN22557038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380029/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.889514 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.600674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.947818 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715631 SAMN22559231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380036/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.971421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.821899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.524955 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715632 SAMN22557786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210380035/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.479243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.340085 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.526074 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715633 SAMN22559868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380037/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.246714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.175955 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.887335 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715634 SAMN22558989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380039/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.232412 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.377495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.198717 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715635 SAMN22558113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210380040/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-28 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.886488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.422794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.317461 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715636 SAMN22558382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210380041/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.18774 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.506008 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.981163 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715637 SAMN22559867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210380042/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.280268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.647705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.608196 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715638 SAMN22558988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380043/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.650274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.348125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.104443 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715639 SAMN22557434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210380044/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.100737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.746688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.309883 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715644 SAMN22558381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210380050/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.617385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.404553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.518841 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715645 SAMN22559229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380053/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.58428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.50025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.886515 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715646 SAMN22559230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380052/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.828176 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.308939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.114811 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715647 SAMN22557624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210380051/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.646842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.147943 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.658355 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715648 SAMN22557757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210380054/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.523752 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.427973 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.838676 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715649 SAMN22558331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380055/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.534584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.797377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.535122 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715650 SAMN22558330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380056/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.386145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.900322 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715651 SAMN22558329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380058/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.571335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.576572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.01122 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715652 SAMN22558846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380057/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.72448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.998774 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.75079 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715653 SAMN22558328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210380059/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.566468 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.404869 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.388142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715654 SAMN22558225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380060/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.992739 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.61888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4423685 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715655 SAMN22556847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380061/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.562975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.155241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.574783 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715656 SAMN22557037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380062/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.518297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.741549 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.088758 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715657 SAMN22557036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380063/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.4442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.61377 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.783329 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715658 SAMN22556846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380064/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.56621 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.992485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.333012 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715659 SAMN22556844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380066/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.266815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.460375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.938261 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715660 SAMN22556843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380067/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.991393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.547306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.243298 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715661 SAMN22556842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380068/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.009895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.408477 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.314001 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715662 SAMN22557381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210092592/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.11703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.142808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.680944 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715663 SAMN22558109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210092450/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.924047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.81281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.225262 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715664 SAMN22557622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210092640/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.888037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.716052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.360263 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715665 SAMN22558108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210092643/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.28738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.1641655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.716146 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715666 SAMN22560073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210092645/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.714146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.240784 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.6709 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715667 SAMN22557743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210092652/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.2798014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.176141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.155754 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715668 SAMN22557621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210092680/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.092658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.294789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.55393 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715669 SAMN22557953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210092682/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.50356 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.289864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.961262 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715670 SAMN22558313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210092689/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.835115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.283895 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.044352 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715671 SAMN22558312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210092690/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.777269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.130418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.43597 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715672 SAMN22558107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210092697/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.914336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.672713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.272476 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715673 SAMN22556970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210092709/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.936832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.046993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.719316 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715674 SAMN22557380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093062/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.147118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.88795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.664967 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715675 SAMN22557379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093065/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.798742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.062151 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.264755 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715676 SAMN22557377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093073/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.859521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.306186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.185365 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715677 SAMN22557378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210093067/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.428846 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.681675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.21914 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715678 SAMN22557742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210093085/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.759792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.802898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.525642 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715679 SAMN22556969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093087/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.634537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.35226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.233917 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715680 SAMN22558255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210093096/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.291069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.278652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.111336 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715681 SAMN22556968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093088/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.924973 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.323515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.782906 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715682 SAMN22559216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210093100/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.762917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.388248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.299837 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715683 SAMN22559215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210093101/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.489763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.828304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.860586 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715684 SAMN22558254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210093146/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.938273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.732612 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.888179 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715685 SAMN22559214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210093147/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.33477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.823639 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.680714 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715686 SAMN22558253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210093148/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.58943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.486364 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.880277 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715687 SAMN22557952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093376/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.966364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.512985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.35374 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715688 SAMN22557481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210093392/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.810536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.000396 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.6994 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715689 SAMN22557620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210093389/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.7415905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.765858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.68777 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715690 SAMN22557951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093377/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.68635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.614388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.664253 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715691 SAMN22557480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210093393/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.417328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.550897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.014416 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715692 SAMN22559109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210093395/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.938076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.159153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.404013 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715693 SAMN22558106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210093396/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.4657955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.430852 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.76696 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715694 SAMN22559960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210094760/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.179335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.860058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.503561 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715695 SAMN22559859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094761/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.704498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.843178 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.218843 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715696 SAMN22558307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210094762/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.988615 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.466076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.942116 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715697 SAMN22558306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210094763/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.260925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.664843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.6881 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715698 SAMN22558833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094764/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.642018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.890834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.727807 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715699 SAMN22558832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094765/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.630962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.594432 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.602007 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715700 SAMN22558831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094766/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.679594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.145304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.217072 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715701 SAMN22558830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094767/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.971052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.098606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.912401 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715702 SAMN22557367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094768/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.700269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.735747 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.878103 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715703 SAMN22559203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094769/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.871027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.175188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.435524 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715704 SAMN22558045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210094770/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.260256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.548541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.134529 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715705 SAMN22557006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210094771/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.886404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.291859 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.102669 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715706 SAMN22557005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210094772/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.18257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.164127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.608505 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715707 SAMN22559221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DC-CDC-ASC210094773/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.43884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.867976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.363795 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715708 SAMN22557185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094774/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.819225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.740542 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.763973 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715709 SAMN22557184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094775/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.187735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.776434 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.756424 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715710 SAMN22557004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210094776/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.325642 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.880552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.488457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715711 SAMN22558105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210094777/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.142448 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.811394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.924082 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715712 SAMN22557183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094778/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.946037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.916231 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.416862 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715713 SAMN22557182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094779/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.788734 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.432976 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.687092 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715714 SAMN22558104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210094780/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.540493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.63347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.156487 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715715 SAMN22558305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210094781/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.213778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.669283 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.217918 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715716 SAMN22559202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094782/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.981813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.66026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.510683 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715717 SAMN22559201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094783/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.956871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.53035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.699474 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715718 SAMN22557431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210094784/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.776894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.87248 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.685955 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715719 SAMN22557599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094785/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.599208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.10331 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.950166 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715720 SAMN22557598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094786/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.295317 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.0102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.581926 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715721 SAMN22557597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094787/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.053564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.390228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.582354 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715722 SAMN22557596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094788/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.85411 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.210005 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.318246 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715723 SAMN22558366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095186/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.981925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.429912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.776671 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715724 SAMN22558365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095187/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.896889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.654249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.809223 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715725 SAMN22557579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095188/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.744919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.77584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.667727 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715726 SAMN22556933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095189/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.757706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5192585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.776563 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715727 SAMN22556932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095190/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.992401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.992977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.757445 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715728 SAMN22556931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095191/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.723822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.874435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.556067 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715729 SAMN22556930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095192/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.5692835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.658048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.428278 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715730 SAMN22556929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095193/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.786576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.411514 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.390627 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715731 SAMN22556928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095194/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.907783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.820698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.363803 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715732 SAMN22558250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095195/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.576065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.780062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.219015 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715733 SAMN22558249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095196/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.099829 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.616789 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.191317 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715734 SAMN22556927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095200/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.005954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.629242 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.368651 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715735 SAMN22556926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095201/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.236276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.575275 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.386734 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715736 SAMN22556925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095202/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 31.453354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.143795 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715737 SAMN22559078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095203/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.737906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.347664 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.34218 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715738 SAMN22556924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095204/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.696281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.742798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.661389 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715739 SAMN22556923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095205/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.25153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.684527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.83511 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715740 SAMN22556922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095206/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.188832 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.381325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.506673 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715741 SAMN22556921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095207/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.857132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.787449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.240423 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715742 SAMN22559940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095545/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.236858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.407627 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.795137 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715743 SAMN22556986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095548/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.280428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.797897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.522402 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715744 SAMN22557915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095549/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.374397 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.860308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.384003 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715745 SAMN22557914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095550/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.706741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.871046 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.108343 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715746 SAMN22557913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095551/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.805746 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.250593 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.897552 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715747 SAMN22557912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095552/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.942312 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.273655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.887439 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715748 SAMN22557911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095553/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.800024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.316723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.943604 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715749 SAMN22557910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095554/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.958132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.473164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.057264 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715750 SAMN22557909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095555/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.819207 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.863247 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.41007 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715751 SAMN22556985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095556/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.301567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.578587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.408983 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715752 SAMN22556984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095557/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.521769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.46146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.414341 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715753 SAMN22557908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095558/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.47571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.924816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.542368 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715754 SAMN22557907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095559/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.451183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.37523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.152117 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715755 SAMN22557906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095560/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.213404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.823093 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.484516 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715756 SAMN22557905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095561/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.397564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.40866 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.00977 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715757 SAMN22556812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095562/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.593132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.073989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.493201 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715758 SAMN22556811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095563/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.512821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.409952 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.003216 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715759 SAMN22556810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095564/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.92648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.903465 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.296173 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715760 SAMN22558320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210095565/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.298248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.26365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.935074 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715761 SAMN22557328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095566/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.702355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.303169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.6461315 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715762 SAMN22558319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210095567/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.789747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.516682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.79192 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715763 SAMN22556983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095568/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.822767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.699419 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.458904 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715764 SAMN22557904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095569/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.706451 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.886793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.51988 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715765 SAMN22557903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095570/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.191713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.62652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.504518 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715766 SAMN22557902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095571/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.167001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.1367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.818601 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715767 SAMN22557901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095572/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.359777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.341003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715768 SAMN22557900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095573/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.820663 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.883974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.529331 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715769 SAMN22557899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095574/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.784645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.665169 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.633238 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715770 SAMN22556809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095575/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.17917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.263463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.704373 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715771 SAMN22556808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095576/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.328315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.553062 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.264471 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715772 SAMN22556806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095578/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.888496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.59182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.344286 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715773 SAMN22556807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095577/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.585577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.419077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.983324 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715774 SAMN22559104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094072/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.821718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.076124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.56219 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715775 SAMN22559103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094073/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.38472 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.972134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.383957 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715776 SAMN22557187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094075/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.172394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.854797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.483747 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715777 SAMN22559209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210094076/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.244017 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.699076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.246521 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715778 SAMN22557739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094077/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.706455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.860489 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.473171 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715779 SAMN22557738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094078/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.44703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.912254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.620456 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715780 SAMN22559102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094079/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.623222 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.16808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.82526 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715781 SAMN22559101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094080/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.428555 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.553392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.626581 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715782 SAMN22557186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210094081/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.274942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.979989 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.340799 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715783 SAMN22557619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094113/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.715462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.747898 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.654127 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715784 SAMN22557618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094114/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.771307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.846235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.470418 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715785 SAMN22557617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094115/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.346362 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.209809 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.64039 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715786 SAMN22558252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210094116/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.707656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.910184 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.795761 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715787 SAMN22558251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210094117/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.445496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.495007 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.262894 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715788 SAMN22559224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CT-CDC-ASC210094118/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.265491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.44569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.301619 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715789 SAMN22558370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210094119/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.286297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.503452 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.410072 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715790 SAMN22558369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210094120/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.994865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.733856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.23956 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715791 SAMN22559862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210094121/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.194868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.64776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.581429 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715792 SAMN22558837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094122/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.839561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.476822 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.636965 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715793 SAMN22557616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094124/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.239521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.189325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.311071 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715794 SAMN22558836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094123/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.846963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.966553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6156025 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715795 SAMN22558835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094125/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.9613085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.377079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.020708 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715796 SAMN22558213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094126/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.432257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.512487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.30704 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715797 SAMN22558212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094127/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.643152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.18824 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.114565 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715798 SAMN22557615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094128/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.448357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.53142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.993729 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715799 SAMN22557650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210094129/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.402394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.281392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.180778 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715800 SAMN22558950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094130/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.549567 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.133683 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.810134 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715801 SAMN22558949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094131/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.716192 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.881954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.918299 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715802 SAMN22558948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094132/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.249964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.650303 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.570982 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715803 SAMN22558211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094134/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.151987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.384065 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.659666 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715804 SAMN22557614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094135/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.425213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.952564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.49395 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715805 SAMN22558210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094137/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.3234167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.821712 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 6.6915073 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715806 SAMN22556805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095579/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.705055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.282454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.637396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715807 SAMN22556804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210095580/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.794092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.331246 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.243998 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715808 SAMN22559938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095586/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.871477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.794817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.985384 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715809 SAMN22559939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095584/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.697378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.559743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.769873 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715810 SAMN22559937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095588/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.418701 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.520842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.21827 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715811 SAMN22559936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095589/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.774515 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.493948 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.522528 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715812 SAMN22559935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095590/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.955675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.93651 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.79551 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715813 SAMN22559934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095591/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.708939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.73577 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.990175 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715814 SAMN22557327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095592/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.157383 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.203012 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.146955 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715815 SAMN22559933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095593/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.37065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.55571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.681942 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715816 SAMN22559932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095595/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.672951 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.486502 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.856276 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715817 SAMN22559931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095596/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.027777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.518082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.275238 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715818 SAMN22558419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095597/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.670513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.913874 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.650742 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715819 SAMN22559929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095600/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.36407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.805984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.409212 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715820 SAMN22559930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095599/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.96548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.14234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.207023 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715821 SAMN22557326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210095598/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.592521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.539594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.538396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715822 SAMN22559928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095601/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.266224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.417887 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.951517 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715823 SAMN22559927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095602/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.612527 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.985003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.395337 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715824 SAMN22559926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095603/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.144796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.153519 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.989745 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715825 SAMN22557562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095604/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.894264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.531674 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.271982 lineage/clade name AY.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715826 SAMN22557559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095609/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.875577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.571109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.395158 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715827 SAMN22557560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095607/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.992038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.925572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.388551 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715828 SAMN22557561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095605/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.28614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.451548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.284975 lineage/clade name AY.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715829 SAMN22557557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095611/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.21853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.687307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.865103 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715830 SAMN22557558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210095610/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.526496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.208604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.904594 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715831 SAMN22558915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095614/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.2556 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.780003 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.182083 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715832 SAMN22557727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210095612/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.201551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.639309 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.089802 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715833 SAMN22557726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210095613/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.334383 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.867153 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.796635 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715834 SAMN22558914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095615/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.619077 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.344991 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.8959055 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715835 SAMN22558362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095616/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.713025 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.180183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.378206 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715836 SAMN22558361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095617/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.852634 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.551086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.95505 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715837 SAMN22558360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095618/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.97504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.849756 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.66773 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715838 SAMN22557455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210334705/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.98727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.830185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.008644 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715839 SAMN22559988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210334708/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.271648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.648198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.806396 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715840 SAMN22557456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210334704/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.693003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.311357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.394834 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715841 SAMN22559989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210334706/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.424342 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.206428 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.740175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715842 SAMN22558152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210334730/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.508991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.66766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.630394 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715843 SAMN22557323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210334718/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.456234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.112724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.919409 lineage/clade name AY.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715844 SAMN22557856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334739/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.167019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.709667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.220074 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715845 SAMN22557857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334736/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.34711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.795479 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.871492 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715846 SAMN22557322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335014/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.425518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.113454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.740595 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715847 SAMN22559053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335012/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.36946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.386112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.695293 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715848 SAMN22559054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335011/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.0153675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.209867 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.83157 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715849 SAMN22557320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335027/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.25213 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.841983 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.702493 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715850 SAMN22557321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335021/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.272364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.456556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.727118 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715851 SAMN22558375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210335039/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.664174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.8826885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.195922 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715852 SAMN22558005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210335038/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.011374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.70099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.451413 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715853 SAMN22557403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335049/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.383984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.699715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.645409 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715854 SAMN22557855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210335046/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.579811 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.637464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.57918 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715855 SAMN22557081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335047/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.706327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.46633 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.1752 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715856 SAMN22557402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335059/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.345228 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.8162 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.752285 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715857 SAMN22559183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335054/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.28664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.954678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.078505 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715858 SAMN22559240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210335067/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.48961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.735582 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.400959 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715859 SAMN22559238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210335069/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.184359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.342728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.875765 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715860 SAMN22558004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210335073/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.558323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.662374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.295923 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715861 SAMN22559239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210335068/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.633636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.740408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.843163 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715862 SAMN22558238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210335074/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.347574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.743795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.296154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715863 SAMN22557080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335071/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.4484005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.792438 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.390233 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715864 SAMN22558237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210335075/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.795504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.60842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.303898 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715865 SAMN22557524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335078/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.85343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.475487 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.35986 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715866 SAMN22556881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335081/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.464895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.722551 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.102391 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715867 SAMN22558003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210335083/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.861355 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.446945 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.345842 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715868 SAMN22556880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335088/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.367039 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.629227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.586447 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715869 SAMN22557523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335092/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.89446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.426476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.923103 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715870 SAMN22557613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094138/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.216728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.409416 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.201668 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715871 SAMN22558947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094139/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.99648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.662537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.65761 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715872 SAMN22559099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094143/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.98138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.791584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.51883 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715873 SAMN22559100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094141/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.288841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.455025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.576303 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715874 SAMN22557612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094142/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.384748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.823347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.642221 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715875 SAMN22558946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094140/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.239212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.933716 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.55028 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715876 SAMN22558945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094144/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.604711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.6033325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.829583 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715877 SAMN22559098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094145/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.891576 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.245534 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.901712 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715878 SAMN22559097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210094146/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.627231 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.87145 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.606878 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715879 SAMN22558943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094148/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.913627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.226119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.789814 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715880 SAMN22558944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094147/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.834144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.266129 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.642505 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715881 SAMN22556835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094149/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.380266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.468325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.479275 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715882 SAMN22558942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094150/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.045788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.1978655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.693176 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715883 SAMN22557611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094151/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.257736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.20757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.472718 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715884 SAMN22556993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210094152/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.549032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.554217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.166349 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715885 SAMN22557372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094153/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.35697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.558739 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.474195 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715886 SAMN22557942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094154/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.791636 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.25826 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.26088 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715887 SAMN22556834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094156/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.353575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.754776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.739009 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715888 SAMN22556833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094159/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.51427 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.725039 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.822006 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715889 SAMN22557371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094158/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.436764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.842803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.252158 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715890 SAMN22557610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094160/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.676125 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.903316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.815664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715891 SAMN22557370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094161/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.68574 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.515839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.461673 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715892 SAMN22557941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094163/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.841578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.562994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.960078 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715893 SAMN22556832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094164/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.614979 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.021954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.861603 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715894 SAMN22556831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210094166/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.553764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.27507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.20478 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715895 SAMN22557369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210094165/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.591972 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.471815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.71833 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715896 SAMN22558941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094169/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.196821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.656513 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.42624 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715897 SAMN22558940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094170/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.039932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.465666 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.556734 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715898 SAMN22558209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094171/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.275949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.262846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.724268 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715899 SAMN22558939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094172/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.858784 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.026917 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.208027 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715900 SAMN22558208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094174/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.369121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.568604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.528141 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715901 SAMN22558359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095619/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.633259 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.388695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.702497 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715902 SAMN22556952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210094173/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.323072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.627844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.636017 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715903 SAMN22558357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095621/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.62052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.631112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.723651 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715904 SAMN22558358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095620/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.670961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.697228 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.97651 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715905 SAMN22558356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095622/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.941416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.999842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.034912 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715906 SAMN22558913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095623/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.630234 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.99501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.75867 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715907 SAMN22558912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095624/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.382153 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.0081415 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.530074 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715908 SAMN22559077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095625/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.803323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.450173 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.327889 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715909 SAMN22559076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095626/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.724428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.982855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.872555 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715910 SAMN22559075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095627/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.281084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.512417 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.99024 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715911 SAMN22559074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095628/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.43282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.717302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.624546 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715912 SAMN22559073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095629/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.63284 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.919455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.678795 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715913 SAMN22559198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095632/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.554198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.317896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.158469 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715914 SAMN22559072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095630/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.047003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.296436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.251163 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715915 SAMN22558300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095634/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.886693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.799374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.347876 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715916 SAMN22558301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095633/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.276295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.19375 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.373505 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715917 SAMN22558297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095637/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.3926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.84615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.552582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715918 SAMN22558298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095636/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.975262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.977476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.673216 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715919 SAMN22559197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095638/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.84328 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.584736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.34275 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715920 SAMN22558299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210095635/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.703955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.533411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.838356 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715921 SAMN22559196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095640/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.951656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.191715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.104094 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715922 SAMN22558417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095641/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.36876 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.92072 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.187373 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715923 SAMN22558418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095639/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.37785 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.555307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.503622 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715924 SAMN22559997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210095643/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.39899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.380704 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.758789 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715925 SAMN22559195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210095642/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.9495325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.612543 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.901729 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715926 SAMN22557725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210095644/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.329376 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.72992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.248459 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715927 SAMN22557724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210095646/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.417626 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.69286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.164027 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715928 SAMN22557723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210095647/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.86271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.737482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.395702 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715929 SAMN22557897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095745/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.557518 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.224182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.81168 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715930 SAMN22557146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095746/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.339572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.302343 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.19108 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715931 SAMN22557898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095744/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.990713 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.437366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.319834 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715932 SAMN22557145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095747/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.551552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.537302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.227198 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715933 SAMN22557522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335093/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.541607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.53069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.18174 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715934 SAMN22558085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095749/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.765965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.138649 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.267184 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715935 SAMN22559182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335109/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.721441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.423092 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.549122 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715936 SAMN22558081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335111/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.270651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.462831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.232316 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715937 SAMN22558347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335115/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.383323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.970698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.035041 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715938 SAMN22557079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335120/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.567123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.012663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.804497 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715939 SAMN22558150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335121/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.539442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.790443 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.29536 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715940 SAMN22558151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335119/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.27539 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.905048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.696402 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715941 SAMN22558345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335124/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.688945 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.525896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.201888 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715942 SAMN22558346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335123/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.171692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.83788 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.542212 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715943 SAMN22558149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335125/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.592834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.871277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.222063 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715944 SAMN22558970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335354/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.528385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.980875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.411469 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715945 SAMN22558403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335127/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.989573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.565567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.46473 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715946 SAMN22556796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210335374/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.426212 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.033188 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.558939 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715947 SAMN22559052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335405/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.422346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.98893 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.156322 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715948 SAMN22559902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335655/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.970407 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.477595 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.845187 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715949 SAMN22557078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335654/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.323053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.475302 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.319054 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715950 SAMN22558148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335409/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.779517 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.836185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.575861 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715951 SAMN22559051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335696/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.235899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.926943 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.291523 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715952 SAMN22558969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335694/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.890224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.138077 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.25193 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715953 SAMN22557454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210335697/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.645045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.693629 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.365996 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715954 SAMN22559050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335701/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.334112 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.403307 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.80933 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715955 SAMN22557475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210335699/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.423191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.888758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.275713 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715956 SAMN22559048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335712/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.713694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.156943 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.262569 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715957 SAMN22557077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335714/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.922666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.8055315 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.240392 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715958 SAMN22559049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335706/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.093826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.454603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.435703 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715959 SAMN22557644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210335705/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.509132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.142473 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.28078 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715960 SAMN22557076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335715/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.919092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.238817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.438017 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715961 SAMN22557401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335723/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source NP Swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.59544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.355623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.252104 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715962 SAMN22559987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210335725/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.058043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.539636 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.651461 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715963 SAMN22558080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335726/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.432416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.344997 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.644713 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715964 SAMN22558079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335728/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.228174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.968052 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.458405 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715965 SAMN22558078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335729/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.003859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.580435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.819609 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715966 SAMN22557986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376524/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.431725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.487196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.837475 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715967 SAMN22557984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376527/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.347302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.702705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.174137 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715968 SAMN22557985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376526/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.385963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.617505 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.822209 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715969 SAMN22557983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376528/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.792338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.046263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.48199 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715970 SAMN22557683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376529/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.581041 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.45001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.316011 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715971 SAMN22557680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376532/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.41438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.35694 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.878258 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715972 SAMN22557679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376533/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.812191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.854485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.728388 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715973 SAMN22557681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376531/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.819323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.07895 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.772718 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715974 SAMN22557682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376530/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.532137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.896207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.157738 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715975 SAMN22557678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376534/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.787281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.055912 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.458193 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715976 SAMN22557677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376535/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.270283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.875536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.363651 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715977 SAMN22557675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376539/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.919584 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.966743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.007006 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715978 SAMN22557676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376536/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.096182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.273594 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.729192 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715979 SAMN22557041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376538/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.330511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.527699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.269142 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715980 SAMN22557673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376541/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.504726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.49896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.299103 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715981 SAMN22557672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376542/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.502219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.455135 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.210511 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715982 SAMN22557674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376540/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.163452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.305161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.9948845 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715983 SAMN22556850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210376543/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.577505 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.227863 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.911154 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715984 SAMN22558268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376544/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.958418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.662289 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.771569 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715985 SAMN22557284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210376546/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.223862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.488733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.846563 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715986 SAMN22558267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376545/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.909088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.442564 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.357582 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715987 SAMN22558266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376547/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.201018 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.87356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.773665 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715988 SAMN22557629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210376548/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.574729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.649705 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.912513 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715989 SAMN22557628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210376549/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.757798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.483197 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.641156 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715990 SAMN22557627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210376551/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.303316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.84834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.22146 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715991 SAMN22557671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376553/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.31043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.922569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.386182 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715992 SAMN22557670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376554/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.87895 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.99648 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.214577 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715993 SAMN22558265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376555/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.268951 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.479435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.591423 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715994 SAMN22558264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376556/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.401789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.927214 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.771812 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715995 SAMN22558263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376557/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.929387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.423525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.717937 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715996 SAMN22558262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376558/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.946836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.456299 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.428562 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715997 SAMN22558261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210376559/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.251799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.399523 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.017426 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715998 SAMN22557609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094177/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.562506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.918842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.953083 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10715999 SAMN22558046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210094176/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.222561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.913381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.00034 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716000 SAMN22557940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094175/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.408027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.085538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.93148 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716001 SAMN22557608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094178/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.47034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.377762 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.690298 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716002 SAMN22557467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210094179/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.13403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.597801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.91667 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716003 SAMN22557938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094181/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.843714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.01837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.347004 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716004 SAMN22557937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094182/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.91492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.818163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.862984 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716005 SAMN22557607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094183/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.846932 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.608215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.782244 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716006 SAMN22557939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210094180/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.922301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.779018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.505916 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716007 SAMN22557606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094184/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.503851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.607205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.559598 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716008 SAMN22557605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094185/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.03238 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.459734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.826876 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716009 SAMN22558207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094186/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.369919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.956446 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.579496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716010 SAMN22557736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094189/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.595747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.404758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.866087 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716011 SAMN22557737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094188/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.223038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.446306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.698403 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716012 SAMN22558206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094187/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 6.847684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.752177 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.146656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716013 SAMN22557735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094190/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.578656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.6555395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.230418 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716014 SAMN22558938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210094191/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.651688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.93993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.368721 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716015 SAMN22558205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094192/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.750359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.602467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.131372 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716016 SAMN22557604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094194/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.198551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.66397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.915031 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716017 SAMN22558204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210094193/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.184906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.683844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.837517 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716018 SAMN22557602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094196/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.30566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.317049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.375086 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716019 SAMN22557603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094195/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.304464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.225609 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.889659 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716020 SAMN22557734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094197/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.595781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.797625 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.30527 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716021 SAMN22558310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210094198/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.994768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.827808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.504242 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716022 SAMN22557600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094202/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.512346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.333292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.267683 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716023 SAMN22557733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094203/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.364239 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.793652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.473688 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716024 SAMN22557601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210094201/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.742943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.81884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.48395 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716025 SAMN22558309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210094204/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.61342 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.375488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.954857 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716026 SAMN22558308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210094205/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.721924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.480536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.679596 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716027 SAMN22558834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210094206/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.855638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.521697 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.181364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716028 SAMN22557649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210094207/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.753191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.166217 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.390108 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716029 SAMN22558084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095751/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.311688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.326272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.50035 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716030 SAMN22557732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210094208/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.27854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.634687 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.776817 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716031 SAMN22556906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095752/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.281227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.255817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.250612 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716032 SAMN22559925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095753/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.84072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.791847 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.887766 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716033 SAMN22556905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095754/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.9362955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.983025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.705343 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716034 SAMN22556903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095756/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.743792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.775011 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716035 SAMN22556982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095759/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.586899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.223402 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.224405 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716036 SAMN22556904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095755/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.483257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.166348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.53124 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716037 SAMN22559071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095762/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.011595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.931993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.325079 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716038 SAMN22557144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095765/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.970417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.914557 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.303244 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716039 SAMN22556981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095760/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.824596 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.722868 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.739437 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716040 SAMN22556980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095766/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.854988 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.422735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.617754 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716041 SAMN22556979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210095767/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.56781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.109676 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.657293 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716042 SAMN22559924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095768/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.200619 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.357994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.914114 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716043 SAMN22557658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210095769/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4082575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.22805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.421261 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716044 SAMN22559248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210095770/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.893858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.908478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.47205 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716045 SAMN22559247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210095771/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.76738 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.440918 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.06647 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716046 SAMN22557657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210095772/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.650747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.410086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.242441 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716047 SAMN22557656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210095773/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.857939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.494688 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.765547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716048 SAMN22557655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210095774/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.36773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.394794 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.897844 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716049 SAMN22558083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210095775/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.257782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.007361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.736965 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716050 SAMN22557722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210095777/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.044123 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.799361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.740455 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716051 SAMN22558355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210095779/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.724656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.105618 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.748765 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716052 SAMN22559070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210095780/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.29745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.081163 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.710684 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716053 SAMN22557896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095781/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.657091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.159084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.132414 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716054 SAMN22559246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210095784/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.425148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.87172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.882078 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716055 SAMN22557895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095782/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.960129 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.570251 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.002674 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716056 SAMN22560049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095785/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.377007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.30766 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.883121 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716057 SAMN22560048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095786/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.691906 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.380772 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.970774 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716058 SAMN22559923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210095787/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.775923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.670801 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.439491 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716059 SAMN22559185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210334608/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.541855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.506942 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.720563 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716060 SAMN22559059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334610/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.555033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.187304 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.011885 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716061 SAMN22558875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210334605/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.390316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.81109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.755033 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716062 SAMN22557860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334599/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.850357 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.7109165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.975816 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716063 SAMN22559058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334612/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.178719 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.57689 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.231083 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716064 SAMN22558376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210334615/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.970707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.900503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.282864 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716065 SAMN22558316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210334617/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.788977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.663967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.21821 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716066 SAMN22557089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334623/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.691536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.270695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.778548 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716067 SAMN22557773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210334622/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.21152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.251111 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.722413 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716068 SAMN22557088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334627/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.662737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.187323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.274582 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716069 SAMN22557859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334630/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.159532 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.347929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.22192 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716070 SAMN22557858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210334632/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.548504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.803223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.550646 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716071 SAMN22557660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210334628/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.095766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.438843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.280997 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716072 SAMN22558294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210334640/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.39302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.938211 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.66917 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716073 SAMN22557087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334644/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.663363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.182743 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.127163 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716074 SAMN22559057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334643/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.296815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.836572 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.011947 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716075 SAMN22557086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334646/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.978525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.27025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.421502 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716076 SAMN22557085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334669/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.117079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.147338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.403793 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716077 SAMN22556997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210334670/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source NP Swab geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.795824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.527668 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.654284 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716078 SAMN22557084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334671/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.400862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.651485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.122157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716079 SAMN22557967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210334676/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.506277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.683933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.532856 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716080 SAMN22559184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210334674/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.160383 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.797655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.403173 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716081 SAMN22557458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210334678/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.724026 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.960875 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.941949 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716082 SAMN22557654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210334679/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.786816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.751423 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.703328 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716083 SAMN22557083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334677/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.808193 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.413935 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.591984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716084 SAMN22557082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210334684/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.979476 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.954512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.390547 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716085 SAMN22559056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334690/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.79074 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.963673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.283224 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716086 SAMN22559903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210334680/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.949742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.24757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.624835 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716087 SAMN22557711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210334688/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.256354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.844388 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.637474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716088 SAMN22559055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210334693/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.55049 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.744068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.849962 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716089 SAMN22558006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210334702/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.172907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.922691 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.820978 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716090 SAMN22557457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210334703/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.217014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.554034 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.128676 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716091 SAMN22558137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335934/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.855541 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.485182 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.87468 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716092 SAMN22559167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335936/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.475441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.602708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.34584 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716093 SAMN22559168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335935/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.648594 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.662733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.982927 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716094 SAMN22559166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335938/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.263435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.821823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.516167 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716095 SAMN22559165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335939/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9874735 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.780115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.561908 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716096 SAMN22559164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335940/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.221416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.334236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.98262 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716097 SAMN22559163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335941/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.308469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.854469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.67664 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716098 SAMN22558136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335946/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.125386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.428796 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.976984 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716099 SAMN22559161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335944/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.875709 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.158469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.897383 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716100 SAMN22558393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335948/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.362599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.413645 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4875765 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716101 SAMN22559162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335943/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.151606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.304888 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.813528 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716102 SAMN22557308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335942/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.4353075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.488108 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.801806 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716103 SAMN22558392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335949/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.4545765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.5147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.849577 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716104 SAMN22557515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335951/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.262268 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.869823 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.952538 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716105 SAMN22557514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335952/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.964117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.894531 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.731537 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716106 SAMN22558391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335950/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.89389 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.533113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.712929 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716107 SAMN22558341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210335953/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.99037 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.605164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.859756 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716108 SAMN22557705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335955/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.183647 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.422539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.662645 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716109 SAMN22557069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335954/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.692707 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.787994 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.144477 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716110 SAMN22558135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335956/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.809072 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.670723 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.222279 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716111 SAMN22557068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335957/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.137085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.908454 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.583007 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716112 SAMN22558070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335958/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.321337 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.998775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.66526 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716113 SAMN22559896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335959/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.517983 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.217908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.145211 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716114 SAMN22559895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210335960/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.092836 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.590637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.347265 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716115 SAMN22558961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335963/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.31994 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.739164 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.61938 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716116 SAMN22558962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210335962/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.509348 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.358814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.880054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716117 SAMN22558068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335965/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.566654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.61495 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.163153 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716118 SAMN22558069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335964/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9445715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.502088 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.759714 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716119 SAMN22558067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210335966/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.332697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.058409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.578432 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716120 SAMN22557390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210335968/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.636091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.846369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.737494 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716121 SAMN22557067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335970/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.541149 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.79352 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.781025 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716122 SAMN22557391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SD-CDC-ASC210335967/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.219491 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.714842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.429357 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716123 SAMN22560028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375805/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.688791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.685966 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.359771 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716124 SAMN22558116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375806/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.320765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.374897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.93122 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716125 SAMN22558115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210375807/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.264007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.18728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.683378 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716126 SAMN22557300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375808/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.454208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.19921 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.555378 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716127 SAMN22557299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375809/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.604103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.032176 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.729581 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716128 SAMN22557296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375812/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.777168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.89488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.706215 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716129 SAMN22557297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375811/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.564899 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.105836 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.897817 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716130 SAMN22557298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375810/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.865896 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.208904 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.688905 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716131 SAMN22557294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375814/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.587795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.378605 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.336199 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716132 SAMN22557293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375815/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.952608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.824059 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.335045 lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716133 SAMN22557295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375813/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.242117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.554255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.961557 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716134 SAMN22557292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375816/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.359029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.660544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.538412 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716135 SAMN22557291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375817/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.490558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.654058 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.817548 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716136 SAMN22557290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375818/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.772065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.9860325 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.240166 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716137 SAMN22559220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210375819/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.171728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.983295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.926453 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716138 SAMN22559883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375822/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.998145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.432482 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.416775 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716139 SAMN22557054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210375821/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.92749 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.442968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.406593 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716140 SAMN22559882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375823/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.508465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.730707 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.177651 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716141 SAMN22558960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210375825/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.632534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.776761 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.926157 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716142 SAMN22558959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210375826/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.827504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.825831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.415099 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716143 SAMN22558958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210375827/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.129726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.271715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.652727 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716144 SAMN22560027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375828/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.260023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.425701 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.960192 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716145 SAMN22558229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210375829/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.819477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.532717 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.38169 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716146 SAMN22558227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210375832/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.287323 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.262531 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.68488 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716147 SAMN22558228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210375831/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.555469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.010926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.37651 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716148 SAMN22557289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375833/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.152378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.558413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.49321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716149 SAMN22557288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375834/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.28923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.083189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.553984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716150 SAMN22557287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210375835/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.454178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.311218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.850991 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716151 SAMN22560026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375836/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.167759 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.288692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.980141 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716152 SAMN22560025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375837/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.262629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.599165 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.442915 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716153 SAMN22560024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375838/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.343084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.054735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.70924 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716154 SAMN22557019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380265/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.118253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.554933 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.352719 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716155 SAMN22558841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380266/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.461329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.363842 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.500338 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716156 SAMN22557018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380267/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.115226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.918626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.724803 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716157 SAMN22560023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375839/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.376787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.896172 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.380991 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716158 SAMN22557017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380268/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.826302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.404142 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.875228 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716159 SAMN22557015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380271/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.607855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.43308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.707823 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716160 SAMN22557016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380269/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.535295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.020256 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.97202 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716161 SAMN22557978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380273/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.576616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.261374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.107712 lineage/clade name B.1.335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716162 SAMN22557483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380274/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.550157 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.1251745 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.635028 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716163 SAMN22559014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210380275/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.205395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.454023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.616348 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716164 SAMN22559013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210380276/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.675705 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.604858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.842365 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716165 SAMN22559012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210380277/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.423299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.944075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.418448 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716166 SAMN22559011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210380278/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.901616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.612024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.248313 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716167 SAMN22558051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210380279/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.117853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.854174 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.365864 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716168 SAMN22557482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210380280/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.934961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.70436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.835474 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716169 SAMN22558218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380281/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.47657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.609758 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.167364 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716170 SAMN22558050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210380282/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.799417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.17233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.407358 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716171 SAMN22558217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210380283/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.74703 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.2959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.392799 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716172 SAMN22558049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210380284/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.311996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.7845335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.100107 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716173 SAMN22559010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210380285/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.229551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.720449 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.711259 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716174 SAMN22558839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380287/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.52409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.937715 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.769984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716175 SAMN22558840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210380286/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.876205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.420506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.554223 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716176 SAMN22557014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380288/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.766027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.256022 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.780995 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716177 SAMN22559009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210380290/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.729184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.421506 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.472427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716178 SAMN22557977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380289/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.656173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.291123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.792631 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716179 SAMN22558986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380292/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.413183 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.727665 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.4456 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716180 SAMN22558985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380293/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.457243 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.581856 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.706223 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716181 SAMN22556837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380294/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.333324 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.863081 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.211055 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716182 SAMN22557976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380296/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.697546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.88838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.204117 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716183 SAMN22559226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380295/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.977287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.717993 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.977789 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716184 SAMN22558984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380297/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.20531 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.009726 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.34254 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716185 SAMN22557975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210380298/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.948391 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.829292 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.329239 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716186 SAMN22559225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210380299/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.511821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.776238 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.343589 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716187 SAMN22557154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095362/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.830177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.266018 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.836351 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716188 SAMN22557442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210095364/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.617859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.18279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.28092 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716189 SAMN22558243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210095365/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.885101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.903391 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.279981 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716190 SAMN22556914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095369/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.509142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.906597 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.236975 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716191 SAMN22558186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095367/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.659204 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.596846 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.661892 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716192 SAMN22556915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095368/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.397368 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.565115 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.917125 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716193 SAMN22560056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210095366/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.234314 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.615284 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.87295 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716194 SAMN22558921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095370/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.880789 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.743157 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.24361 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716195 SAMN22556913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095371/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.411215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.279387 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.991142 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716196 SAMN22556911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095373/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.73522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.399561 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.3075075 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716197 SAMN22556912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095372/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.571525 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.638463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.966067 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716198 SAMN22556910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095374/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.580336 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.342804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.802111 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716199 SAMN22557152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095377/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.585801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.513109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.568305 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716200 SAMN22557153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095376/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.484907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.13143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.462324 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716201 SAMN22557751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210095375/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.15105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.23335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.50757 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716202 SAMN22557151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210095379/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.19068 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.30236 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.92458 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716203 SAMN22556909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095378/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.365784 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.96527 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.52458 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716204 SAMN22557916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210095380/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.161855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.800603 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.741755 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716205 SAMN22558032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095382/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.420305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.553902 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.957162 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716206 SAMN22558920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210095381/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.174557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.308699 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.268984 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716207 SAMN22556908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095383/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.047392 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.758835 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.304903 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716208 SAMN22556907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210095385/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.513633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.061208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.951877 lineage/clade name AY.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716209 SAMN22557750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210095384/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.2477045 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.287207 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4452 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716210 SAMN22558423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095386/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.30113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.873581 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.426977 lineage/clade name AY.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716211 SAMN22558422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095387/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.384605 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.29713 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.997938 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716212 SAMN22558030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095389/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.651137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.939571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.677639 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716213 SAMN22558031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095388/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.4603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.263268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.769075 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716214 SAMN22558185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095390/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.733955 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.74717 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.481705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716215 SAMN22558184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095394/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8794775 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.268915 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.879484 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716216 SAMN22558029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210095392/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.886929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.267057 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.283453 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716217 SAMN22558421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210095393/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.003263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.294681 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.172254 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716218 SAMN22560036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210335971/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.919637 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.370678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.964342 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716219 SAMN22558183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210095395/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.800598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.956655 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.923486 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716220 SAMN22559037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335973/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.755706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.81263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.365742 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716221 SAMN22559035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335976/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.19984 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.931421 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.741802 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716222 SAMN22559036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335974/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.394848 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.574953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.881066 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716223 SAMN22559034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335977/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.312728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.130695 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.641956 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716224 SAMN22559033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335978/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.228033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.762795 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.4380865 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716225 SAMN22558134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335982/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.368966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.000339 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.969323 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716226 SAMN22559032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210335979/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.49795 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.288103 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.922441 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716227 SAMN22559160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210335983/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.400648 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.74678 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.532537 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716228 SAMN22558390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210335981/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.989325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.82019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.959212 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716229 SAMN22557704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210335984/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.507447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.410469 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.619186 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716230 SAMN22557397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335985/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.425993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.014328 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.836258 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716231 SAMN22557396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335986/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.584804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.191381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.641566 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716232 SAMN22557395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335987/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.784796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.387539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.839787 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716233 SAMN22557066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335988/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.27854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.241011 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.560977 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716234 SAMN22557065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335989/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.694442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.200125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.263604 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716235 SAMN22557064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210335990/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.740891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.829372 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.898523 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716236 SAMN22557394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210335991/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.730526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.311777 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.430199 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716237 SAMN22557512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335994/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.162683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.92215 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.806042 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716238 SAMN22557307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210335992/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.795097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.453667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.624395 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716239 SAMN22557513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210335993/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.291036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.460139 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.850705 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716240 SAMN22558133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335995/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.261522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.922407 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.564068 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716241 SAMN22558132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210335996/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 39.06189 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.452995 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.153193 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716242 SAMN22556875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335997/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.923769 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.676624 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.51158 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716243 SAMN22556874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335998/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.775804 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.012775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.557218 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716244 SAMN22556873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210335999/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.133758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.08467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.029814 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716245 SAMN22557306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210374401/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.1543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.5353 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.049347 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716246 SAMN22559159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210336000/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.999384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.367851 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.378729 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716247 SAMN22557305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210374402/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9192505 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.248306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.445542 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716248 SAMN22559894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210374434/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.941904 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.555305 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.359241 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716249 SAMN22558277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210374438/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.095613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.694604 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.422668 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716250 SAMN22559893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210374435/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.682203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.545736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.460238 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716251 SAMN22560020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375844/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.505165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.352793 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.733139 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716252 SAMN22560022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375842/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.87862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.6496725 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.072087 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716253 SAMN22560021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210375843/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.817894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.518201 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7341175 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716254 SAMN22558386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210375845/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.568191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.55749 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.581356 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716255 SAMN22557053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210375847/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.851387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.143234 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.470935 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716256 SAMN22556793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210375848/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.397796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.404121 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.686245 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716257 SAMN22557689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375850/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.678127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.162378 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.630032 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716258 SAMN22557688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210375851/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.890886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.906899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.271442 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716259 SAMN22557435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210375849/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.401802 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.536061 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.849959 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716260 SAMN22558053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375854/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.196177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.611652 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.441269 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716261 SAMN22558054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210375853/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.21053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.140759 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.164524 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716262 SAMN22557052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210375852/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.525302 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.580569 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.522474 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716263 SAMN22558862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210375855/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.225313 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.390884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.666473 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716264 SAMN22557963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210375859/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.231085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.990196 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.570326 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716265 SAMN22559881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375857/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.966335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.48096 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.20776 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716266 SAMN22557964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210375858/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.136023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.743114 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.631214 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716267 SAMN22557962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210375860/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.5029 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.69485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.44815 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716268 SAMN22558226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210375861/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.328865 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.901102 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.417519 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716269 SAMN22559880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210375862/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.218828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.39342 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.80813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716270 SAMN22559879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210376127/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.923079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.969262 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.574058 lineage/clade name AY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716271 SAMN22557051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376128/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.92861 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.2277 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.96797 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716272 SAMN22557050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376129/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.316236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.817186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.673319 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716273 SAMN22557048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376131/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.396341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.417815 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.7807255 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716274 SAMN22557049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376130/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.323656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.610922 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.683563 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716275 SAMN22557047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376132/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.701538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.81202 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.173876 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716276 SAMN22559023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376133/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.19686 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.599508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.439531 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716277 SAMN22557990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210376135/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.632498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.35521 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.928656 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716278 SAMN22559022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376134/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.659195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.900992 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.020497 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716279 SAMN22559123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376138/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.84101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.718882 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.417355 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716280 SAMN22559122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376139/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.940985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.225335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.304088 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716281 SAMN22557045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376141/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.176028 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.65619 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.584819 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716282 SAMN22557046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376140/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.03005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.598086 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.92334 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716283 SAMN22558983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380300/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.017277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.876703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.46917 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716284 SAMN22558982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210380302/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.128227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 31.015371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 31.469612 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716285 SAMN22557013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380305/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.316406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.662855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.660149 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716286 SAMN22558373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210380304/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.869032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.2344265 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.821257 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716287 SAMN22557747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210380307/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.785089 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.810485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.257991 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716288 SAMN22558372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210380306/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.259201 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.968336 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.981027 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716289 SAMN22557012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380312/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.9389105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.833373 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.830416 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716290 SAMN22557746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210380309/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.43442 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.433395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.178959 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716291 SAMN22557745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210380310/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.795745 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.728721 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.2378 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716292 SAMN22557653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210380311/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.239277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.880724 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.499868 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716293 SAMN22557011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380313/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.921305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.920113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.085373 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716294 SAMN22557010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380314/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.92543 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.661208 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.117482 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716295 SAMN22557009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380315/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.165413 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.862728 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.31306 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716296 SAMN22557008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210380316/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.022736 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.797321 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.511814 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716297 SAMN22557744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NH-CDC-ASC210380317/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.582837 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.1007185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.82267 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716298 SAMN22559878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210376144/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.534416 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.016306 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.29321 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716299 SAMN22557492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210376146/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.980888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.827927 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.9793 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716300 SAMN22558861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376147/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.262104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.514345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.8137865 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716301 SAMN22559121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376145/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.344938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.937752 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.196972 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716302 SAMN22557286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210376415/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.833199 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.826958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.77014 lineage/clade name B.1.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716303 SAMN22558992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210376416/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.568552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.912814 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.54621 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716304 SAMN22558991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210376417/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.151417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.057686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.700037 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716305 SAMN22558990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210376418/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.887676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.60959 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.4359 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716306 SAMN22559119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376420/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.591436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.576044 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.994331 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716307 SAMN22559120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376419/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.459062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.129158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.578712 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716308 SAMN22558315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210376422/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.49393 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.015855 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.75772 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716309 SAMN22559021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376421/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.507826 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.38181 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.804068 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716310 SAMN22559020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376423/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.617632 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.046785 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.053026 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716311 SAMN22559019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376424/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.369188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.292194 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.951271 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716312 SAMN22559018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376426/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.436522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.284568 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.927895 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716313 SAMN22557474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210376470/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.397633 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.499271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.488592 lineage/clade name AY.7.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716314 SAMN22558384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210376475/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.206844 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.37227 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.803291 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716315 SAMN22558385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210376474/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.405771 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.197224 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.36925 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716317 SAMN22558383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210376476/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.921087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.903858 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.381172 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716318 SAMN22557684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376480/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.500265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.468891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.316713 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716319 SAMN22557686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376478/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.995706 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.509322 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.143975 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716320 SAMN22557687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376477/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.742278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.149839 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.302272 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716321 SAMN22557961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210376481/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.88659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.144094 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.390926 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716322 SAMN22557685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210376479/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.781614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.4474125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.388054 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716323 SAMN22557960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210376482/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.329493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.075748 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.611769 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716324 SAMN22557848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210376483/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.317052 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.161507 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.540095 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716325 SAMN22557847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210376484/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.601715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.130049 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.830433 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716326 SAMN22558323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210091505/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.608877 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.917634 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.613094 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716327 SAMN22557044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210376485/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.700943 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.560025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.7090845 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716328 SAMN22556792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210091506/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.38964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.460804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.098119 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716329 SAMN22557843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210091507/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.650879 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.19591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.019924 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716330 SAMN22558956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210091508/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.4475155 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.222584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.639952 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716331 SAMN22557544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317304/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.642473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.205347 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.554021 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716332 SAMN22558013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210317306/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.26221 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.7666235 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.924315 lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716333 SAMN22557543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317305/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.979033 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.993053 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.899055 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716334 SAMN22557542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317308/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.854558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.904903 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.272337 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716335 SAMN22557476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210317307/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.597266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 8.997611 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.020801 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716316 SAMN22558860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210376471/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.271587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.927832 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.704344 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716336 SAMN22559191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210317312/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.508308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.396711 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.173964 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716337 SAMN22557540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317310/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.160353 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.588797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.322693 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716338 SAMN22557541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210317309/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.577145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.592615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.827217 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716339 SAMN22559192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210317311/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.350927 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.288702 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.254425 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716340 SAMN22559917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317313/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.993008 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.3710575 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.947315 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716341 SAMN22560044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317316/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.336035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.158974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.830776 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716342 SAMN22560045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317315/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.679409 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.587637 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.329716 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716343 SAMN22559916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210317314/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.164791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.002957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.401982 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716344 SAMN22560043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210317317/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.394571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.991623 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.878551 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716345 SAMN22557122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317319/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.254395 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.21703 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.912352 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716346 SAMN22557123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317318/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.745961 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.786806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.517892 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716347 SAMN22557121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317321/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.749327 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.730854 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.474869 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716348 SAMN22558174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317324/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.57936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.757776 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.605787 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716349 SAMN22558173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317325/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.2187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.813276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.878813 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716350 SAMN22558894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210317327/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.724424 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.803787 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.510918 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716351 SAMN22557720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317328/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.79081 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.347147 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.908411 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716352 SAMN22557718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317330/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.393104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.183548 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.961329 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716353 SAMN22557719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317329/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.267479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.628939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.966022 lineage/clade name AY.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716354 SAMN22557717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210317331/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.782417 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.479614 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.517496 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716355 SAMN22557461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210317333/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.727797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.882273 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.99029 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716356 SAMN22557460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210317334/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.625952 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.303413 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.724043 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716357 SAMN22556890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210317332/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8078165 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.978146 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.917536 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716358 SAMN22557472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210317336/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.383737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.236168 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.965837 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716359 SAMN22558172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317339/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.352386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.412709 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.818092 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716360 SAMN22557471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210317337/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.674264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.321363 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.970097 lineage/clade name AY.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716361 SAMN22557120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210317341/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.279022 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.064161 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.942926 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716362 SAMN22558171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210317340/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.560966 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.370552 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.616544 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716363 SAMN22558322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210093398/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.71623 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.615068 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.234756 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716364 SAMN22557204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093399/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.570358 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.485931 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.27002 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716365 SAMN22557203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093400/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.934116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.458908 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.638449 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716366 SAMN22557202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093401/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.44152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.633295 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.499 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716367 SAMN22557201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093402/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.565534 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.726189 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.3567095 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716368 SAMN22557200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093403/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.587675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.33219 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.55855 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716369 SAMN22557950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093404/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.708786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.306047 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.469194 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716370 SAMN22557949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093405/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.954964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.88015 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.742905 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716371 SAMN22557948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093406/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.137592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.921099 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.963154 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716372 SAMN22557947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093407/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.0905485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.255632 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7615595 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716373 SAMN22557946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093408/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.371855 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.204422 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.797623 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716374 SAMN22556966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093410/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.653544 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.661134 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.706904 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716375 SAMN22556967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093409/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.422456 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.64499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.484692 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716376 SAMN22556965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093412/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.370592 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.765222 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.4896 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716377 SAMN22557945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210093411/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.68196 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.41408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.225044 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716378 SAMN22557199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093413/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.933285 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.593367 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.608235 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716379 SAMN22557198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210093414/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.7750635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.614675 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.542657 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716380 SAMN22559007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210093416/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.68872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.884079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.684479 lineage/clade name AY.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716381 SAMN22560013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210093415/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.040727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.6925335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.286224 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716382 SAMN22559005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210093419/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.265763 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.553729 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.35929 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716383 SAMN22557669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210093420/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.906586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.066109 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.603348 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716384 SAMN22559006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210093417/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.58864 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.728123 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.191208 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716385 SAMN22557668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210093421/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.915739 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.257565 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.848913 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716386 SAMN22556964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093422/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.600939 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.353546 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.952995 lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716387 SAMN22556963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093424/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.233255 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.565398 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.366605 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716388 SAMN22556962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210093425/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.581688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.848919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.506342 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716389 SAMN22556791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210093428/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.100607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.747757 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.1841955 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716390 SAMN22557842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210093429/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.872433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.48941 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.610022 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10716391 SAMN22558311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210093477/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-23 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.56722 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.844524 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.536018 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10717771 SAMN22556845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210380065/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-27 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.752909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.592448 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.274448 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10717772 SAMN22559118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210376428/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-24 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.672929 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.72455 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.838795 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10717773 SAMN22559017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210376427/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.219139 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.5520735 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.253712 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10717774 SAMN22557285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210376429/2021 collected_by Aegis Sciences Corporation collection_date 2021-09-25 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.261145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.614958 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.179707 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated