SRS10713951 SAMN22558562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027043/2021 collected_by RI State Health Laboratories collection_date 2021-10-01 isolation_source Nasal midturbinate swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713952 SAMN22558658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027045/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.5 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713953 SAMN22558589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027046/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-27 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713954 SAMN22558728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027048/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-27 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.64 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713955 SAMN22558588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027047/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-26 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713956 SAMN22558644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027050/2021 collected_by MT Public Health Laboratory collection_date 2021-10-01 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713957 SAMN22558657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027101/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713958 SAMN22558577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027103/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.12 lineage/clade name AY.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713959 SAMN22558578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027102/2021 collected_by PR Public Health Lab collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.38 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713960 SAMN22558576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027105/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.49 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713961 SAMN22558575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027106/2021 collected_by PR Public Health Lab collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.2 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713962 SAMN22558643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027107/2021 collected_by MT Public Health Laboratory collection_date 2021-10-01 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713963 SAMN22558656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027108/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.1 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713964 SAMN22558655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027109/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713965 SAMN22558587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027110/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-29 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713966 SAMN22558561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027112/2021 collected_by RI State Health Laboratories collection_date 2021-10-01 isolation_source Nasal midturbinate swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.6 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713967 SAMN22558726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027114/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.78 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713968 SAMN22558727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027113/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-29 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 13.79 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713969 SAMN22558560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027115/2021 collected_by RI State Health Laboratories collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.1 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713970 SAMN22558586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027116/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-29 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713971 SAMN22558725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027120/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-24 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.54 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713972 SAMN22558654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027117/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-28 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713973 SAMN22558642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027122/2021 collected_by MT Public Health Laboratory collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713974 SAMN22558653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027121/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713975 SAMN22558559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027123/2021 collected_by RI State Health Laboratories collection_date 2021-10-01 isolation_source Nasal midturbinate swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.3 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713976 SAMN22558724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027126/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-28 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.26 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713977 SAMN22558641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027127/2021 collected_by MT Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713978 SAMN22558585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027129/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-27 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713979 SAMN22558652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027130/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713980 SAMN22558584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027131/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-27 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713981 SAMN22558574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027132/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.81 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713982 SAMN22558729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AL-CDC-2-5027134/2021 collected_by AL Dept. of Public Health Bureau of Clinical Laboratories collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.27 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713983 SAMN22558573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027133/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.68 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713984 SAMN22558572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027135/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.811 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713985 SAMN22558571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027136/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.57 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713986 SAMN22558570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027137/2021 collected_by PR Public Health Lab collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.05 lineage/clade name P.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713987 SAMN22558569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027140/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.98 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713988 SAMN22558568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027141/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.05 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713989 SAMN22558718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CA-CDC-2-5027138/2021 collected_by CDPH, Microbial Diseases Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.72 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713990 SAMN22558558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027143/2021 collected_by RI State Health Laboratories collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.33 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713991 SAMN22558567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027142/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.88 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713992 SAMN22558640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027145/2021 collected_by MT Public Health Laboratory collection_date 2021-10-01 isolation_source Nasal and oropharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal and oropharyngeal swab collection_method Nasal and oropharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.29 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713993 SAMN22558583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027148/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-22 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713994 SAMN22558723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027146/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-27 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.04 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713995 SAMN22558651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027149/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.1 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713996 SAMN22558582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027150/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-27 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713997 SAMN22558566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027202/2021 collected_by PR Public Health Lab collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.69 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713998 SAMN22558565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027203/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26.2 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10713999 SAMN22558683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/HI-CDC-2-5027204/2021 collected_by HI Dept. of Health, State Laboratories Division collection_date 2021-08-29 isolation_source nasopharyngeal swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 24.73 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714000 SAMN22558650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027206/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-28 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.3 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714001 SAMN22558581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027207/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-29 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714002 SAMN22558639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027208/2021 collected_by MT Public Health Laboratory collection_date 2021-10-01 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714003 SAMN22558649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027209/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714004 SAMN22558722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027210/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-27 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714005 SAMN22558557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027212/2021 collected_by RI State Health Laboratories collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.6 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714006 SAMN22558556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027213/2021 collected_by RI State Health Laboratories collection_date 2021-09-30 isolation_source Nasal midturbinate swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714007 SAMN22558580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027214/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-21 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714008 SAMN22558648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027215/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 11.4 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714009 SAMN22558638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027217/2021 collected_by MT Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714010 SAMN22558647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027216/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.9 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714011 SAMN22558555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027220/2021 collected_by RI State Health Laboratories collection_date 2021-10-01 isolation_source Nasal midturbinate swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.6 lineage/clade name AY.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714012 SAMN22558554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/RI-CDC-2-5027221/2021 collected_by RI State Health Laboratories collection_date 2021-10-01 isolation_source Nasal midturbinate swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.1 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714013 SAMN22558646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027222/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.1 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714014 SAMN22558637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MT-CDC-2-5027223/2021 collected_by MT Public Health Laboratory collection_date 2021-10-01 isolation_source nasopharyngeal swab geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714015 SAMN22558645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MD-CDC-2-5027228/2021 collected_by MD DOH Laboratories Administration collection_date 2021-09-29 isolation_source Oral swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Oral swab collection_method Oral swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714016 SAMN22558579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/OR-CDC-2-5027227/2021 collected_by OR State PHL-Virology/Immunology Section collection_date 2021-09-29 isolation_source Unknown geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714017 SAMN22558721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027225/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-27 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.74 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714018 SAMN22558720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027229/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-24 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.95 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714019 SAMN22558719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-5027232/2021 collected_by AR Dept. of Health-PHL, Molecular Diagnostics collection_date 2021-09-27 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.15 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714020 SAMN22558682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/HI-CDC-2-5027231/2021 collected_by HI Dept. of Health, State Laboratories Division collection_date 2021-08-26 isolation_source Nasal midturbinate swab geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.47 lineage/clade name AY.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714021 SAMN22558700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5027233/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.05 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714022 SAMN22558564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027234/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.44 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714023 SAMN22558563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PR-CDC-2-5027235/2021 collected_by PR Public Health Lab collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.3994 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714024 SAMN22558697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033903/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-14 isolation_source nasopharyngeal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714025 SAMN22558552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033909/2021 collected_by SD Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714026 SAMN22558553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033908/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714027 SAMN22558551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033910/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714028 SAMN22558696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033914/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source Nasopharyngeal and Oropharyngeal Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal and Oropharyngeal Swab collection_method Nasopharyngeal and Oropharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714029 SAMN22558550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033917/2021 collected_by SD Public Health Laboratory collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714030 SAMN22558695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033922/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source nasopharyngeal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.89 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714031 SAMN22558549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033918/2021 collected_by SD Public Health Laboratory collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714032 SAMN22558548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033923/2021 collected_by SD Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714033 SAMN22558547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033924/2021 collected_by SD Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.9 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714034 SAMN22558694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033925/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source nasopharyngeal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.45 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714035 SAMN22558659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/KS-CDC-2-5033928/2021 collected_by KS Health and Environmental Laboratories collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.3457 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714036 SAMN22558545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033930/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714038 SAMN22558544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033931/2021 collected_by SD Public Health Laboratory collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714039 SAMN22558543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033935/2021 collected_by SD Public Health Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714040 SAMN22558693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033934/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source Nasopharyngeal and Oropharyngeal Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal and Oropharyngeal Swab collection_method Nasopharyngeal and Oropharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714041 SAMN22558542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033936/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714042 SAMN22558541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033937/2021 collected_by SD Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.7 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714043 SAMN22558540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033938/2021 collected_by SD Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714044 SAMN22558691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033944/2021 collected_by FL Bureau of Public Health Laboratories-Miami collection_date 2021-09-22 isolation_source Nasopharyngeal and Oropharyngeal Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal and Oropharyngeal Swab collection_method Nasopharyngeal and Oropharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name AY.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714045 SAMN22558692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5033943/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-14 isolation_source Nasopharyngeal and Oropharyngeal Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal and Oropharyngeal Swab collection_method Nasopharyngeal and Oropharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714046 SAMN22558690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034001/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source Nasopharyngeal and Oropharyngeal Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal and Oropharyngeal Swab collection_method Nasopharyngeal and Oropharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714047 SAMN22558539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034004/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714048 SAMN22558689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034002/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-16 isolation_source nasopharyngeal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.86 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714049 SAMN22558538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034005/2021 collected_by SD Public Health Laboratory collection_date 2021-09-20 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714057 SAMN22558532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034019/2021 collected_by SD Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714066 SAMN22558525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034033/2021 collected_by SD Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714068 SAMN22558523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034038/2021 collected_by SD Public Health Laboratory collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714037 SAMN22558546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5033929/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714050 SAMN22558537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034006/2021 collected_by SD Public Health Laboratory collection_date 2021-09-23 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name AY.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714051 SAMN22558535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034009/2021 collected_by SD Public Health Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714052 SAMN22558536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034007/2021 collected_by SD Public Health Laboratory collection_date 2021-09-20 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714053 SAMN22558688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034011/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source Nasopharyngeal and Oropharyngeal Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal and Oropharyngeal Swab collection_method Nasopharyngeal and Oropharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714054 SAMN22558687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034013/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-14 isolation_source Throat (Oropharyngeal) swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Throat (Oropharyngeal) swab collection_method Throat (Oropharyngeal) swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 35.58 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714055 SAMN22558534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034017/2021 collected_by SD Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.2 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714056 SAMN22558533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034018/2021 collected_by SD Public Health Laboratory collection_date 2021-09-19 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714058 SAMN22558531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034020/2021 collected_by SD Public Health Laboratory collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714059 SAMN22558686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034021/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source nasopharyngeal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.52 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714060 SAMN22558529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034025/2021 collected_by SD Public Health Laboratory collection_date 2021-09-19 isolation_source Nasal midturbinate swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 21 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714061 SAMN22558530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034022/2021 collected_by SD Public Health Laboratory collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714062 SAMN22558528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034029/2021 collected_by SD Public Health Laboratory collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714063 SAMN22558685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034030/2021 collected_by FL Bureau of Public Health Laboratories-Tampa collection_date 2021-09-13 isolation_source nasopharyngeal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28.22 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714064 SAMN22558527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034031/2021 collected_by SD Public Health Laboratory collection_date 2021-09-21 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.5 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714065 SAMN22558526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034032/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714067 SAMN22558522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034039/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 26 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714069 SAMN22558684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/FL-CDC-2-5034040/2021 collected_by FL Bur. of Public Health Laboratories-Jacksonville collection_date 2021-08-16 isolation_source Throat (Oropharyngeal) swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Throat (Oropharyngeal) swab collection_method Throat (Oropharyngeal) swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 0 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714070 SAMN22558524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034034/2021 collected_by SD Public Health Laboratory collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.8 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714071 SAMN22558521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-5034041/2021 collected_by SD Public Health Laboratory collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.4 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714072 SAMN22558636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034049/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714073 SAMN22558603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034048/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.53 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714074 SAMN22558709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034050/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-17 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714075 SAMN22558708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034101/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-15 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714076 SAMN22558681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034102/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 11.7 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714077 SAMN22558635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034103/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714078 SAMN22558625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NE-CDC-2-5034107/2021 collected_by NE Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.5427 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714079 SAMN22558601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034109/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-29 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.61 lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714080 SAMN22558602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034108/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-26 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 14.95 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714081 SAMN22558600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034110/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-24 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 9.42 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714082 SAMN22558624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NE-CDC-2-5034111/2021 collected_by NE Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.2082 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714083 SAMN22558680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034115/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 10.95 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714084 SAMN22558634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034117/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714085 SAMN22558633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034118/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714086 SAMN22558679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034121/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714087 SAMN22558632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034119/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714088 SAMN22558707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034122/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-15 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714089 SAMN22558631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034128/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714090 SAMN22558599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034129/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-26 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.57 lineage/clade name AY.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714091 SAMN22558520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034130/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714092 SAMN22558706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034134/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-13 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714093 SAMN22558630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034131/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714094 SAMN22558705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034135/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-17 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714095 SAMN22558678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034136/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 12.74 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714096 SAMN22558598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034137/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.15 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714097 SAMN22558623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NE-CDC-2-5034140/2021 collected_by NE Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 19.0822 lineage/clade name AY.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714098 SAMN22558597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034138/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-30 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.4 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714099 SAMN22558596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034141/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.39 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714100 SAMN22558699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5034143/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-23 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 22.06 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714101 SAMN22558595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034144/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-28 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.82 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714102 SAMN22558594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034145/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.84 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714103 SAMN22558622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NE-CDC-2-5034148/2021 collected_by NE Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 16.3655 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714104 SAMN22558593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034147/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 15.96 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714105 SAMN22558677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034203/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 11.7 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714106 SAMN22558592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034206/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-27 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 28.63 lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714107 SAMN22558704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034205/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-14 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714108 SAMN22558621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NE-CDC-2-5034207/2021 collected_by NE Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 25.1094 lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714109 SAMN22558591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034208/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-22 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 18.18 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714110 SAMN22558703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034211/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-17 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714111 SAMN22558676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034212/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 17.19 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714112 SAMN22558519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034215/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714113 SAMN22558518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034216/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714114 SAMN22558629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034217/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714115 SAMN22558517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034223/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714116 SAMN22558628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034218/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714117 SAMN22558516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034224/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-26 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714118 SAMN22558590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-5034226/2021 collected_by NJ Public Health and Environmental Laboratories collection_date 2021-09-23 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 27.57 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714119 SAMN22558627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034225/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-27 isolation_source Nasal midturbinate swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714120 SAMN22558626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NC-CDC-2-5034230/2021 collected_by NC State Laboratory of Public Health collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714121 SAMN22558702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034232/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-14 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714122 SAMN22558675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/IA-CDC-2-5034231/2021 collected_by IA State Hygienic Laboratory collection_date 2021-09-28 isolation_source nasopharyngeal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 10.01 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714123 SAMN22558701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/CT-CDC-2-5034233/2021 collected_by CT-Dr. Katherine A. Kelley State Public Health Lab collection_date 2021-09-17 isolation_source anterior nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device anterior nasal swab collection_method anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714124 SAMN22558515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034234/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714125 SAMN22558514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/TN-CDC-2-5034235/2021 collected_by TN Division of Laboratory Services collection_date 2021-09-24 isolation_source nasopharyngeal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714126 SAMN22558698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DC-CDC-2-5034236/2021 collected_by DC Public Health Lab/ Dept. of Forensic Sciences collection_date 2021-09-22 isolation_source nasopharyngeal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 23.58 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10714127 SAMN22558620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NE-CDC-2-5034240/2021 collected_by NE Public Health Laboratory collection_date 2021-09-27 isolation_source nasopharyngeal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 20.0813 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated