<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX12779855" alias="FA2-2_ONP_RAW">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12779855</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10571205">FA2-2_ONP_RAW</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>DNA-Seq of Enterococcus faecalis: Strain FA2-2</TITLE>
    <STUDY_REF accession="SRP343251">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP343251</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA774355</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The gDNA was converted into a Nanopore library with the 1D library kit SQK-LSK109. The library was sequenced on a SpotON R10.3 FLO-MIN111 flowcell for 3.5hs, using a GridIONx5 sequencer. Basecalling was performed by the Bonito basecaller packaged with Guppy 5.0.12.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10725001">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10725001</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN22569088</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FA2-2_ONP_RAW</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>GridION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12779856" alias="FA2-2_ONP">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12779856</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10571205">FA2-2_ONP</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>DNA-Seq of Enterococcus faecalis: Strain FA2-2</TITLE>
    <STUDY_REF accession="SRP343251">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP343251</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA774355</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>The gDNA was converted into a Nanopore library with the 1D library kit SQK-LSK109. The library was sequenced on a SpotON R10.3 FLO-MIN111 flowcell for 3.5hs, using a GridIONx5 sequencer. Basecalling was performed by the Bonito basecaller packaged with Guppy 5.0.12.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10725001">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10725001</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN22569088</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FA2-2_ONP</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>GridION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX12779857" alias="FA2-2_ILLU">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX12779857</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB10571205">FA2-2_ILLU</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>DNA-Seq of Enterococcus faecalis: Strain FA2-2</TITLE>
    <STUDY_REF accession="SRP343251">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP343251</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA774355</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Shotgun genomic library was created using the Hyper Library construction kit from Kapa Biosystems (Roche). Library quantitated by qPCR and sequenced on one SP lane for 101 cycles from one end of the fragments.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS10725001">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS10725001</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN22569088</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FA2-2_ILLU</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
