<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE186675" accession="SRP343426">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP343426</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA775057</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE186675</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Determination of human DNA replication origin position and efficiency reveals principles of initiation zone organisation</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>We describe a modification of initiation site sequencing (ini-seq, Langley et al., NAR 2016) in which density gradient centrifugation separates 'heavy' replicated DNA containing BrdU from DNA containing only 'light' dTTP before sequencing. This approach allows us to assign a replication initiation efficiency score to each of the 23905 origins identified. We also performed Short Nascent Strand sequencing (SNS-seq), an established method to map replication origins, in the same cell line as in Ini-seq2 for comparison. Overall design: Massive sequecing of human replication origin isolated from EJ30 cell line by either Ini-seq2 or SNS-seq method</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE186675</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>35801867</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
