SRS10775050 SAMN22717328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210057638/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.007488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.08365 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.458002 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775051 SAMN22717437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106379/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.47883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.628082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.343876 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775052 SAMN22717438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106378/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.973225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.41467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.891985 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775053 SAMN22717436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106380/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.85792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.63355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.246605 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775054 SAMN22717093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106382/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.500656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.733361 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775055 SAMN22717435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106381/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.607138 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.77571 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.650093 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775056 SAMN22717123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210106383/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-31 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.449953 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.305395 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.56586 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775057 SAMN22717237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106384/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.766227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.806436 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.762986 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775058 SAMN22717250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106386/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.196477 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.549369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.805545 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775059 SAMN22717434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106385/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.533194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.273687 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775060 SAMN22717433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106387/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.324938 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.067062 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775061 SAMN22717311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106389/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.881173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.469803 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775062 SAMN22717527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106390/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.419325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.569187 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775063 SAMN22717170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210106391/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.507067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.213995 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775064 SAMN22717432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106392/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.751575 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.73016 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.722935 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775065 SAMN22717207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210106399/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.49269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.169127 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.142609 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775066 SAMN22717206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210106400/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.956545 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.710051 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775067 SAMN22717092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106401/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.526344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.839287 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775068 SAMN22717431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106402/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.579884 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.281187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.071213 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775069 SAMN22717205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210106403/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.906716 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.18089 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775070 SAMN22717430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106404/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.50766 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.383501 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775071 SAMN22717310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106405/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.734726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.365837 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775072 SAMN22717169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210106407/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.406799 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.892622 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775073 SAMN22717309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106409/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.688496 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.656591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.538311 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775074 SAMN22717264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210106413/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.619507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.768026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.308575 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775075 SAMN22717526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106414/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.272923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.756082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.35716 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775076 SAMN22717525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106415/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.663612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.316559 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775077 SAMN22717277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210106419/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.138487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.921555 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775078 SAMN22717276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KY-CDC-ASC210106420/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.897501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.59628 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775079 SAMN22717429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106421/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.622497 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.859212 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.725908 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775080 SAMN22717275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210106422/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.694585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.935882 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775081 SAMN22717308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106423/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.228857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.83355 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775082 SAMN22717428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106424/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.442104 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.686405 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775083 SAMN22717427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106425/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.302269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.02048 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775084 SAMN22717426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106427/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.20831 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.768707 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775085 SAMN22717129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210106430/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.279935 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.351712 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775086 SAMN22717425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106432/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.069111 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.785984 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.666698 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775087 SAMN22717424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106433/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.394687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.6524515 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775088 SAMN22717091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106431/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.655586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.303076 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775089 SAMN22717423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106434/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.11206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.449366 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.511692 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775090 SAMN22717121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106435/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.909466 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.541025 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775091 SAMN22717422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106436/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.934492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.183132 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.436894 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775092 SAMN22717162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210106438/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.485693 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.243559 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775093 SAMN22717537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210106440/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.430117 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.961897 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775094 SAMN22717236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106441/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.236193 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.08665 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775095 SAMN22717263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210106439/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.166563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.998512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.902088 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775096 SAMN22717307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106442/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.336572 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.416885 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.21026 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775097 SAMN22717306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106443/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.746891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.805576 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775098 SAMN22717192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106445/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.547335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.849905 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775099 SAMN22717161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210106446/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.762194 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.529919 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.54504 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775100 SAMN22717546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210106447/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.308084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.822031 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775101 SAMN22717421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106449/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.987414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.857793 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775102 SAMN22717059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210106451/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.225506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.005974 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775103 SAMN22717051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210106452/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.963299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.89889 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775104 SAMN22717060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210106450/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.27143 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.610107 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775105 SAMN22717524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106456/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.4919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.366312 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775106 SAMN22717305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106455/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.543913 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.23084 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.426387 lineage/clade name B BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775107 SAMN22717523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106457/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.393354 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.23772 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775108 SAMN22717274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210106459/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.97316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.741138 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.205832 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775109 SAMN22717458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210106462/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.834276 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.397713 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775110 SAMN22717249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106461/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.989992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.951189 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775111 SAMN22717420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106463/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.492568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.930037 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775112 SAMN22717419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106465/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.360893 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.325659 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775113 SAMN22717304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106468/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.512218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.228772 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775114 SAMN22717303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106469/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.728833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.827049 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775115 SAMN22717120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106471/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.554478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.065747 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775116 SAMN22717302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106470/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.805796 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.06238 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775117 SAMN22717119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106472/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.63021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.053684 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775118 SAMN22717522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106473/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.567061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.512493 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775119 SAMN22717151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106477/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.426386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.576264 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775120 SAMN22717118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106474/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.732378 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.105576 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775121 SAMN22717150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106478/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.451208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.207458 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775122 SAMN22717521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106481/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.735622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.000326 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775123 SAMN22717149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106479/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.6109295 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.67233 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775124 SAMN22717520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106483/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.065453 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.734522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.287151 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775125 SAMN22717148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106482/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.252969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.279935 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775126 SAMN22717301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106487/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.403645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.539606 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.60025 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775127 SAMN22717248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106488/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.230454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.534942 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775128 SAMN22717235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106489/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.939566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.309496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.911142 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775129 SAMN22717234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106490/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.206108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.198202 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775130 SAMN22717457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210106491/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.304923 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.86109 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775131 SAMN22717090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106494/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.717439 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.713288 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775132 SAMN22717418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106498/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.766224 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.397093 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775133 SAMN22717542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210106495/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.958671 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.81936 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.285722 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775134 SAMN22717519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106501/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.24697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.264332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.811884 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775135 SAMN22717044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210106503/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.16817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.385725 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775136 SAMN22717518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106504/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.475016 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.98923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.504045 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775137 SAMN22717517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106505/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.551384 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.8457 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775138 SAMN22717089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106507/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.962564 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.660423 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775139 SAMN22717417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106508/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.832537 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.02974 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.930323 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775140 SAMN22717516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106509/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.738924 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.000084 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775141 SAMN22717456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210106510/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.714035 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.413074 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775142 SAMN22717128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210106513/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.194546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.644733 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.83381 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775143 SAMN22717247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106514/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.764136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.888891 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.247608 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775144 SAMN22717233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106515/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.267121 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.596607 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775145 SAMN22717327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210106516/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.302493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.109394 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775146 SAMN22717515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106517/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.446078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.247006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.302515 lineage/clade name P.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775147 SAMN22717514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106520/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.138718 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.641186 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775148 SAMN22717513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106521/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-29 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.11007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.19944 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775149 SAMN22717088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106522/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.409002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.000128 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775150 SAMN22717087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106525/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.002546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.595327 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775151 SAMN22717086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106526/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.568124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.866122 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775152 SAMN22717085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106527/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.894729 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.699255 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775153 SAMN22717084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106528/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.899014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.9393015 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775154 SAMN22717512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106531/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.290299 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.666811 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775155 SAMN22717511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106532/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.610434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.343466 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.307417 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775156 SAMN22717416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106534/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.587272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.33663 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.347672 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775157 SAMN22717415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106536/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.0257 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 29.6241 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.937746 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775158 SAMN22717414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106538/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.356365 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.553324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.719202 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775159 SAMN22717413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106539/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.267293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.263968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.732463 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775160 SAMN22717284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210106542/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.576872 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.676313 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775161 SAMN22717083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106543/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.690273 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.766556 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.419447 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775162 SAMN22717155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210106544/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.3048115 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.193673 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775163 SAMN22717326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210106546/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.145184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.336525 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775164 SAMN22717325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210106549/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.187781 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.201416 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775165 SAMN22717412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106550/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.86888 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.56524 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775166 SAMN22717191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106551/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.470099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.240774 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775167 SAMN22717082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106552/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.674374 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.306181 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775168 SAMN22717190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106554/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.578962 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.235182 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775169 SAMN22717176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210106555/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.381798 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.729475 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.903013 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775170 SAMN22717411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106556/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.549887 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.882338 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.12965 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775171 SAMN22717410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106557/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.480842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.902775 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775172 SAMN22717510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106559/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.760258 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.007294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.434597 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775173 SAMN22717273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210106560/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-26 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.592388 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.347143 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.96406 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775174 SAMN22717189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106561/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.739452 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.655253 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.909598 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775175 SAMN22717154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210106562/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.003144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.246708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.564962 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775176 SAMN22717246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106563/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.352404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.703716 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775177 SAMN22717081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106564/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.196108 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.514875 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775178 SAMN22717536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210106848/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.985689 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.523525 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.442969 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775179 SAMN22717175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210106850/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.303335 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.421223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.463572 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775180 SAMN22717409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106851/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.406618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.908962 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775181 SAMN22717147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106852/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.336069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.52968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.450082 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775182 SAMN22717408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106853/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.475506 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.280669 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775183 SAMN22717509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106854/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.504349 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.295311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.55903 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775184 SAMN22717508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106855/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.476274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.732618 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775185 SAMN22717214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210106856/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.735216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.850388 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775186 SAMN22717507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106857/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.079474 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.759954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.402473 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775187 SAMN22717221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210106861/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.873649 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.418914 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.187538 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775188 SAMN22717080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106864/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.444216 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.976496 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775189 SAMN22717506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106862/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.804087 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.517986 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775190 SAMN22717188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106865/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.704618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.284876 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.319529 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775191 SAMN22717407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106867/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.82868 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.780144 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775192 SAMN22717043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WY-CDC-ASC210106869/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.774433 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.385202 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775193 SAMN22717505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106870/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.334969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.782449 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775194 SAMN22717406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106871/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.439901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.345583 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775195 SAMN22717079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106872/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.20364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.588007 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775196 SAMN22717213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210106879/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.130034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.458837 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775197 SAMN22717535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210106878/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.23298 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.926311 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775198 SAMN22717455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210106882/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.885986 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.755993 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775199 SAMN22717504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106875/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.570612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.251727 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7860565 lineage/clade name P.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775200 SAMN22717262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210106886/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.186185 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.632967 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.4789295 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775201 SAMN22717117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106889/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.924004 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.444887 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775202 SAMN22717116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106890/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.620346 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.62086 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775203 SAMN22717115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106891/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.338271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.984567 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.368356 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775204 SAMN22717114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106892/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.127359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.599115 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775205 SAMN22717113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106893/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.219992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.201862 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775206 SAMN22717112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106894/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.804728 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.388348 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.108498 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775207 SAMN22717111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106895/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.563366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.462397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.14986 lineage/clade name P.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775210 SAMN22717110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106897/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.559947 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.619834 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.164745 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775211 SAMN22717109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106899/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.589697 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.958383 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775212 SAMN22717324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210106900/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.458464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.229187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.175821 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775213 SAMN22717232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106901/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.201901 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.391774 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775214 SAMN22717078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106902/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.67332 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.412111 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775215 SAMN22717108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106903/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.457571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.001335 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.277765 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775208 SAMN22717545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210106896/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.570897 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.562983 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775209 SAMN22717503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106898/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.348578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.824797 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.403345 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775216 SAMN22717107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106904/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.9023 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.729073 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775217 SAMN22717405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106905/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.535002 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.802849 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.044226 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775218 SAMN22717106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106906/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.878511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.275392 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775219 SAMN22717105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106907/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.631992 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.322378 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775220 SAMN22717300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210106910/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.914566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.250591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.635538 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775221 SAMN22717104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106911/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.613611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.223532 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775222 SAMN22717245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106912/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.379684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.395831 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.330961 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775223 SAMN22717404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106913/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.598177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.326223 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775224 SAMN22717103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106914/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.167513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.690678 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775225 SAMN22717403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106915/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.841629 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.1749 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775226 SAMN22717102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106916/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.620099 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.741716 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775227 SAMN22717402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106917/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.258469 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.716805 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.269997 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775228 SAMN22717401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106921/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.634403 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.793127 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775229 SAMN22717101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106922/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.976501 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.19189 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775230 SAMN22717100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106924/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.707954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.630411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.812088 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775231 SAMN22717544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210106925/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.333158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.339803 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.373845 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775232 SAMN22717099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210106927/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.916101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.299698 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775233 SAMN22717254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210106929/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.782549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.4329 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775234 SAMN22717323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210106931/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7493854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.676919 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775235 SAMN22717253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210106932/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.795912 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.721592 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775236 SAMN22717252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210106934/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.639889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.46858 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775237 SAMN22717127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210106936/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.736654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.77374 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.938459 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775238 SAMN22717077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106940/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.305834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.401827 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.811557 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775239 SAMN22717168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210106941/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.42289 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.862026 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.780834 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775240 SAMN22717244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106942/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.694678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.190271 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.336584 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775241 SAMN22717187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106943/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.758137 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.07485 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.596851 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775242 SAMN22717186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210106947/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.010464 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.812954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.903875 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775243 SAMN22717400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106946/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.13119 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.467985 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775244 SAMN22717399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106949/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.298569 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.210323 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.78574 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775245 SAMN22717398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106950/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.86862 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.493916 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775246 SAMN22717397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106951/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-31 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.830046 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.637806 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.796687 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775247 SAMN22717396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106952/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.044666 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.310514 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775248 SAMN22717502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106953/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.646331 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.309206 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775249 SAMN22717547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210106954/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.95256 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.170006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.468046 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775250 SAMN22717243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210106956/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.4014225 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.696798 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.741692 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775251 SAMN22717501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106957/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.913473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.694254 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.934792 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775252 SAMN22717076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106955/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.905415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.383064 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775253 SAMN22717395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106959/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.864265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.602062 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775254 SAMN22717394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106960/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.755486 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.818541 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775255 SAMN22717146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106961/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.629658 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.881374 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775256 SAMN22717500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106962/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.868651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.540324 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775257 SAMN22717212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210106964/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.46945 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.242308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.511463 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775258 SAMN22717393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106963/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.600603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.109804 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.559387 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775259 SAMN22717499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210106965/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.830764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.11019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.943297 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775260 SAMN22717454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210106966/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.821282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.197428 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775261 SAMN22717541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210106967/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.82415 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.732462 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775262 SAMN22717251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210106969/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.199059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.346447 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.743948 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775263 SAMN22717153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210106970/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.613195 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.766743 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775264 SAMN22717392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106972/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.872858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.851862 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.334162 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775265 SAMN22717391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106974/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.389105 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.55725 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775266 SAMN22717220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210106973/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.241568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.757304 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775267 SAMN22717390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106975/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.872133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.717539 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.813831 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775268 SAMN22717389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106976/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.881485 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.345534 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775269 SAMN22717075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106980/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.132803 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.589455 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775270 SAMN22717171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NV-CDC-ASC210106979/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.924126 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.354502 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775271 SAMN22717272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210106981/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.914892 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.752079 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.447646 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775272 SAMN22717271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210106982/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.384124 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.633249 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.714306 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775273 SAMN22717074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106983/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.223834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.750862 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775274 SAMN22717073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210106985/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.880246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.642867 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775275 SAMN22717211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210106987/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.992073 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.50899 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775276 SAMN22717453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210106989/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.173834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.347769 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775277 SAMN22717388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106988/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.384444 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.79647 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775278 SAMN22717387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210106990/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.690595 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.544285 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.705999 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775279 SAMN22717204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210106991/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.555172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.244951 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775280 SAMN22717050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210106993/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.379308 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.538907 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775281 SAMN22717231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106997/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.90859 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.568832 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775282 SAMN22717230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210106998/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.909322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.122748 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775283 SAMN22717152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OK-CDC-ASC210107001/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.91333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.014423 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775284 SAMN22717144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107000/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.576134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.472536 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.913761 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775285 SAMN22717145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210106999/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.345748 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.665024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.602042 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775286 SAMN22717386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107002/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.854057 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.415476 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.43321 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775287 SAMN22717498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107003/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.592985 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.936467 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.298182 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775288 SAMN22717385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107005/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.770845 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.888907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.906979 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775289 SAMN22717229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107006/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.890835 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.93481 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775290 SAMN22717058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210107008/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.972834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.884798 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775291 SAMN22717270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210107012/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.178858 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.465528 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775292 SAMN22717054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210107014/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.277151 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.953257 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775293 SAMN22717242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210107009/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.496552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.015877 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775294 SAMN22717174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210107016/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.48673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.939892 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775295 SAMN22717072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107017/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.304968 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.57362 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775296 SAMN22717384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107018/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.236834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.709404 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775297 SAMN22717383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107019/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.24627 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.655245 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775298 SAMN22717173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210107021/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.274733 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.358809 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775299 SAMN22717381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107022/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.747436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.578766 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775300 SAMN22717380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107023/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.289147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.785799 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775301 SAMN22717382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107020/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.993078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.64592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.443663 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775302 SAMN22717379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107024/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.899438 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.347977 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.160612 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775303 SAMN22717299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107025/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.62886 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.106932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.175272 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775304 SAMN22717049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210107026/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.78944 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.8937025 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.398115 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775305 SAMN22717053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210107028/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.420387 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.15001 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.189661 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775306 SAMN22717378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107029/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.185764 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.075954 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.578248 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775307 SAMN22717203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107027/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.171907 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.033667 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.303974 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775308 SAMN22717298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107030/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.1128 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.821308 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775309 SAMN22717219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210107031/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.265688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.817431 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775310 SAMN22717143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107037/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source NP Swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.12751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.739448 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775311 SAMN22717534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107034/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.715662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.200258 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.120703 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775312 SAMN22717497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107040/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.48987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.288737 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775313 SAMN22717496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107041/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.098248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.700562 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775314 SAMN22717167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210107042/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.403805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.193373 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775315 SAMN22717495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107043/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.23692 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.976154 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775316 SAMN22717452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107044/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.065828 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.420212 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775317 SAMN22717228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107045/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.465061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.483633 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775318 SAMN22717493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107049/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.981024 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.657663 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775319 SAMN22717494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107048/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.566178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.241244 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775320 SAMN22717185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107050/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.718694 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.212778 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775321 SAMN22717543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210107051/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.193991 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.595418 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.394435 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775322 SAMN22717297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107052/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.958684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.993478 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775323 SAMN22717268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210107054/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.755524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.55263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.760294 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775324 SAMN22717269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210107053/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.216247 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.440132 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775325 SAMN22717202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107055/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.358608 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.657558 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775326 SAMN22717218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210107056/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.450863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.562769 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775327 SAMN22717071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107057/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.588522 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.404074 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775328 SAMN22717377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107060/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.640526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.339405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.990213 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775329 SAMN22717376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107063/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.280964 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.7341 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.27846 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775330 SAMN22717296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107067/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.475889 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.290369 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.50569 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775331 SAMN22717375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107064/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.654385 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.599218 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.676376 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775332 SAMN22717295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107068/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.656454 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.618753 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775333 SAMN22717451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107069/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-29 isolation_source NP Swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Other collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.733377 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.533096 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775334 SAMN22717313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210107073/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.27159 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.17817 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775335 SAMN22717533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107075/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.536036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.9024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.832148 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775336 SAMN22717374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107078/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.457375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.887808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.310299 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775337 SAMN22717201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107076/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.871191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 36.30501 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.308937 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775338 SAMN22717312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/ID-CDC-ASC210107074/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.278563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.524147 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775339 SAMN22717261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107079/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.207921 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.160243 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775340 SAMN22717260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107083/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.845083 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.181286 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.462683 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775341 SAMN22717184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107081/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.28003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.96629 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775342 SAMN22717227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107086/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.862856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.549282 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775343 SAMN22717322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107087/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-31 isolation_source NP Swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.224287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.360426 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.70313 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775344 SAMN22717142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107085/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.005546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.424496 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.980733 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775345 SAMN22717373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107088/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.869266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.64351 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.387379 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775346 SAMN22717141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107089/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.27606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.106586 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775347 SAMN22717492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107090/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.176919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.443331 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775348 SAMN22717491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107091/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.211664 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.823212 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775349 SAMN22717241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210107092/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.148375 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.183445 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775350 SAMN22717200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107095/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.668652 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.616037 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.291504 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775351 SAMN22717372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107094/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.467027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.926971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.648616 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775352 SAMN22717199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107096/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.88919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.832787 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775353 SAMN22717450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107097/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.708303 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.695541 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.46815 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775354 SAMN22717449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107099/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.384249 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.438022 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775355 SAMN22717371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107100/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.238144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.396555 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.758501 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775356 SAMN22717532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107101/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.437808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.910121 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.688401 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775357 SAMN22717294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107102/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.86107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.57227 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775358 SAMN22717209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210107104/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.748571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.219488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.065527 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775359 SAMN22717210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210107103/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.611351 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.747511 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775360 SAMN22717370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107105/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.435218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.987775 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.665688 lineage/clade name P.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775361 SAMN22717070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107106/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.32145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.873328 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775362 SAMN22717490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107107/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.410954 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.369911 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775363 SAMN22717489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107112/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.495014 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.400923 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775364 SAMN22717069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107113/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source NP Swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.886995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.376316 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775365 SAMN22717369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107109/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.523297 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.258647 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775366 SAMN22717321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107114/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.133173 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.570326 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775367 SAMN22717259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107116/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.010824 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.652205 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.686773 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775368 SAMN22717160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210107117/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.333721 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.513327 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775369 SAMN22717098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210107119/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.651203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.584578 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775370 SAMN22717368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107121/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.187136 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.767975 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.216633 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775371 SAMN22717096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210107122/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.454578 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.096022 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775372 SAMN22717097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210107120/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.363511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.642957 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775373 SAMN22717095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210107123/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.74687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.207695 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775374 SAMN22717140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107124/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.7294445 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.01183 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775375 SAMN22717166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210107125/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.869379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.711655 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775376 SAMN22717293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107126/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.801737 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.629957 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.71951 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775377 SAMN22717183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107127/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.553484 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.485405 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775378 SAMN22717057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210107129/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source oral fluid geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Oral Fluid collection_method Oral Fluid purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.123262 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.284523 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775379 SAMN22717226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107128/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.68158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.780953 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775380 SAMN22717320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107131/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.285967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.273123 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775381 SAMN22717367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107132/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.861746 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.43394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.349045 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775382 SAMN22717366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107133/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.71315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.779884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.9928665 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775383 SAMN22717448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107136/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.713293 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.832454 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775384 SAMN22717531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107137/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.442434 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.459992 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775385 SAMN22717530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107138/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.704853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.558626 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.857509 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775386 SAMN22717292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107140/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.940607 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.867472 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.607319 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775387 SAMN22717217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210107139/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.192175 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.557522 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775388 SAMN22717193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NE-CDC-ASC210107141/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.80363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.441591 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775389 SAMN22717529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107142/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.134842 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.963345 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.50734 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775390 SAMN22717365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107143/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.608854 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.483248 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775391 SAMN22717364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107147/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.929919 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.276502 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775392 SAMN22717139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107148/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.730566 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.218294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.745739 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775393 SAMN22717363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107149/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.614654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.865173 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775394 SAMN22717487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107154/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.650654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.781157 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775395 SAMN22717225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107155/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.64 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.728376 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775396 SAMN22717488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107153/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.144174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.533983 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775397 SAMN22717138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107158/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.758526 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.969778 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.9801 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775398 SAMN22717240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210107160/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.187193 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.258767 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.113476 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775399 SAMN22717486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107159/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.764715 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.612682 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.889183 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775400 SAMN22717283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210107161/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.78053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.766813 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775401 SAMN22717485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107165/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.689184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.450708 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.19697 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775402 SAMN22717484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107167/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.741152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.169006 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.672273 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775403 SAMN22717314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IA-CDC-ASC210107163/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source NP Swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.604778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.798574 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775404 SAMN22717362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107169/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.436727 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.265125 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.914829 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775405 SAMN22717361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107170/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.767178 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.73225 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.46862 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775406 SAMN22717360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107171/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.750793 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.970467 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775407 SAMN22717359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107172/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.757911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.158377 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775408 SAMN22717447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107173/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.338154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.637808 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775409 SAMN22717357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107176/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.497278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.807327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.336452 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775410 SAMN22717483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107179/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.440856 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.48593 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775411 SAMN22717358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107174/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.424458 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.611874 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775412 SAMN22717482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107180/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.755857 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.343332 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775413 SAMN22717122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210107181/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.488182 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.272226 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775414 SAMN22717481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107182/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.352034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.4429865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.106158 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775415 SAMN22717356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107184/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.499065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.85879 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775416 SAMN22717355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107188/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.922989 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.371927 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775417 SAMN22717354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107189/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.780401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.654816 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775418 SAMN22717172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NM-CDC-ASC210107186/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.375315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.482971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.654095 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775419 SAMN22717353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107191/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.639166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.796503 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.999414 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775420 SAMN22717480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107190/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-01 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.645148 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.512777 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775421 SAMN22717352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107192/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.7724 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.87195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.612127 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775422 SAMN22717267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210107195/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.655687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.640841 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775423 SAMN22717446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107196/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.670422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.580349 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775424 SAMN22717282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210107199/2021 collected_by Aegis Sciences Corporation collection_date 2021-05-30 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.326967 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.825739 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775425 SAMN22717351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107198/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.482765 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.471066 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.086535 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775426 SAMN22717239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210107201/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.190678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.516138 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775427 SAMN22717094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210107200/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.399338 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.292532 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775428 SAMN22717291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107207/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.49786 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.834415 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775429 SAMN22717350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107203/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.157792 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.870906 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.639595 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775430 SAMN22717290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107209/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.597926 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.817105 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775431 SAMN22717046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210107212/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.362055 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.356186 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775432 SAMN22717137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107214/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.486776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.753717 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775433 SAMN22717136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107215/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.711206 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.509361 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.111075 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775434 SAMN22717289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107211/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.859226 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.670172 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775435 SAMN22717182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107216/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.233725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.695862 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775436 SAMN22717479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107218/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.821756 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.650808 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.420204 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775437 SAMN22717478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107219/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.748894 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.20532 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775438 SAMN22717477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107220/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.709047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.360294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.552147 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775439 SAMN22717349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107221/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.045542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.252901 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775440 SAMN22717165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210107413/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.657219 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.299648 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775441 SAMN22717348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107223/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.657406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.50451 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.372988 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775442 SAMN22717164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210107414/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.927473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.358799 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775443 SAMN22717068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107419/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.979969 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.698393 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.285484 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775444 SAMN22717163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210107415/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.333557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.611185 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775445 SAMN22717540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210107421/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.683891 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.1997 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775446 SAMN22717288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107420/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.632833 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.492607 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775447 SAMN22717287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107422/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.17315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.714516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.313433 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775448 SAMN22717347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107423/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.605272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.836334 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775449 SAMN22717346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107424/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.487322 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.402386 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775450 SAMN22717286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107426/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.649118 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.864107 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775451 SAMN22717258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107427/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.666431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.772476 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775452 SAMN22717257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107428/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.889479 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 30.664572 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775453 SAMN22717181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107430/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.779333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.312592 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.9469 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775454 SAMN22717476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107434/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.313069 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.581256 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775455 SAMN22717279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210107431/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.816174 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.636562 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.427826 lineage/clade name P.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775456 SAMN22717345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107436/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.968061 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.540354 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775457 SAMN22717475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107438/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.43587 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.473024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.401089 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775458 SAMN22717474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107439/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.383987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.513844 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.386713 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775459 SAMN22717473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107440/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-02 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.387116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.967316 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.043216 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775460 SAMN22717266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210107441/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.536971 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.862231 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775461 SAMN22717472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107445/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.454168 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.111393 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775462 SAMN22717445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107444/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.126812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.128914 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775463 SAMN22717444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107446/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.91027 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.538397 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.483364 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775464 SAMN22717224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107447/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.164687 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.267933 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775465 SAMN22717180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107448/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.761465 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.236961 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775466 SAMN22717443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107449/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.947941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.962298 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775467 SAMN22717471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107450/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.541695 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.50262 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775468 SAMN22717265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/LA-CDC-ASC210107451/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.364662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.349612 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775469 SAMN22717285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210107453/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.357925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.875028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.8560505 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775470 SAMN22717198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107454/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.310102 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.01075 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.507868 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775471 SAMN22717344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107458/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.993034 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.143328 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775472 SAMN22717223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107456/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.454065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.164583 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775473 SAMN22717343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107459/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.187246 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.437342 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775474 SAMN22717052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210107460/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.269147 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.824939 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.329298 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775475 SAMN22717124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210107461/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.695076 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.32881 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775476 SAMN22717197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107462/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.27142 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.729124 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775477 SAMN22717319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107463/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.463549 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.690107 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775478 SAMN22717342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107465/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.51266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.833086 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775479 SAMN22717067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107468/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.520287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.360086 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775480 SAMN22717256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107469/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.209612 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.693087 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775481 SAMN22717066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107470/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.738659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.380885 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775482 SAMN22717341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107471/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.726263 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.17671 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.876928 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775483 SAMN22717048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210107474/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.64277 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.241127 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775484 SAMN22717318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107475/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.154079 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.88264 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.595665 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775485 SAMN22717340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107476/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.29645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.425114 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775486 SAMN22717339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107477/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.448038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.375132 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775487 SAMN22717196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107478/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.111092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.552023 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775488 SAMN22717281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210107479/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.000871 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.612228 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775489 SAMN22717158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210107481/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.737106 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.57076 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.447771 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775490 SAMN22717159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210107480/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.573269 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.018198 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.915884 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775491 SAMN22717470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107482/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.952085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.014969 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.077738 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775492 SAMN22717047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210107483/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.191036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.792019 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.234558 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775493 SAMN22717179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107485/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.519812 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.336412 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775494 SAMN22717469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107486/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.134145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.24927 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775495 SAMN22717157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210107487/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.49805 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.872541 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775496 SAMN22717317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107488/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.865535 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.908675 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775497 SAMN22717135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107489/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.511768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.993208 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775498 SAMN22717134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107490/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.303618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.219631 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775499 SAMN22717468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107492/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.882282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.165865 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.567532 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775500 SAMN22717338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107494/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.199463 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.578884 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.49454 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775501 SAMN22717156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210107495/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.504272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.377346 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775502 SAMN22717065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107496/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.405659 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.44576 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775503 SAMN22717195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107497/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.007603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.815128 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.21528 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775504 SAMN22717316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107500/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.947157 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.307812 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.492317 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775505 SAMN22717337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107504/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.187504 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.407734 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.615084 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775506 SAMN22717064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107499/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.65936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.18285 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775507 SAMN22717238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210107507/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source NP Swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.12003 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.395828 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.554829 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775508 SAMN22717056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210107508/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.333996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.57112 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775509 SAMN22717467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107515/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.437815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.80544 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.040478 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775510 SAMN22717133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107513/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.490963 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.185838 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.681358 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775511 SAMN22717466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107521/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.455215 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.229456 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775512 SAMN22717208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210107520/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.31548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.437094 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775513 SAMN22717442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107525/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.614447 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.577688 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775514 SAMN22717465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107528/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.154177 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.692982 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775515 SAMN22717336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107530/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.304918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.917989 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775516 SAMN22717528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210107532/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.776683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.1919 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775517 SAMN22717132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107533/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.33975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.651918 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775518 SAMN22717464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107537/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.839218 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.57201 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775519 SAMN22717463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107543/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.542688 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.435598 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775520 SAMN22717131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107544/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.814152 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.828394 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.581387 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775521 SAMN22717441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107545/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.421436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.595356 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.489893 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775522 SAMN22717130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OR-CDC-ASC210107547/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-03 isolation_source Nasal - Anterior Nares geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.881571 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.792203 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775523 SAMN22717462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107549/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.279047 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.496286 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775524 SAMN22717461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107550/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.537863 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.662733 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775525 SAMN22717255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210107553/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.260777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.460474 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.146303 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775526 SAMN22717335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107554/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.692062 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.688736 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.193056 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775527 SAMN22717334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107555/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.937782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.005478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.623495 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775528 SAMN22717126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210107557/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.456248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.445478 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775529 SAMN22717460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107560/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.358599 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.514461 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.608058 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775530 SAMN22717315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210107559/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.32306 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.16024 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.827827 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775531 SAMN22717459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210107561/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race American Indian/Alaskan Native collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.812084 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.84499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.823404 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775532 SAMN22717063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107562/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.914478 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.916746 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.909233 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775533 SAMN22717333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107564/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.176882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.845978 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.446743 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775534 SAMN22717332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107565/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.439995 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.221672 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.762169 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775535 SAMN22717062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107563/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.256489 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.587038 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.908173 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775536 SAMN22717539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210107566/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.7863917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.351019 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775537 SAMN22717280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210107568/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.990253 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.328009 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.950937 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775538 SAMN22717278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210107570/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.000513 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.021877 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775539 SAMN22717331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107571/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source NP Swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.908436 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.26719 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775540 SAMN22717216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210107573/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.830488 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.892647 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775541 SAMN22717177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107575/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.366188 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.60276 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.255827 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775542 SAMN22717178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210107574/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.878761 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.580414 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775543 SAMN22717194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210107576/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.862135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.59689 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775544 SAMN22717061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210107577/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.758053 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.8657 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775545 SAMN22717330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107579/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.352611 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.612901 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775546 SAMN22717440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107581/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.465296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.06409 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.013775 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775547 SAMN22717439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210107582/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.33711 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.64728 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775548 SAMN22717215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MS-CDC-ASC210107585/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.874993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.216949 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775549 SAMN22717125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210107587/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.455019 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.42179 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775550 SAMN22717222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210107588/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.339423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.896959 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775551 SAMN22717045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210107589/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.706208 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.605596 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775552 SAMN22717329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210107594/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.136271 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.401464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.640879 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775553 SAMN22717538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210107593/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.830101 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.489338 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10775554 SAMN22717055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210107596/2021 collected_by Aegis Sciences Corporation collection_date 2021-06-04 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.840982 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.627728 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated