SRS10866224 SAMN22711286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/WI-CDC-FG-038010/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866225 SAMN22711332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038008/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866226 SAMN22711346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038005/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866227 SAMN22711347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038004/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866228 SAMN22711333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038002/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 28.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866229 SAMN22711348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038001/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866230 SAMN22711334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038000/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 20.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866231 SAMN22711292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037999/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 30.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.619 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866232 SAMN22711293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037998/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.623 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866233 SAMN22711349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-037997/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 53 host_race UNK collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866234 SAMN22711294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037994/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866235 SAMN22711350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-037992/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 27.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866236 SAMN22711295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037991/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 26.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.623 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866237 SAMN22711296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037989/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 27.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866238 SAMN22711327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/IL-CDC-FG-038014/2021 collected_by Fulgent Genetics collection_date 2021-06-11 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 60 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866239 SAMN22711520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038018/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race OTH collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866240 SAMN22711519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038020/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866241 SAMN22711331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038021/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 20.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866242 SAMN22711518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038022/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866243 SAMN22711516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038026/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866244 SAMN22711515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038027/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age <1 host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866245 SAMN22711514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038028/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 49 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866246 SAMN22711290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-038030/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866247 SAMN22711513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038032/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 66 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866248 SAMN22711512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038033/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866249 SAMN22711511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038034/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866250 SAMN22711510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038035/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 26.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866251 SAMN22711509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038037/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866252 SAMN22711508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038038/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866253 SAMN22711507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038042/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race DTA_OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 20.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866254 SAMN22711506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038043/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866255 SAMN22711505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038044/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866256 SAMN22711504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038045/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866257 SAMN22711503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038046/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866258 SAMN22711502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038047/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866259 SAMN22711501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038048/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 25.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866260 SAMN22711500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038049/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 22 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 27.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name A.2.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866261 SAMN22711499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038050/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866262 SAMN22711343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038052/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866263 SAMN22711517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038023/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866264 SAMN22711345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038024/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866265 SAMN22711344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038025/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866266 SAMN22711496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038055/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866267 SAMN22711495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038056/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866268 SAMN22711342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038057/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race UNK collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866269 SAMN22711494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038058/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 28.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866270 SAMN22711493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038059/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866271 SAMN22711492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038060/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 26.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866272 SAMN22711341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038061/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866273 SAMN22711491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038062/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name A.2.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866274 SAMN22711490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038063/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866275 SAMN22711489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038064/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866276 SAMN22711340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038065/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866277 SAMN22711488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038066/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866278 SAMN22711487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038069/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866279 SAMN22711486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038070/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866280 SAMN22711485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038071/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 68 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866281 SAMN22711484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038072/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866282 SAMN22711482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038074/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866283 SAMN22711483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038073/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866284 SAMN22711481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038075/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 73 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866285 SAMN22711480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038076/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866286 SAMN22711498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038053/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866287 SAMN22711497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038054/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 26 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866288 SAMN22711476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038080/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866289 SAMN22711475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038081/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866290 SAMN22711474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038083/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866291 SAMN22711473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038085/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866292 SAMN22711472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038086/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 32 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866293 SAMN22711471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038087/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 25 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866294 SAMN22711470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038088/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866295 SAMN22711339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038089/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866296 SAMN22711469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038090/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866297 SAMN22711338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038091/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866298 SAMN22711468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038093/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 25.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866299 SAMN22711467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038094/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866300 SAMN22711466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038095/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866301 SAMN22711465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038096/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866302 SAMN22711464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038097/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866303 SAMN22711463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038098/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866304 SAMN22711330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038099/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866305 SAMN22711479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038077/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866306 SAMN22711478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038078/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866307 SAMN22711477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038079/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race UNK collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866308 SAMN22711457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038105/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866309 SAMN22711456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038106/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866310 SAMN22711455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038107/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 19 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866311 SAMN22711454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038108/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866312 SAMN22711453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038109/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 10 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866313 SAMN22711337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038110/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 11.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866314 SAMN22711452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038112/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 22.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866315 SAMN22711451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038113/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866316 SAMN22711450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038114/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866317 SAMN22711289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-038115/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 12.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866318 SAMN22711449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038116/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866319 SAMN22711448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038117/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866320 SAMN22711447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038118/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866321 SAMN22711446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038119/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866322 SAMN22711445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038120/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 20.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866323 SAMN22711444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038121/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866324 SAMN22711443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038122/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866325 SAMN22711462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038100/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866326 SAMN22711461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038101/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866327 SAMN22711460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038102/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866328 SAMN22711459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038103/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866329 SAMN22711458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038104/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866330 SAMN22711442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038123/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 26.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866331 SAMN22711439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038126/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 89 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866332 SAMN22711438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038127/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866333 SAMN22711437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038128/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866334 SAMN22711436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038129/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866335 SAMN22711435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038130/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866336 SAMN22711434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038131/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866337 SAMN22711433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038132/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866338 SAMN22711288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-038133/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.623 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866339 SAMN22711336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038134/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866340 SAMN22711432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038135/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866341 SAMN22711431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038136/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866342 SAMN22711430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038137/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866343 SAMN22711429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038138/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866344 SAMN22711428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038139/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866345 SAMN22711427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038140/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866346 SAMN22711426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038141/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866347 SAMN22711425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038142/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866348 SAMN22711424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038143/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866349 SAMN22711423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038144/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866350 SAMN22711422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038145/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866351 SAMN22711419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038149/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866352 SAMN22711418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038150/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866353 SAMN22711417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038151/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.621 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866354 SAMN22711416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038152/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 14 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866355 SAMN22711415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038153/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 12.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866356 SAMN22711414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038154/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866357 SAMN22711413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038155/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 25 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866358 SAMN22711412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038156/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866359 SAMN22711411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038157/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866360 SAMN22711410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038158/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866361 SAMN22711409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038159/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866362 SAMN22711408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038160/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 20.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866363 SAMN22711407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038161/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866364 SAMN22711406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038162/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866365 SAMN22711405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038163/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866366 SAMN22711404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038164/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866367 SAMN22711421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038146/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866368 SAMN22711403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038165/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866369 SAMN22711329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038147/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866370 SAMN22711441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038124/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866371 SAMN22711420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038148/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866372 SAMN22711440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038125/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866373 SAMN22711398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038170/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866374 SAMN22711399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038169/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race UNK collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866375 SAMN22711397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038171/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866376 SAMN22711328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/FL-CDC-FG-038172/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866377 SAMN22711396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038173/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866378 SAMN22711287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-038174/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 20.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.623 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866379 SAMN22711395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038175/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race UNK collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.351 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866380 SAMN22711394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038176/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 49 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866381 SAMN22711392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038178/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 49 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866382 SAMN22711393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038177/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866383 SAMN22711391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038179/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866384 SAMN22711390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038180/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866385 SAMN22711389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038181/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 43 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.0 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866386 SAMN22711388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038182/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866387 SAMN22711387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038183/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866388 SAMN22711386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038184/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.4 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866389 SAMN22711402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038166/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 21.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866390 SAMN22711385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038185/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866391 SAMN22711401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038167/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866392 SAMN22711384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038186/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866393 SAMN22711400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038168/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866394 SAMN22711383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038187/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866395 SAMN22711379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038191/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866396 SAMN22711382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038188/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866397 SAMN22711378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038192/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866398 SAMN22711377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038193/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866399 SAMN22711376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038194/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866400 SAMN22711375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038195/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 12.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866401 SAMN22711374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038196/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866402 SAMN22711373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038197/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866403 SAMN22711372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038198/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866404 SAMN22711371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038199/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866405 SAMN22711370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038200/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 13.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866406 SAMN22711335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-038201/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 11.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866407 SAMN22711369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038202/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 50 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866408 SAMN22711368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038203/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866409 SAMN22711367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038204/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866410 SAMN22711366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038205/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866411 SAMN22711365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038206/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866412 SAMN22711364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038207/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866413 SAMN22711363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038208/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866414 SAMN22711381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038189/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866415 SAMN22711380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038190/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866416 SAMN22711357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038214/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866417 SAMN22711356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038215/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866418 SAMN22711355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038216/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race OTH collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.3 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866419 SAMN22711354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038217/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 28 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.9 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866420 SAMN22711353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038218/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866421 SAMN22711325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/OH-CDC-FG-038219/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 17.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866422 SAMN22711352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038220/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 15.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866423 SAMN22711362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038209/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866424 SAMN22711361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038210/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race UNK collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.1 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866425 SAMN22711360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038211/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 17 host_race DTA collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 19.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866426 SAMN22711359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038212/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 14.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name A.2.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866427 SAMN22711358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038213/2021 collected_by Fulgent Genetics collection_date 2021-06-19 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race NAM collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 16.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866428 SAMN22711322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037944/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866429 SAMN22711323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037943/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866430 SAMN22711321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037950/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866431 SAMN22711320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037951/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866432 SAMN22711319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037952/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866433 SAMN22711318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037955/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866434 SAMN22711317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037956/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866435 SAMN22711316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037957/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866436 SAMN22711315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037958/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866437 SAMN22711314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037959/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866438 SAMN22711313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037960/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866439 SAMN22711312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037961/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866440 SAMN22711523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-037963/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 ThermoFisher TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 ThermoFisher TaqPath diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 ThermoFisher TaqPath diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866441 SAMN22711310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037966/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866442 SAMN22711311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037964/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866443 SAMN22711309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037967/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866444 SAMN22711308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037968/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866445 SAMN22711307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037969/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866446 SAMN22711306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037970/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866447 SAMN22711305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037971/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866448 SAMN22711304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037972/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866449 SAMN22711525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/AL-CDC-FG-037973/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 nCoV_N1 (CT Value) diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 nCoV_N1 (CT Value) diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 nCoV_N1 (CT Value) diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866450 SAMN22711303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037974/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866451 SAMN22711326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/MO-CDC-FG-037975/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 ThermoFisher TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 ThermoFisher TaqPath diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 ThermoFisher TaqPath diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866452 SAMN22711351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CO-CDC-FG-037988/2021 collected_by Fulgent Genetics collection_date 2021-06-17 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race UNK collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 25.6 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866453 SAMN22711524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/AL-CDC-FG-037976/2021 collected_by Fulgent Genetics collection_date 2021-06-13 isolation_source RNA geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 nCoV_N1 (CT Value) diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 nCoV_N1 (CT Value) diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 nCoV_N1 (CT Value) diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866454 SAMN22711298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037982/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866455 SAMN22711297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037984/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.7 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866456 SAMN22711299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037981/2021 collected_by Fulgent Genetics collection_date 2021-06-15 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866457 SAMN22711324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/PA-CDC-FG-037980/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 ThermoFisher TaqPath diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 ThermoFisher TaqPath diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 ThermoFisher TaqPath diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866458 SAMN22711300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037979/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866459 SAMN22711301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037978/2021 collected_by Fulgent Genetics collection_date 2021-06-14 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866460 SAMN22711302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-037977/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source RNA geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device RNA collection_method RNA purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 TAQMAN diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 TAQMAN diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 TAQMAN diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866461 SAMN22711521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038013/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race UNK collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 23.8 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866462 SAMN22711522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/CA-CDC-FG-038012/2021 collected_by Fulgent Genetics collection_date 2021-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 18.2 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10866463 SAMN22711291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731152 PRJNA731152 Isolate SARS-CoV-2/Human/USA/TX-CDC-FG-038011/2021 collected_by Fulgent Genetics collection_date 2021-06-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race AMR collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 SC2 diagnostic_pcr_protocol_1 CDC Flu SC2 diagnostic_pcr_Ct_value_1 24.5 diagnostic_gene_name_2 N1 diagnostic_pcr_protocol_2 CDC Flu SC2 diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 N2 diagnostic_pcr_protocol_3 CDC Flu SC2 diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated