SRS10890699 SAMN22680725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069256/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.216058 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.776746 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890700 SAMN22680726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069255/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.172398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.599809 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890701 SAMN22680727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069254/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.91329 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.359596 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.902551 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890702 SAMN22680741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210069282/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.9741 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.235226 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.425806 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890703 SAMN22680836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069281/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.353678 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.36117 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.474148 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890704 SAMN22680837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069280/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.371843 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.315971 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.811397 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890705 SAMN22680716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069279/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.667725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.762457 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890706 SAMN22680838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069278/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.37613 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.451382 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.422836 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890707 SAMN22680665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069275/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.271788 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.406733 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890708 SAMN22680796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069276/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.729942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.07231 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890709 SAMN22680664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069277/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.019743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.613537 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.745258 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890710 SAMN22680592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210069274/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.535475 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.117697 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890711 SAMN22680717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069273/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.49217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.292581 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890712 SAMN22680666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069271/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.793656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.588438 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890713 SAMN22680667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069270/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.837616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.537121 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890714 SAMN22680797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069272/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.299091 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.529863 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890715 SAMN22680718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069269/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.942132 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.780982 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890716 SAMN22680774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069267/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.625364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.206944 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890717 SAMN22680775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069265/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.85622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.56223 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.458235 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890718 SAMN22680719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069264/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.173975 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.569652 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890719 SAMN22680721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069260/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.185223 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.757023 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.72606 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890720 SAMN22680720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069261/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.646296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.321554 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890721 SAMN22680722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069259/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.373272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.39782 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.353233 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890722 SAMN22680723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069258/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.9582 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.584354 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890723 SAMN22680724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069257/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.343676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.836515 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890724 SAMN22680548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210069289/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.18925 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.7863 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890725 SAMN22680773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069288/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.561646 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.327366 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890726 SAMN22680771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069291/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.730691 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.765116 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890727 SAMN22680772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069290/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.597618 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.567583 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890728 SAMN22680825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069292/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.122942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.36923 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.021414 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890729 SAMN22680795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069293/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.839762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.757929 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.790466 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890730 SAMN22680847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210069294/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.364635 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.135723 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890731 SAMN22680824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069295/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.56075 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.284279 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.653172 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890732 SAMN22680585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210069296/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.51993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.076384 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.522808 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890733 SAMN22680663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069299/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.243347 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.338845 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890734 SAMN22680840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210069301/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.300266 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.781355 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.819525 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890735 SAMN22680662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069300/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.999423 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.414673 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.623597 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890736 SAMN22680661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069302/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.579227 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.906122 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890737 SAMN22680823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069303/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source NP Swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.890457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.941195 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.188166 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890738 SAMN22680660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069304/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.192158 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.823263 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.316526 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890739 SAMN22680834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069305/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.324936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.392158 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.654802 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890740 SAMN22680822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069306/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.402301 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.975636 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890741 SAMN22680794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069309/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.716402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.177052 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890742 SAMN22680833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069311/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.869509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.434141 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.40326 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890743 SAMN22680715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069310/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.095404 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.88516 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.506144 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890744 SAMN22680848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AK-CDC-ASC210069283/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.1762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.177155 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.226988 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890745 SAMN22680835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069286/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.310005 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.658587 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.394794 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890746 SAMN22680632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069285/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.298471 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.785463 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.5362 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890747 SAMN22680713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069314/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.765282 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.67767 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890748 SAMN22680712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069315/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.854498 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.685837 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.883997 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890749 SAMN22680711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069316/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.415172 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.203522 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.843233 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890750 SAMN22680710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069317/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.657536 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.403305 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890751 SAMN22680708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069319/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.110167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.754982 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.479195 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890752 SAMN22680709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069318/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.994585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.723755 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890753 SAMN22680707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069321/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.941561 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.991566 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890754 SAMN22680631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069323/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.558838 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.385183 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.16985 lineage/clade name R.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890755 SAMN22680770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069324/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.39065 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.690023 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890756 SAMN22680705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069326/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.303343 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.26402 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890757 SAMN22680603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069327/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.256987 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.553907 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.428333 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890758 SAMN22680706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069325/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.8911 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.442795 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890759 SAMN22680602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069330/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.80307 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.713543 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890760 SAMN22680541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210069328/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.623386 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.305332 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.989426 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890761 SAMN22680659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069332/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.787281 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.601913 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890762 SAMN22680769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069331/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.258021 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.938508 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.327956 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890763 SAMN22680737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069334/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.430508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.571817 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890764 SAMN22680601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069333/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.148638 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.429953 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890765 SAMN22680793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069336/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.546133 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 28.05513 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890766 SAMN22680736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069337/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 30.264603 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 29.185392 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890767 SAMN22680555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210069312/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.055279 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.258469 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890768 SAMN22680714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069313/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.725414 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.669405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.63183 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890769 SAMN22680767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069343/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source NP Swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.871782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.002987 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.880867 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890770 SAMN22680766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069344/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.18841 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.434221 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890771 SAMN22680581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069345/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.095038 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.556324 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.838871 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890772 SAMN22680629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069346/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.557457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.31899 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.984359 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890773 SAMN22680740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210069347/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.500487 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.767689 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890774 SAMN22680658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069349/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.285585 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.727531 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890775 SAMN22680554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210069351/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.445154 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.647152 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890776 SAMN22680628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069350/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.980408 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.478441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.016762 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890777 SAMN22680638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210069353/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.383942 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.231308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.853993 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890778 SAMN22680832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069354/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.8795853 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.329584 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.250538 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890779 SAMN22680627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069355/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.808614 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.45664 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890780 SAMN22680745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210069356/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.385654 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.279343 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890781 SAMN22680637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210069358/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.194996 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.796381 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.323256 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890782 SAMN22680831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069357/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.003542 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.79069 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.8082 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890783 SAMN22680617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069359/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.48685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.969915 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890784 SAMN22680780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210069360/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.215908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.957327 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.685766 lineage/clade name B.1.336 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890785 SAMN22680616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069361/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.393406 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.208918 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890786 SAMN22680657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069365/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.09187 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 36.043526 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.035892 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890787 SAMN22680630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069339/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.384577 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.669392 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.35744 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890788 SAMN22680765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069368/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.8012905 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.927411 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.5373535 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890789 SAMN22680768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069341/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.371801 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.916145 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890790 SAMN22680580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069367/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.545818 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.97892 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.81183 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890791 SAMN22680582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069342/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.631059 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.373004 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.795511 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890792 SAMN22680655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069371/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.345776 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.260002 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.30596 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890793 SAMN22680654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069373/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.646683 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.660942 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890794 SAMN22680579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069372/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.251364 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.279127 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890795 SAMN22680800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210069374/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.334552 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.140499 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.084499 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890796 SAMN22680584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210069375/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.305421 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.655112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.120865 lineage/clade name B.1.351 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890797 SAMN22680600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069376/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.64492 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.20464 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.42402 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890798 SAMN22680599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069377/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.171127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.01953 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890799 SAMN22680583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/SC-CDC-ASC210069378/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.8406315 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.642435 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.966123 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890800 SAMN22680598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069379/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.699333 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.8082 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890801 SAMN22680763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069382/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.551043 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.512087 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890802 SAMN22680762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069383/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.499146 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.666325 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890803 SAMN22680846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210069385/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.753548 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.338291 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890804 SAMN22680792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069387/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.601834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.142962 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.674812 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890805 SAMN22680553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210069386/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.79598 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.970776 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890806 SAMN22680547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210069389/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.362787 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.316664 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890807 SAMN22680791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069388/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.389359 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.671207 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890808 SAMN22680546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210069390/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.166851 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.5636425 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890809 SAMN22680761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069384/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.96558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.348843 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890810 SAMN22680653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069392/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.93773 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 10.836932 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.735442 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890811 SAMN22680615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069391/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 21 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.026001 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.192831 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890812 SAMN22680764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069369/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.125286 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.689913 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.808374 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890813 SAMN22680656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069370/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.660883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.149119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.169281 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890814 SAMN22680552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210069396/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.54088 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.381357 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.385328 lineage/clade name B.1.1.222 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890815 SAMN22680704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069398/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.473753 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.792187 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890816 SAMN22680703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069399/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.305676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.229052 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890817 SAMN22680821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069400/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.914341 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.144405 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890818 SAMN22680578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069402/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.977446 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.564444 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.33942 lineage/clade name B.1.438.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890819 SAMN22680626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069403/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.078554 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.34558 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.517862 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890820 SAMN22680577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069404/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.63512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.509768 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890821 SAMN22680625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069405/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.615562 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.215553 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.268064 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890822 SAMN22680576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069406/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.992205 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.103998 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890823 SAMN22680624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069407/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.983044 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.541056 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.019451 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890824 SAMN22680575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069408/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.299622 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.759186 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.099329 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890825 SAMN22680623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069409/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.622563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.0412035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.553646 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890826 SAMN22680622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069411/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.502866 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.615471 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.7466545 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890827 SAMN22680574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069410/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.720103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.814985 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.513997 lineage/clade name B.1.438.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890828 SAMN22680573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069412/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.119372 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.429689 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890829 SAMN22680621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069414/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.364747 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.872616 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.619965 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890830 SAMN22680572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069413/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.225743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.444135 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890831 SAMN22680778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210069394/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.787103 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.495571 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890832 SAMN22680779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210069393/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.348316 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.18107 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890833 SAMN22680744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210069395/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source NP Swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.892455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.735603 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890834 SAMN22680735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069421/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.15948 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.576046 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890835 SAMN22680777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210069420/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.777797 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.965427 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890836 SAMN22680597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069422/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.977917 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.623827 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890837 SAMN22680635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210069423/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.807546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.5742445 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890838 SAMN22680734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069424/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.47563 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.783777 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890839 SAMN22680733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069425/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.792166 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.626667 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890840 SAMN22680702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069426/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.628092 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.600752 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890841 SAMN22680776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/GA-CDC-ASC210069427/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.576437 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.277946 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890842 SAMN22680845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210069428/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.852435 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.821624 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890843 SAMN22680613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069431/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.035656 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.718686 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.292661 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890844 SAMN22680844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210069429/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.161184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.450256 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890845 SAMN22680652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069432/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.954557 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.639486 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.269941 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890846 SAMN22680701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069435/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.639217 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.033179 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890847 SAMN22680544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210069436/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.501558 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.777987 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890848 SAMN22680799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210069437/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.524507 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.905403 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890849 SAMN22680700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069439/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.38482 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.499173 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890850 SAMN22680798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/DE-CDC-ASC210069440/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.151167 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.835112 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.819683 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890851 SAMN22680545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/VA-CDC-ASC210069415/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.538248 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.030193 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.53986 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890852 SAMN22680743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IN-CDC-ASC210069417/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.835428 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.215968 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.217915 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890853 SAMN22680820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069416/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-09 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.396783 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.713551 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890854 SAMN22680819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069418/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 8.7613325 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 9.1696615 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 8.0937605 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890855 SAMN22680614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069419/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal Swab collection_method Nasal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.477936 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.240816 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.35886 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890856 SAMN22680591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210069441/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.79184 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.90497 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.824072 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890857 SAMN22680651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069554/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.202512 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.710225 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890858 SAMN22680830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069555/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.19229 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.985167 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890859 SAMN22680742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/KS-CDC-ASC210069558/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.698679 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.989557 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890860 SAMN22680633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210069557/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 28.31275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.646175 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.358313 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890861 SAMN22680790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069559/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.11675 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.443256 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890862 SAMN22680732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069561/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.823586 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.204268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.628708 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890863 SAMN22680760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069562/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.962591 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.443531 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890864 SAMN22680611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069563/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.080344 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.104693 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890865 SAMN22680789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069564/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.574568 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.629293 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890866 SAMN22680787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069569/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.55071 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.775043 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890867 SAMN22680788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069568/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 26.858398 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.839298 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890868 SAMN22680786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069570/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.635078 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.140408 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.450418 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890869 SAMN22680785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069571/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.906946 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.485308 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890870 SAMN22680650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069572/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.599144 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.509278 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890871 SAMN22680699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069574/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.257677 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.528425 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890872 SAMN22680698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069575/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.360662 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.282936 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890873 SAMN22680697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069576/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.50135 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.852337 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890874 SAMN22680695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069578/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.940067 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.210478 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.180033 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890875 SAMN22680696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069577/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.9915 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.425217 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890876 SAMN22680694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069579/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.791418 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.519817 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.956747 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890877 SAMN22680634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NC-CDC-ASC210069550/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.800941 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.490047 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890878 SAMN22680612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069552/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.408712 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.494553 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890879 SAMN22680692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069583/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.481714 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.766123 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890880 SAMN22680691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069584/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.6566305 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.622019 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890881 SAMN22680690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069585/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.491839 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.368482 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890882 SAMN22680689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069586/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.195909 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.329405 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890883 SAMN22680688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069587/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.413768 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.195098 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890884 SAMN22680731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069591/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 7.135791 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 9.3245125 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890885 SAMN22680686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069592/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.21616 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.802124 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.778599 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890886 SAMN22680685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069593/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.176908 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 27.734947 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.59155 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890887 SAMN22680684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069594/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.858778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.542637 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890888 SAMN22680843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210069595/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.671976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.275267 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.87841 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890889 SAMN22680683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069596/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.72116 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.530966 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890890 SAMN22680549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/UT-CDC-ASC210069597/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.6296 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.647215 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890891 SAMN22680842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AL-CDC-ASC210069598/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.750145 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.282488 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.917606 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890892 SAMN22680682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069600/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.1589 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.916614 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890893 SAMN22680649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069599/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.635431 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.504185 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.151337 lineage/clade name B.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890894 SAMN22680648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069601/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.175976 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.854105 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890895 SAMN22680681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069602/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.245813 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.5618515 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.676294 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890896 SAMN22680759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069580/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.355381 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 20.43911 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.782192 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890897 SAMN22680647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069603/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.165462 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.509699 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890898 SAMN22680829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210069581/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.439508 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.073406 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.679993 lineage/clade name B.1.1.318 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890899 SAMN22680693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069582/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.491701 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.843187 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.516802 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890900 SAMN22680818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069607/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.109581 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.673891 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890901 SAMN22680817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069608/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.514643 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.48025 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890902 SAMN22680540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WV-CDC-ASC210069609/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.948559 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.846138 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890903 SAMN22680639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MO-CDC-ASC210069610/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.480267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.547272 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.321712 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890904 SAMN22680758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069611/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.738127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.284206 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.336197 lineage/clade name B.1.351 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890905 SAMN22680596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PA-CDC-ASC210069588/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.351096 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.900277 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890906 SAMN22680687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069589/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.559441 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.489338 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890907 SAMN22680815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069613/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.502134 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.499405 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.990904 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890908 SAMN22680816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069612/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.818547 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.068692 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.719711 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890909 SAMN22680841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AR-CDC-ASC210069615/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.155811 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.0698 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.616396 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890910 SAMN22680610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069614/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.475758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.936829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.185457 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890911 SAMN22680757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069619/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 25.338394 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.921225 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890912 SAMN22680542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210069618/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 25 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.370085 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.689113 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.335467 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890913 SAMN22680543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/WI-CDC-ASC210069617/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.293625 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.806093 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890914 SAMN22680645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069620/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.332676 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.257437 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890915 SAMN22680606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210069621/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.180036 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.920581 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890916 SAMN22680680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069622/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.006521 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.962662 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890917 SAMN22680679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069623/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.172264 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.011953 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890918 SAMN22680678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069625/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.522203 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.851591 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.45519 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890919 SAMN22680646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069604/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.6128645 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.720269 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890920 SAMN22680605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210069626/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.910993 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.713467 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890921 SAMN22680676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069630/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.6690235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.290441 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.856124 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890922 SAMN22680551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210069606/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 29.181032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.201538 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 27.66753 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890923 SAMN22680609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069633/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.635778 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.951412 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.513502 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890924 SAMN22680643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069632/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.487031 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.715967 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890925 SAMN22680595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210069634/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.340546 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.470549 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890926 SAMN22680839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/AZ-CDC-ASC210069635/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.827086 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.337585 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.330621 lineage/clade name B.1.351 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890927 SAMN22680675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069636/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.016918 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.827927 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890928 SAMN22680674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069637/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.72821 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.027694 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890929 SAMN22680642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069638/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.913236 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.04587 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890930 SAMN22680594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210069639/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.256235 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.777777 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890931 SAMN22680571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069923/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.802982 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 11.278583 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.2678795 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890932 SAMN22680570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069924/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.543272 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.55319 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890933 SAMN22680784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069926/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.350529 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.237656 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890934 SAMN22680756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069927/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.751032 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.292095 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890935 SAMN22680755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069928/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.662657 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.449953 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.14531 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890936 SAMN22680636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MT-CDC-ASC210069930/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Montana host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.529817 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.585149 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890937 SAMN22680783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069929/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.143366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.917315 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890938 SAMN22680782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210069931/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.718777 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.837769 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890939 SAMN22680604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/OH-CDC-ASC210069627/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.092758 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 10.3952265 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890940 SAMN22680644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069628/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.930127 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.238356 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890941 SAMN22680567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069937/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source NP Swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.669382 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.246433 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890942 SAMN22680566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069938/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.61285 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.41261 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890943 SAMN22680677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069629/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.130402 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.771381 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890944 SAMN22680565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069940/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.555965 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.74856 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890945 SAMN22680563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069943/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.779583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.245218 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890946 SAMN22680564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069942/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.609509 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 24.143353 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890947 SAMN22680562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069944/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.695808 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.466784 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890948 SAMN22680561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069945/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.771825 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.434977 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890949 SAMN22680560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069946/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.784573 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.462896 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.400364 lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890950 SAMN22680641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069948/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.740726 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.529638 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890951 SAMN22680608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069949/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 10.027751 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.207013 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.201845 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890952 SAMN22680593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/PR-CDC-ASC210069951/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.118366 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.659706 lineage/clade name B.1.525 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890953 SAMN22680754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069952/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.376883 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.131405 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890954 SAMN22680620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069950/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.183457 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.774976 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890955 SAMN22680738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210069953/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.071007 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.356028 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.844313 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890956 SAMN22680673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069954/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.093493 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.307343 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890957 SAMN22680590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210069956/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.914097 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.363918 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890958 SAMN22680812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069957/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.4310875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.56166 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890959 SAMN22680813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069933/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.344725 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.316223 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890960 SAMN22680739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MA-CDC-ASC210069934/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.783882 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.634177 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890961 SAMN22680814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069932/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.260473 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.659124 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890962 SAMN22680569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069935/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 11.761275 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.418216 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890963 SAMN22680568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069936/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.143363 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.897894 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890964 SAMN22680730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069970/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.724524 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.24814 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890965 SAMN22680557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069969/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.616265 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.525715 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890966 SAMN22680753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069973/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.468113 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.360308 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.768858 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890967 SAMN22680729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069971/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.640278 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.781696 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.48786 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890968 SAMN22680618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069974/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.87762 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.482294 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.480589 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890969 SAMN22680640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MN-CDC-ASC210069975/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-10 isolation_source Nasal - Anterior Nares geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.381283 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.629611 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890970 SAMN22680752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069976/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.906267 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.822512 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.829799 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890971 SAMN22680751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069977/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.251551 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.93648 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890972 SAMN22680750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069978/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.692191 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.214448 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890973 SAMN22680728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MD-CDC-ASC210069979/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-11 isolation_source Nasal - Anterior Nares geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.647875 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.96513 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890974 SAMN22680749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069980/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.217287 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.289665 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890975 SAMN22680748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069983/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 23.974949 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 25.364843 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.808147 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890976 SAMN22680747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069984/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.922274 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 23.35864 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.855762 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890977 SAMN22680556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069985/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.658422 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 21.817669 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.689358 lineage/clade name B.1.351 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890978 SAMN22680746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/IL-CDC-ASC210069986/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.792583 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.582548 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890979 SAMN22680672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069991/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 24.726107 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 32.619926 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 25.029646 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890980 SAMN22680671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069992/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 20.423319 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 28.827871 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.050592 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890981 SAMN22680670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069993/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 22.127684 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 30.06761 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 22.104383 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890982 SAMN22680669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210069994/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.945673 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 24.978048 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.388037 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890983 SAMN22680619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NJ-CDC-ASC210069958/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.898742 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.857371 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.496052 lineage/clade name B.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890984 SAMN22680589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210069995/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.549816 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 22.185287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 21.469185 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890985 SAMN22680559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069967/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.468782 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 20.458052 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890986 SAMN22680558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TN-CDC-ASC210069968/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.780815 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.269487 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890987 SAMN22680588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210069998/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.198538 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 15.959897 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.338636 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890988 SAMN22680607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/NY-CDC-ASC210069999/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.001511 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.58987 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890989 SAMN22680587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210070000/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.16639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.760397 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890990 SAMN22680809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070001/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 13.435655 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.591975 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890991 SAMN22680550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/TX-CDC-ASC210070002/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Native HI or Other Pacific Isl collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.5378685 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.277431 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890992 SAMN22680586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/RI-CDC-ASC210070003/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source NP Swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device NP Swab collection_method NP Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 9.822834 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 12.262255 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 11.348381 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890993 SAMN22680828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210070004/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.016977 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 17.609829 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.89312 lineage/clade name B.1.427 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890994 SAMN22680827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210070005/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-13 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.001198 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.656311 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.747537 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890995 SAMN22680808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070101/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 27.228651 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 26.17119 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 26.02408 lineage/clade name B.1.526.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890996 SAMN22680826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CA-CDC-ASC210070006/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.030244 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 17.302032 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890997 SAMN22680807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070102/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 17.62639 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 16.822233 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.21305 lineage/clade name B.1.526.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890998 SAMN22680806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070104/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-12 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.842606 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.54376 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.575548 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10890999 SAMN22680781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/FL-CDC-ASC210070103/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Asian collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 19.478767 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.381441 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891000 SAMN22680805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070105/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.165455 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.35281 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 15.522726 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891001 SAMN22680803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070107/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 14.222731 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 14.617792 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 13.791723 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891002 SAMN22680802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070108/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.371822 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 18.746082 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 18.744833 lineage/clade name B.1.429 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891003 SAMN22680804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070106/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 15.406232 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.887268 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 14.350133 lineage/clade name B.1.526 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891004 SAMN22680801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210070109/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 12.814379 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 13.1065035 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 12.586907 lineage/clade name B.1.1.519 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891005 SAMN22680811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069996/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 18.870241 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 19.461287 diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 19.634878 lineage/clade name P.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891006 SAMN22680810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/CO-CDC-ASC210069997/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 16.87401 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 16.603325 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS10891008 SAMN22680668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 731148 PRJNA731148 Isolate SARS-CoV-2/Human/USA/MI-CDC-ASC210070110/2021 collected_by Aegis Sciences Corporation collection_date 2021-04-14 isolation_source Nasal - Anterior Nares geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal - Anterior Nares collection_method Nasal - Anterior Nares purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N gene diagnostic_pcr_protocol_1 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_1 21.26743 diagnostic_gene_name_2 S gene diagnostic_pcr_protocol_2 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 ORF1ab diagnostic_pcr_protocol_3 TaqPath COVID-19 Combo Kit diagnostic_pcr_Ct_value_3 23.508705 lineage/clade name B.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated