SRX12948934 QDX29691339 <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891007"> <IDENTIFIERS> <PRIMARY_ID>SRS10891007</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX29691339/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948935" alias="QDX29691337"> <IDENTIFIERS> <PRIMARY_ID>SRX12948935</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691337</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891010"> <IDENTIFIERS> <PRIMARY_ID>SRS10891010</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX29691337/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948936" alias="QDX29691336"> <IDENTIFIERS> <PRIMARY_ID>SRX12948936</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691336</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891009"> <IDENTIFIERS> <PRIMARY_ID>SRS10891009</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX29691336/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948937" alias="QDX29691335"> <IDENTIFIERS> <PRIMARY_ID>SRX12948937</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691335</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891011"> <IDENTIFIERS> <PRIMARY_ID>SRS10891011</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX29691335/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948938" alias="QDX29691333"> <IDENTIFIERS> <PRIMARY_ID>SRX12948938</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691333</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891012"> <IDENTIFIERS> <PRIMARY_ID>SRS10891012</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX29691333/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948939" alias="QDX29691332"> <IDENTIFIERS> <PRIMARY_ID>SRX12948939</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691332</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891013"> <IDENTIFIERS> <PRIMARY_ID>SRS10891013</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX29691332/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948940" alias="QDX29691331"> <IDENTIFIERS> <PRIMARY_ID>SRX12948940</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691331</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891014"> <IDENTIFIERS> <PRIMARY_ID>SRS10891014</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX29691331/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948941" alias="QDX29691328"> <IDENTIFIERS> <PRIMARY_ID>SRX12948941</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691328</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891016"> <IDENTIFIERS> <PRIMARY_ID>SRS10891016</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MS-CDC-QDX29691296/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948943" alias="QDX29691376"> <IDENTIFIERS> <PRIMARY_ID>SRX12948943</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691376</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891017"> <IDENTIFIERS> <PRIMARY_ID>SRS10891017</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX29691376/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948944" alias="QDX29691374"> <IDENTIFIERS> <PRIMARY_ID>SRX12948944</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691374</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891018"> <IDENTIFIERS> <PRIMARY_ID>SRS10891018</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX29691374/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12948946" alias="QDX29691372"> <IDENTIFIERS> <PRIMARY_ID>SRX12948946</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691372</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891020"> <IDENTIFIERS> <PRIMARY_ID>SRS10891020</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX29691372/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891080"> <IDENTIFIERS> <PRIMARY_ID>SRS10891080</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX29691508/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949005" alias="QDX29691509"> <IDENTIFIERS> <PRIMARY_ID>SRX12949005</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691509</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891079"> <IDENTIFIERS> <PRIMARY_ID>SRS10891079</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX29691509/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949006" alias="QDX29691510"> <IDENTIFIERS> <PRIMARY_ID>SRX12949006</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691510</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891078"> <IDENTIFIERS> <PRIMARY_ID>SRS10891078</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX29691510/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949007" alias="QDX29691511"> <IDENTIFIERS> <PRIMARY_ID>SRX12949007</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691511</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891081"> <IDENTIFIERS> <PRIMARY_ID>SRS10891081</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX29691511/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891088"> <IDENTIFIERS> <PRIMARY_ID>SRS10891088</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KS-CDC-QDX29691516/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949015" alias="QDX29691520"> <IDENTIFIERS> 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891204"> <IDENTIFIERS> <PRIMARY_ID>SRS10891204</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MA-CDC-QDX29691789/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949131" alias="QDX29691790"> <IDENTIFIERS> <PRIMARY_ID>SRX12949131</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691790</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891205"> <IDENTIFIERS> <PRIMARY_ID>SRS10891205</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691790/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949132" alias="QDX29691792"> <IDENTIFIERS> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891214"> <IDENTIFIERS> <PRIMARY_ID>SRS10891214</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691801/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949141" alias="QDX29691802"> <IDENTIFIERS> <PRIMARY_ID>SRX12949141</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691802</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891217"> <IDENTIFIERS> <PRIMARY_ID>SRS10891217</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691802/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> 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</LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949143" alias="QDX29691804"> <IDENTIFIERS> <PRIMARY_ID>SRX12949143</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691804</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891215"> <IDENTIFIERS> <PRIMARY_ID>SRS10891215</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691804/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949144" alias="QDX29691806"> <IDENTIFIERS> <PRIMARY_ID>SRX12949144</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691806</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891219"> <IDENTIFIERS> <PRIMARY_ID>SRS10891219</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691806/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949146" alias="QDX29691808"> <IDENTIFIERS> <PRIMARY_ID>SRX12949146</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691808</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891218"> <IDENTIFIERS> <PRIMARY_ID>SRS10891218</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691808/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949147" alias="QDX29691809"> <IDENTIFIERS> <PRIMARY_ID>SRX12949147</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691809</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891221"> <IDENTIFIERS> <PRIMARY_ID>SRS10891221</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX29691809/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949148" alias="QDX29691810"> <IDENTIFIERS> <PRIMARY_ID>SRX12949148</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691810</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891222"> <IDENTIFIERS> <PRIMARY_ID>SRS10891222</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX29691810/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949149" alias="QDX29691786"> <IDENTIFIERS> <PRIMARY_ID>SRX12949149</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691786</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891224"> <IDENTIFIERS> <PRIMARY_ID>SRS10891224</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX29691786/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949150" alias="QDX29691816"> <IDENTIFIERS> <PRIMARY_ID>SRX12949150</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691816</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891223"> <IDENTIFIERS> <PRIMARY_ID>SRS10891223</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VT-CDC-QDX29691816/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949151" alias="QDX29691817"> <IDENTIFIERS> <PRIMARY_ID>SRX12949151</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691817</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891225"> <IDENTIFIERS> <PRIMARY_ID>SRS10891225</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX29691817/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949152" alias="QDX29691818"> <IDENTIFIERS> <PRIMARY_ID>SRX12949152</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691818</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891226"> <IDENTIFIERS> <PRIMARY_ID>SRS10891226</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX29691818/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949153" alias="QDX29691819"> <IDENTIFIERS> <PRIMARY_ID>SRX12949153</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691819</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891227"> <IDENTIFIERS> <PRIMARY_ID>SRS10891227</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX29691819/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691821/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949156" alias="QDX29691822"> <IDENTIFIERS> <PRIMARY_ID>SRX12949156</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691822</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891230"> <IDENTIFIERS> <PRIMARY_ID>SRS10891230</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NH-CDC-QDX29691822/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949157" alias="QDX29691823"> <IDENTIFIERS> <PRIMARY_ID>SRX12949157</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691823</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891231"> <IDENTIFIERS> <PRIMARY_ID>SRS10891231</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/ME-CDC-QDX29691823/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949158" alias="QDX29691824"> <IDENTIFIERS> <PRIMARY_ID>SRX12949158</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691824</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891233"> <IDENTIFIERS> <PRIMARY_ID>SRS10891233</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/ME-CDC-QDX29691824/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949159" alias="QDX29691825"> <IDENTIFIERS> 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<SAMPLE_DESCRIPTOR accession="SRS10891265"> <IDENTIFIERS> <PRIMARY_ID>SRS10891265</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MN-CDC-QDX29691892/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949193" alias="QDX29691897"> <IDENTIFIERS> <PRIMARY_ID>SRX12949193</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691897</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891267"> <IDENTIFIERS> <PRIMARY_ID>SRS10891267</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MN-CDC-QDX29691897/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949194" alias="QDX29691902"> <IDENTIFIERS> <PRIMARY_ID>SRX12949194</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691902</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891266"> <IDENTIFIERS> <PRIMARY_ID>SRS10891266</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MN-CDC-QDX29691902/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949195" alias="QDX29691915"> <IDENTIFIERS> <PRIMARY_ID>SRX12949195</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691915</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891268"> <IDENTIFIERS> <PRIMARY_ID>SRS10891268</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WI-CDC-QDX29691915/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949196" alias="QDX29691943"> <IDENTIFIERS> <PRIMARY_ID>SRX12949196</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691943</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891270"> <IDENTIFIERS> <PRIMARY_ID>SRS10891270</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691943/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949197" alias="QDX29691944"> <IDENTIFIERS> <PRIMARY_ID>SRX12949197</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691944</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891271"> <IDENTIFIERS> <PRIMARY_ID>SRS10891271</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691944/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949198" alias="QDX29691947"> <IDENTIFIERS> <PRIMARY_ID>SRX12949198</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691947</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891272"> <IDENTIFIERS> <PRIMARY_ID>SRS10891272</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691947/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691953/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949201" alias="QDX29691955"> <IDENTIFIERS> <PRIMARY_ID>SRX12949201</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691955</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891276"> <IDENTIFIERS> <PRIMARY_ID>SRS10891276</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691956/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949203" alias="QDX29691959"> <IDENTIFIERS> <PRIMARY_ID>SRX12949203</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691959</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891277"> <IDENTIFIERS> <PRIMARY_ID>SRS10891277</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691959/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949204" alias="QDX29691962"> <IDENTIFIERS> <PRIMARY_ID>SRX12949204</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691962</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891278"> <IDENTIFIERS> <PRIMARY_ID>SRS10891278</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691962/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949205" alias="QDX29691963"> <IDENTIFIERS> <PRIMARY_ID>SRX12949205</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691963</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891279"> <IDENTIFIERS> <PRIMARY_ID>SRS10891279</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691963/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949208" alias="QDX29691967"> <IDENTIFIERS> <PRIMARY_ID>SRX12949208</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691967</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891282"> <IDENTIFIERS> <PRIMARY_ID>SRS10891282</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691967/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949209" alias="QDX29691968"> <IDENTIFIERS> <PRIMARY_ID>SRX12949209</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691968</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891283"> <IDENTIFIERS> <PRIMARY_ID>SRS10891283</PRIMARY_ID> <EXTERNAL_ID 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<SAMPLE_DESCRIPTOR accession="SRS10891284"> <IDENTIFIERS> <PRIMARY_ID>SRS10891284</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WI-CDC-QDX29691876/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949211" alias="QDX29691969"> <IDENTIFIERS> <PRIMARY_ID>SRX12949211</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691969</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891285"> <IDENTIFIERS> <PRIMARY_ID>SRS10891285</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691969/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949212" alias="QDX29691971"> <IDENTIFIERS> <PRIMARY_ID>SRX12949212</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691971</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891286"> <IDENTIFIERS> <PRIMARY_ID>SRS10891286</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691971/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949213" alias="QDX29691877"> <IDENTIFIERS> <PRIMARY_ID>SRX12949213</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691877</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891287"> <IDENTIFIERS> <PRIMARY_ID>SRS10891287</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WI-CDC-QDX29691877/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949214" alias="QDX29691878"> <IDENTIFIERS> <PRIMARY_ID>SRX12949214</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691878</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891288"> <IDENTIFIERS> <PRIMARY_ID>SRS10891288</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WI-CDC-QDX29691878/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949216" alias="QDX29691975"> <IDENTIFIERS> <PRIMARY_ID>SRX12949216</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691975</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891290"> <IDENTIFIERS> <PRIMARY_ID>SRS10891290</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691975/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949218" alias="QDX29691977"> <IDENTIFIERS> <PRIMARY_ID>SRX12949218</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691977</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891292"> <IDENTIFIERS> <PRIMARY_ID>SRS10891292</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX29691977/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949219" alias="QDX29691978"> <IDENTIFIERS> <PRIMARY_ID>SRX12949219</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691978</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891294"> <IDENTIFIERS> <PRIMARY_ID>SRS10891294</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX29691980/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949221" alias="QDX29691982"> <IDENTIFIERS> <PRIMARY_ID>SRX12949221</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691982</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891295"> <IDENTIFIERS> <PRIMARY_ID>SRS10891295</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX29691982/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949222" alias="QDX29691991"> <IDENTIFIERS> <PRIMARY_ID>SRX12949222</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691991</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891296"> <IDENTIFIERS> <PRIMARY_ID>SRS10891296</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WV-CDC-QDX29691991/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949225" alias="QDX29691995"> <IDENTIFIERS> <PRIMARY_ID>SRX12949225</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691995</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891300"> <IDENTIFIERS> <PRIMARY_ID>SRS10891300</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29691995/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949227" alias="QDX29691997"> <IDENTIFIERS> <PRIMARY_ID>SRX12949227</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691997</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891301"> <IDENTIFIERS> <PRIMARY_ID>SRS10891301</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29691997/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949228" alias="QDX29691998"> <IDENTIFIERS> <PRIMARY_ID>SRX12949228</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691998</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891302"> <IDENTIFIERS> <PRIMARY_ID>SRS10891302</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29691998/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949229" alias="QDX29692001"> <IDENTIFIERS> <PRIMARY_ID>SRX12949229</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692001</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891303"> <IDENTIFIERS> <PRIMARY_ID>SRS10891303</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29692001/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949230" alias="QDX29692002"> <IDENTIFIERS> <PRIMARY_ID>SRX12949230</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692002</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891304"> <IDENTIFIERS> <PRIMARY_ID>SRS10891304</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29692002/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949231" alias="QDX29692003"> <IDENTIFIERS> <PRIMARY_ID>SRX12949231</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692003</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891305"> <IDENTIFIERS> <PRIMARY_ID>SRS10891305</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29692003/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949232" alias="QDX29692004"> <IDENTIFIERS> <PRIMARY_ID>SRX12949232</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692004</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891306"> <IDENTIFIERS> <PRIMARY_ID>SRS10891306</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WV-CDC-QDX29692004/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949233" alias="QDX29692006"> <IDENTIFIERS> <PRIMARY_ID>SRX12949233</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692006</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891307"> <IDENTIFIERS> <PRIMARY_ID>SRS10891307</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29692006/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949234" alias="QDX29692016"> <IDENTIFIERS> <PRIMARY_ID>SRX12949234</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692016</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891308"> <IDENTIFIERS> <PRIMARY_ID>SRS10891308</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX29692016/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949236" alias="QDX29691972"> <IDENTIFIERS> <PRIMARY_ID>SRX12949236</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29691972</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891310"> <IDENTIFIERS> <PRIMARY_ID>SRS10891310</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX29691972/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949237" alias="QDX29692028"> <IDENTIFIERS> <PRIMARY_ID>SRX12949237</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX29692028</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891430"> <IDENTIFIERS> <PRIMARY_ID>SRS10891430</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WA-CDC-QDX30084821/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949357" alias="QDX30084822"> <IDENTIFIERS> 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<SAMPLE_DESCRIPTOR accession="SRS10891509"> <IDENTIFIERS> <PRIMARY_ID>SRS10891509</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX30084905/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949436" alias="QDX30129469"> <IDENTIFIERS> <PRIMARY_ID>SRX12949436</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129469</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891510"> <IDENTIFIERS> <PRIMARY_ID>SRS10891510</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129469/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949437" alias="QDX30129470"> <IDENTIFIERS> <PRIMARY_ID>SRX12949437</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129470</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891511"> <IDENTIFIERS> <PRIMARY_ID>SRS10891511</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129470/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949438" alias="QDX30129471"> <IDENTIFIERS> <PRIMARY_ID>SRX12949438</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129471</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891513"> <IDENTIFIERS> <PRIMARY_ID>SRS10891513</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129471/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949439" alias="QDX30129473"> <IDENTIFIERS> <PRIMARY_ID>SRX12949439</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129473</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891512"> <IDENTIFIERS> <PRIMARY_ID>SRS10891512</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129473/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949440" alias="QDX30129475"> <IDENTIFIERS> <PRIMARY_ID>SRX12949440</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129475</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891514"> <IDENTIFIERS> <PRIMARY_ID>SRS10891514</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129475/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129480/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949444" alias="QDX30129483"> <IDENTIFIERS> <PRIMARY_ID>SRX12949444</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129483</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891520"> <IDENTIFIERS> <PRIMARY_ID>SRS10891520</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OK-CDC-QDX30129483/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949445" alias="QDX30129484"> <IDENTIFIERS> <PRIMARY_ID>SRX12949445</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129484</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891517"> <IDENTIFIERS> <PRIMARY_ID>SRS10891517</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129484/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949446" alias="QDX30129486"> <IDENTIFIERS> <PRIMARY_ID>SRX12949446</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129486</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891519"> <IDENTIFIERS> <PRIMARY_ID>SRS10891519</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129486/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949447" alias="QDX30129489"> <IDENTIFIERS> <PRIMARY_ID>SRX12949447</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129489</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891521"> <IDENTIFIERS> <PRIMARY_ID>SRS10891521</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129489/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949448" alias="QDX30129491"> <IDENTIFIERS> <PRIMARY_ID>SRX12949448</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129491</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891522"> <IDENTIFIERS> <PRIMARY_ID>SRS10891522</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129491/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949449" alias="QDX30129493"> <IDENTIFIERS> <PRIMARY_ID>SRX12949449</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129493</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891523"> <IDENTIFIERS> <PRIMARY_ID>SRS10891523</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129493/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949450" alias="QDX30129494"> <IDENTIFIERS> <PRIMARY_ID>SRX12949450</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129494</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891525"> <IDENTIFIERS> <PRIMARY_ID>SRS10891525</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OK-CDC-QDX30129494/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949452" alias="QDX30129633"> <IDENTIFIERS> <PRIMARY_ID>SRX12949452</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129633</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891526"> <IDENTIFIERS> <PRIMARY_ID>SRS10891526</PRIMARY_ID> <EXTERNAL_ID 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<SAMPLE_DESCRIPTOR accession="SRS10891527"> <IDENTIFIERS> <PRIMARY_ID>SRS10891527</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX30129636/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949454" alias="QDX30129637"> <IDENTIFIERS> <PRIMARY_ID>SRX12949454</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129637</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891528"> <IDENTIFIERS> <PRIMARY_ID>SRS10891528</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX30129637/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949455" alias="QDX30129639"> <IDENTIFIERS> <PRIMARY_ID>SRX12949455</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129639</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891529"> <IDENTIFIERS> <PRIMARY_ID>SRS10891529</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX30129639/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949456" alias="QDX30129642"> <IDENTIFIERS> <PRIMARY_ID>SRX12949456</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129642</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891531"> <IDENTIFIERS> <PRIMARY_ID>SRS10891531</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX30129642/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949457" alias="QDX30129643"> <IDENTIFIERS> <PRIMARY_ID>SRX12949457</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129643</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891530"> <IDENTIFIERS> <PRIMARY_ID>SRS10891530</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX30129643/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949459" alias="QDX30129468"> <IDENTIFIERS> <PRIMARY_ID>SRX12949459</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX30129468</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891533"> <IDENTIFIERS> <PRIMARY_ID>SRS10891533</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX30129468/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891537"> <IDENTIFIERS> <PRIMARY_ID>SRS10891537</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KS-CDC-QDX30129695/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949465" alias="QDX30129700"> <IDENTIFIERS> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS10891547"> <IDENTIFIERS> <PRIMARY_ID>SRS10891547</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX30129723/2021</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v3 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX12949474" alias="QDX30129725"> <IDENTIFIERS> 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